Wall clock time and date at job start Tue Mar 31 2020 05:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53212 * 1 3 3 H 1.08719 * 109.13824 * 2 1 4 4 C 1.52952 * 109.26944 * 120.28017 * 2 1 3 5 5 C 1.52153 * 109.98549 * 181.19654 * 4 2 1 6 6 C 1.51477 * 113.16924 * 306.73620 * 5 4 2 7 7 C 1.51919 * 115.44026 * 44.28886 * 6 5 4 8 8 C 1.53119 * 110.71700 * 80.37592 * 7 6 5 9 9 C 1.54389 * 108.05036 * 197.81427 * 7 6 5 10 10 C 1.52445 * 112.53964 * 316.69238 * 7 6 5 11 11 N 1.48134 * 108.71822 * 185.93681 * 5 4 2 12 12 C 1.34482 * 106.11720 * 229.02108 * 11 5 4 13 13 O 1.21528 * 123.94644 * 189.83210 * 12 11 5 14 14 N 1.33820 * 112.17170 * 10.12335 * 12 11 5 15 15 C 1.46408 * 124.33148 * 177.26248 * 14 12 11 16 16 C 1.52998 * 109.47268 * 90.02792 * 15 14 12 17 17 H 1.09001 * 109.46853 * 305.00416 * 16 15 14 18 18 C 1.47199 * 109.47187 * 64.99881 * 16 15 14 19 19 N 5.68647 * 156.51893 * 0.62846 * 2 1 3 20 20 C 1.53001 * 109.47477 * 185.00148 * 16 15 14 21 21 C 1.50697 * 109.46995 * 174.99956 * 20 16 15 22 22 H 1.07991 * 120.00449 * 359.72153 * 21 20 16 23 23 C 1.37885 * 119.99686 * 179.97438 * 21 20 16 24 24 N 1.31516 * 119.99913 * 359.72095 * 23 21 20 25 25 Si 1.86798 * 119.99766 * 179.72528 * 23 21 20 26 26 H 1.48493 * 109.47326 * 90.00142 * 25 23 21 27 27 H 1.48506 * 109.46545 * 209.99892 * 25 23 21 28 28 H 1.48498 * 109.47210 * 329.99603 * 25 23 21 29 29 C 1.35083 * 111.38084 * 358.20503 * 14 12 11 30 30 O 1.21214 * 126.26638 * 171.67683 * 29 14 12 31 31 H 1.08999 * 109.47178 * 180.90323 * 1 2 3 32 32 H 1.09006 * 109.47543 * 300.90575 * 1 2 3 33 33 H 1.08998 * 109.47108 * 60.90299 * 1 2 3 34 34 H 1.09110 * 109.39457 * 60.86255 * 4 2 1 35 35 H 1.09137 * 109.33563 * 301.44399 * 4 2 1 36 36 H 1.10139 * 108.54855 * 166.54220 * 6 5 4 37 37 H 1.10055 * 108.64775 * 281.81558 * 6 5 4 38 38 H 1.08997 * 109.47146 * 60.00201 * 8 7 6 39 39 H 1.09001 * 109.46826 * 180.02562 * 8 7 6 40 40 H 1.08999 * 109.46829 * 299.99929 * 8 7 6 41 41 H 1.09004 * 109.47208 * 60.00032 * 9 7 6 42 42 H 1.08997 * 109.46767 * 179.97438 * 9 7 6 43 43 H 1.08998 * 109.47547 * 299.99898 * 9 7 6 44 44 H 1.09304 * 109.42372 * 172.71143 * 10 7 6 45 45 H 1.09333 * 109.39578 * 291.48089 * 10 7 6 46 46 H 0.96677 * 126.05980 * 49.91363 * 11 5 4 47 47 H 1.08994 * 109.47199 * 330.02626 * 15 14 12 48 48 H 1.09002 * 109.47444 * 210.02591 * 15 14 12 49 49 H 1.08998 * 109.47065 * 54.99382 * 20 16 15 50 50 H 1.09001 * 109.46892 * 294.99646 * 20 16 15 51 51 H 0.97000 * 119.99651 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5321 0.0000 0.0000 3 1 1.8886 1.0271 0.0000 4 6 2.0369 -0.7280 1.2468 5 6 3.5580 -0.7119 1.2784 6 6 4.1862 -1.2401 0.0053 7 6 3.5614 -0.7411 -1.2865 8 6 4.0772 0.6585 -1.6323 9 6 3.9951 -1.6893 -2.4251 10 6 2.0378 -0.7402 -1.2365 11 7 4.0188 -1.5438 2.4142 12 6 4.9195 -0.8000 3.0805 13 8 5.6293 -1.2285 3.9690 14 7 4.9397 0.4689 2.6560 15 6 5.7780 1.5202 3.2353 16 6 7.1230 1.5593 2.5072 17 1 7.5817 0.5710 2.5383 18 6 6.9112 1.9580 1.1062 19 7 6.7477 2.2656 0.0249 20 6 8.0444 2.5710 3.1917 21 6 9.4081 2.5212 2.5524 22 1 9.6000 1.8333 1.7423 23 6 10.4125 3.3502 3.0053 24 7 10.1787 4.1883 3.9915 25 14 12.1051 3.2831 2.2179 26 1 12.1631 4.2427 1.0862 27 1 13.1344 3.6436 3.2259 28 1 12.3634 1.9096 1.7161 29 6 4.0729 0.6615 1.6380 30 8 3.7697 1.7271 1.1462 31 1 -0.3633 -1.0275 0.0162 32 1 -0.3634 0.5279 0.8818 33 1 -0.3633 0.4997 -0.8980 34 1 1.6834 -1.7602 1.2318 35 1 1.6490 -0.2307 2.1375 36 1 5.2551 -0.9747 0.0057 37 1 4.1397 -2.3396 0.0199 38 1 5.1599 0.6268 -1.7541 39 1 3.6165 0.9963 -2.5606 40 1 3.8220 1.3486 -0.8282 41 1 3.6509 -2.7003 -2.2070 42 1 3.5582 -1.3520 -3.3650 43 1 5.0820 -1.6854 -2.5071 44 1 1.6450 -0.2543 -2.1334 45 1 1.6747 -1.7711 -1.2126 46 1 3.7301 -2.4446 2.6137 47 1 5.9429 1.3121 4.2924 48 1 5.2788 2.4833 3.1282 49 1 8.1301 2.3262 4.2503 50 1 7.6285 3.5727 3.0829 51 1 10.8852 4.7718 4.3098 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229510182.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:11 Heat of formation + Delta-G solvation = -44.648910 kcal Electronic energy + Delta-G solvation = -32907.349835 eV Core-core repulsion = 28806.566932 eV Total energy + Delta-G solvation = -4100.782902 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.83567 -39.53321 -38.34353 -36.84346 -36.14786 -34.82496 -34.43956 -33.48886 -31.69711 -30.35141 -27.58734 -27.24944 -27.02323 -26.74474 -24.82459 -23.84727 -21.92660 -21.86287 -21.17690 -20.44319 -18.60335 -17.96880 -17.11216 -16.77509 -16.42826 -15.97442 -15.66610 -15.45652 -15.35794 -14.97447 -14.60200 -14.48589 -14.42309 -14.12717 -13.69107 -13.39420 -13.22568 -13.15661 -12.76029 -12.56315 -12.51679 -12.32068 -12.13841 -12.03765 -11.99900 -11.81087 -11.72890 -11.49657 -11.44596 -11.10862 -11.08409 -10.99843 -10.89546 -10.64927 -10.58055 -10.47209 -10.39872 -10.34484 -10.00893 -9.84908 -9.57043 -9.44524 -9.17058 -8.46135 -6.10359 -4.13592 1.63266 2.21530 2.97293 3.00599 3.30091 3.36503 3.39961 3.58019 3.62670 3.78915 4.16565 4.22270 4.40431 4.49245 4.60952 4.65149 4.67993 4.87463 4.99067 5.01357 5.15707 5.26558 5.27868 5.31464 5.33653 5.38275 5.40503 5.45902 5.50383 5.51103 5.54780 5.63523 5.68124 5.71840 5.83500 5.86735 5.91048 5.91367 5.94859 6.12479 6.17343 6.21501 6.26078 6.41324 6.53245 6.72031 7.05409 7.38759 7.42525 7.47332 7.83772 8.13022 8.20467 8.39146 8.89700 9.51687 11.00549 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015392 B = 0.003266 