Wall clock time and date at job start Tue Mar 31 2020 05:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46998 * 350.41081 * 3 2 1 5 5 C 1.37095 * 119.99882 * 263.83840 * 4 3 2 6 6 H 1.07998 * 119.99710 * 192.04430 * 5 4 3 7 7 C 1.38947 * 120.00124 * 12.04335 * 5 4 3 8 8 N 1.31415 * 120.00018 * 20.82282 * 7 5 4 9 9 Si 1.86801 * 120.00226 * 200.82046 * 7 5 4 10 10 H 1.48499 * 109.46599 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.47145 * 120.00281 * 9 7 5 12 12 H 1.48494 * 109.47152 * 240.00654 * 9 7 5 13 13 C 1.34773 * 119.99679 * 83.84780 * 4 3 2 14 14 O 1.21296 * 120.00303 * 354.14622 * 13 4 3 15 15 C 1.50704 * 119.99922 * 174.15877 * 13 4 3 16 16 H 1.09009 * 109.52126 * 305.35523 * 15 13 4 17 17 C 1.53038 * 109.50018 * 185.28102 * 15 13 4 18 18 C 1.53040 * 109.54042 * 178.67989 * 17 15 13 19 19 C 1.53198 * 109.33666 * 61.34639 * 18 17 15 20 20 N 1.46938 * 108.77131 * 305.41465 * 19 18 17 21 21 C 1.34780 * 120.60165 * 233.53922 * 20 19 18 22 22 O 1.21582 * 119.99734 * 185.79621 * 21 20 19 23 23 N 1.34775 * 120.00255 * 5.79395 * 21 20 19 24 24 C 1.46496 * 119.99852 * 185.41776 * 23 21 20 25 25 C 1.54265 * 110.02947 * 272.16103 * 24 23 21 26 26 C 1.54891 * 104.20004 * 217.10674 * 25 24 23 27 27 C 1.54892 * 102.74560 * 37.94197 * 26 25 24 28 28 C 1.53876 * 110.03282 * 155.00019 * 24 23 21 29 29 C 1.46918 * 118.76560 * 53.55438 * 20 19 18 30 30 H 4.40640 * 5.51372 * 180.02562 * 4 1 2 31 31 H 1.09000 * 109.46618 * 230.40914 * 3 2 1 32 32 H 1.09002 * 109.46796 * 110.41362 * 3 2 1 33 33 H 0.96994 * 120.00391 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.46357 * 58.65341 * 17 15 13 35 35 H 1.09004 * 109.44620 * 298.69570 * 17 15 13 36 36 H 1.08995 * 109.49994 * 181.30962 * 18 17 15 37 37 H 1.09000 * 109.49324 * 301.37866 * 18 17 15 38 38 H 1.08990 * 109.58930 * 65.17023 * 19 18 17 39 39 H 1.09002 * 109.58227 * 185.59501 * 19 18 17 40 40 H 0.97004 * 119.99859 * 5.40894 * 23 21 20 41 41 H 1.08999 * 110.02373 * 33.60670 * 24 23 21 42 42 H 1.09006 * 110.48970 * 335.78843 * 25 24 23 43 43 H 1.09004 * 110.48747 * 98.42709 * 25 24 23 44 44 H 1.08995 * 110.75715 * 279.63130 * 26 25 24 45 45 H 1.08999 * 110.75603 * 156.25533 * 26 25 24 46 46 H 1.08997 * 110.48716 * 203.37793 * 27 26 25 47 47 H 1.08999 * 110.59730 * 80.79587 * 27 26 25 48 48 H 1.08996 * 110.02988 * 238.56497 * 28 24 23 49 49 H 1.08998 * 110.03121 * 359.94514 * 28 24 23 50 50 H 1.09003 * 109.59021 * 186.62173 * 29 20 19 51 51 H 1.09003 * 109.58291 * 66.20211 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1350 -1.3610 0.2301 5 6 3.4838 -1.7596 1.4946 6 1 4.0222 -2.6844 1.6400 7 6 3.1446 -0.9737 2.5891 8 7 2.1711 -0.0964 2.4916 9 14 4.0724 -1.1642 4.1992 10 1 5.1147 -2.2111 4.0489 11 1 4.7151 0.1261 4.5558 12 1 3.1251 -1.5587 5.2726 13 6 3.2420 -2.2218 -0.8014 14 8 2.8350 -1.9061 -1.8996 15 6 3.8672 -3.5768 -0.5904 16 1 4.8584 -3.4565 -0.1531 17 6 3.9860 -4.2994 -1.9341 18 6 4.6507 -5.6620 -1.7255 19 6 3.7818 -6.5130 -0.7940 20 7 3.5416 -5.7618 0.4458 21 6 3.8230 -6.3089 1.6450 22 8 3.5231 -5.7217 2.6665 23 7 4.4367 -7.5070 1.7119 24 6 4.6360 -8.1564 3.0098 25 6 5.9637 -7.6851 3.6381 26 6 6.5235 -8.9493 4.3364 27 6 6.1487 -10.0805 3.3469 28 6 4.7537 -9.6795 2.8246 29 6 2.9889 -4.4037 0.3538 30 1 -1.0498 -0.0004 -0.0001 31 1 3.0090 0.6558 0.7920 32 1 3.0092 0.3593 -0.9632 33 1 1.9345 0.4525 3.2555 34 1 4.5902 -3.7012 -2.6161 35 1 2.9922 -4.4414 -2.3590 36 1 4.7561 -6.1663 -2.6860 37 1 5.6348 -5.5220 -1.2781 38 1 2.8304 -6.7304 -1.2791 39 1 4.2980 -7.4449 -0.5630 40 1 4.7464 -7.9392 0.9006 41 1 3.8042 -7.9244 3.6749 42 1 6.6506 -7.3406 2.8650 43 1 5.7817 -6.8956 4.3673 44 1 6.0400 -9.1040 5.3009 45 1 7.6052 -8.8798 4.4519 46 1 6.1017 -11.0391 3.8634 47 1 6.8649 -10.1252 2.5264 48 1 3.9795 -10.1865 3.4004 49 1 4.6616 -9.9354 1.7691 50 1 2.9815 -3.9443 1.3423 51 1 1.9727 -4.4486 -0.0380 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000239667428.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:50 Heat of formation + Delta-G solvation = 4.517104 kcal Electronic energy + Delta-G solvation = -32163.331242 eV Core-core repulsion = 28064.680338 eV Total energy + Delta-G solvation = -4098.650904 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.40132 -39.08953 -37.99044 -36.60938 -35.08439 -33.73966 -32.25706 -31.92246 -31.56345 -30.52713 -28.89599 -27.64032 -26.55438 -24.97332 -24.65750 -23.08068 -21.31140 -20.85744 -20.37334 -19.60726 -18.93441 -18.09084 -17.50853 -16.54676 -16.44572 -16.10659 -15.55848 -15.26253 -14.92794 -14.46473 -14.33364 -14.31445 -14.10788 -13.89040 -13.54856 -13.51828 -13.05535 -12.98940 -12.70838 -12.42361 -12.09830 -11.92045 -11.80219 -11.64622 -11.52318 -11.37814 -11.21958 -11.04225 -10.96733 -10.92615 -10.82340 -10.73703 -10.62804 -10.34375 -10.28964 -9.96340 -9.75486 -9.32237 -9.28644 -8.96492 -8.67847 -8.47009 -8.16506 -7.88586 -6.36173 -3.88668 2.83194 3.16556 3.29808 3.36244 3.46686 3.74962 3.95102 4.01213 4.21518 4.30642 4.38748 4.47312 4.68144 4.79166 4.97701 5.04400 5.09401 5.19391 5.22480 5.30775 5.37522 5.38219 5.46932 5.53503 5.57246 5.60515 5.69525 5.70843 5.75219 5.83053 5.86453 5.98637 6.02923 6.06463 6.13406 6.17114 6.26594 6.32614 6.42743 6.65660 6.69481 6.70562 6.76721 6.87942 7.00948 7.22261 7.22404 7.45775 7.67523 8.17203 8.34035 8.88266 8.99991 9.06679 9.44689 9.84537 10.63179 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011411 B = 0.003714 