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.673442 B = 8570.140114 C = 9235.377061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.093 0.907 4 C -0.103 4.103 5 C 0.135 3.865 6 C -0.103 4.103 7 C -0.054 4.054 8 C -0.158 4.158 9 C -0.144 4.144 10 C -0.100 4.100 11 N -0.733 5.733 12 C 0.703 3.297 13 O -0.534 6.534 14 N -0.580 5.580 15 C 0.124 3.876 16 C -0.008 4.008 17 H 0.107 0.893 18 C 0.229 3.771 19 N -0.451 5.451 20 C 0.035 3.965 21 C -0.526 4.526 22 H 0.056 0.944 23 C 0.064 3.936 24 N -0.890 5.890 25 Si 0.892 3.108 26 H -0.280 1.280 27 H -0.285 1.285 28 H -0.273 1.273 29 C 0.528 3.472 30 O -0.446 6.446 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.056 0.944 39 H 0.052 0.948 40 H 0.081 0.919 41 H 0.053 0.947 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.436 0.564 47 H 0.115 0.885 48 H 0.101 0.899 49 H 0.043 0.957 50 H 0.030 0.970 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.796 -13.682 -6.371 25.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.111 0.889 4 C -0.141 4.141 5 C 0.045 3.955 6 C -0.142 4.142 7 C -0.055 4.055 8 C -0.215 4.215 9 C -0.201 4.201 10 C -0.137 4.137 11 N -0.398 5.398 12 C 0.404 3.596 13 O -0.407 6.407 14 N -0.326 5.326 15 C 0.002 3.998 16 C -0.030 4.030 17 H 0.124 0.876 18 C -0.088 4.088 19 N -0.128 5.128 20 C -0.003 4.003 21 C -0.564 4.564 22 H 0.074 0.926 23 C -0.139 4.139 24 N -0.528 5.528 25 Si 0.720 3.280 26 H -0.206 1.206 27 H -0.210 1.210 28 H -0.198 1.198 29 C 0.315 3.685 30 O -0.313 6.313 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.099 0.901 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.280 0.720 47 H 0.133 0.867 48 H 0.119 0.881 49 H 0.061 0.939 50 H 0.048 0.952 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.650 -12.642 -7.620 25.383 hybrid contribution 1.192 -0.539 0.123 1.314 sum -19.458 -13.180 -7.497 24.668 Atomic orbital electron populations 1.21839 0.94655 1.01649 1.02005 1.21158 0.95760 1.01246 0.93534 0.88886 1.21591 0.90144 1.02529 0.99833 1.20980 0.97314 0.88458 0.88748 1.21464 1.00304 1.01469 0.90924 1.20354 0.95072 0.96732 0.93350 1.22203 1.01198 0.95560 1.02561 1.22258 1.01524 0.98452 0.97884 1.21552 0.93865 1.00395 0.97919 1.45934 1.45706 1.18697 1.29427 1.15879 0.80783 0.81008 0.81907 1.91033 1.43744 1.74022 1.31863 1.46711 1.39966 1.11205 1.34746 1.21975 0.89311 0.89252 0.99213 1.19619 0.95881 1.04024 0.83505 0.87553 1.29031 0.92183 0.92801 0.94833 1.81007 1.09586 1.09432 1.12746 1.19155 0.92542 0.92430 0.96216 1.21066 0.95297 1.21684 1.18367 0.92552 1.24937 0.98965 0.95098 0.94866 1.69933 1.33529 1.22919 1.26449 0.86577 0.83792 0.78544 0.79087 1.20644 1.21031 1.19752 1.20693 0.78303 0.90735 0.78818 1.90729 1.57857 1.28483 1.54266 0.92783 0.92593 0.92369 0.89974 0.90766 