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.206834 B = 7536.929233 C = 9288.980661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 C -0.097 4.097 3 C 0.236 3.764 4 N -0.434 5.434 5 C -0.345 4.345 6 H 0.111 0.889 7 C 0.042 3.958 8 N -0.853 5.853 9 Si 0.915 3.085 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.281 1.281 13 C 0.461 3.539 14 O -0.602 6.602 15 C -0.098 4.098 16 H 0.086 0.914 17 C -0.096 4.096 18 C -0.134 4.134 19 C 0.112 3.888 20 N -0.625 5.625 21 C 0.704 3.296 22 O -0.578 6.578 23 N -0.746 5.746 24 C 0.159 3.841 25 C -0.136 4.136 26 C -0.125 4.125 27 C -0.123 4.123 28 C -0.131 4.131 29 C 0.131 3.869 30 H 0.197 0.803 31 H 0.118 0.882 32 H 0.062 0.938 33 H 0.269 0.731 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.391 0.609 41 H 0.089 0.911 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.066 0.934 46 H 0.065 0.935 47 H 0.065 0.935 48 H 0.073 0.927 49 H 0.069 0.931 50 H 0.128 0.872 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.572 -17.174 -1.209 18.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 C -0.099 4.099 3 C 0.113 3.887 4 N -0.151 5.151 5 C -0.471 4.471 6 H 0.128 0.872 7 C -0.164 4.164 8 N -0.489 5.489 9 Si 0.742 3.258 10 H -0.190 1.190 11 H -0.207 1.207 12 H -0.207 1.207 13 C 0.249 3.751 14 O -0.488 6.488 15 C -0.121 4.121 16 H 0.104 0.896 17 C -0.134 4.134 18 C -0.173 4.173 19 C -0.012 4.012 20 N -0.363 5.363 21 C 0.405 3.595 22 O -0.454 6.454 23 N -0.404 5.404 24 C 0.054 3.946 25 C -0.175 4.175 26 C -0.163 4.163 27 C -0.161 4.161 28 C -0.169 4.169 29 C 0.008 3.992 30 H 0.214 0.786 31 H 0.136 0.864 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.228 0.772 41 H 0.108 0.892 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.092 0.908 49 H 0.087 0.913 50 H 0.146 0.854 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.035 -16.414 -0.825 17.877 hybrid contribution 0.240 -0.276 0.565 0.673 sum 7.276 -16.690 -0.260 18.209 Atomic orbital electron populations 1.24208 0.95359 1.02694 1.07366 1.23234 0.94394 0.97811 0.94442 1.18307 0.84153 0.85905 1.00295 1.43777 1.54807 1.09388 1.07141 1.19819 1.36327 1.09415 0.81558 0.87174 1.25196 0.95208 0.96489 0.99500 1.70137 1.23718 1.23378 1.31713 0.86026 0.80003 0.78070 0.81723 1.18974 1.20722 1.20701 1.19872 0.84308 0.85966 0.84950 1.90541 1.54469 1.78080 1.25732 1.21326 1.00583 0.93666 0.96478 0.89566 1.21280 1.01488 0.94152 0.96489 1.21960 0.99241 0.96941 0.99118 1.21609 0.99735 0.94009 0.85810 1.47396 1.67705 1.17281 1.03893 1.15893 0.78637 0.81055 0.83890 1.90962 1.59050 1.62240 1.33154 1.45505 1.64250 1.21379 1.09307 1.21439 0.98291 0.90617 0.84299 1.22822 0.96596 0.97797 1.00259 1.22485 1.00669 0.94659 0.98467 1.22344 0.96294 0.98487 