0.91119 0.89964 0.92496 0.92894 0.90082 0.92817 0.92334 0.92546 0.91438 0.91948 0.72022 0.86708 0.88063 0.93882 0.95213 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.19 37.27 0.34 -0.61 16 2 C -0.10 -0.81 2.55 -90.68 -0.23 -1.04 16 3 H 0.09 1.01 5.62 -52.09 -0.29 0.72 16 4 C -0.10 -0.81 4.22 -27.19 -0.11 -0.92 16 5 C 0.14 1.37 0.88 -133.12 -0.12 1.25 16 6 C -0.10 -1.03 3.74 -28.05 -0.10 -1.13 16 7 C -0.05 -0.52 0.71 -154.55 -0.11 -0.63 16 8 C -0.16 -1.98 8.00 37.22 0.30 -1.68 16 9 C -0.14 -1.20 8.11 37.89 0.31 -0.89 16 10 C -0.10 -0.77 3.78 -27.16 -0.10 -0.88 16 11 N -0.73 -7.19 5.75 -53.83 -0.31 -7.50 16 12 C 0.70 9.80 8.59 -88.03 -0.76 9.04 16 13 O -0.53 -9.11 17.52 5.34 0.09 -9.01 16 14 N -0.58 -8.37 2.49 -120.95 -0.30 -8.67 16 15 C 0.12 1.94 5.14 -4.09 -0.02 1.92 16 16 C -0.01 -0.15 2.42 -93.41 -0.23 -0.37 16 17 H 0.11 2.02 8.14 -51.93 -0.42 1.60 16 18 C 0.23 4.74 12.75 -20.76 -0.26 4.47 16 19 N -0.45 -9.81 18.54 42.16 0.78 -9.03 16 20 C 0.04 0.82 4.42 -27.88 -0.12 0.70 16 21 C -0.53 -14.11 8.60 -34.44 -0.30 -14.41 16 22 H 0.06 1.51 7.60 -52.49 -0.40 1.11 16 23 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 24 N -0.89 -25.50 13.29 55.43 0.74 -24.77 16 25 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 29 C 0.53 7.25 5.67 -10.69 -0.06 7.19 16 30 O -0.45 -7.04 13.28 5.61 0.07 -6.96 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.47 8.15 -51.87 -0.42 0.05 16 35 H 0.07 0.60 8.10 -51.85 -0.42 0.18 16 36 H 0.07 0.88 7.96 -51.28 -0.41 0.48 16 37 H 0.08 0.65 7.89 -51.33 -0.40 0.25 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.05 0.60 8.12 -51.93 -0.42 0.18 16 40 H 0.08 1.18 4.09 -51.93 -0.21 0.97 16 41 H 0.05 0.37 8.06 -51.93 -0.42 -0.05 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.51 8.11 -51.76 -0.42 0.09 16 45 H 0.06 0.40 8.11 -51.74 -0.42 -0.02 16 46 H 0.44 3.01 8.94 -40.94 -0.37 2.64 16 47 H 0.11 1.67 7.90 -51.93 -0.41 1.26 16 48 H 0.10 1.54 7.91 -51.93 -0.41 1.13 16 49 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 50 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 404.06 15.07 6.09 6.09 Total: -1.00 -31.98 404.06 -7.90 -39.87 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -8.37 Total: -0.15 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -1.68 Total: 3.67 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: 0.91 Total: -49.96 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: 0.17 Total: -15.98 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.98 -7.90 -39.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229510182.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.774 kcal (2) G-P(sol) polarization free energy of solvation -31.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds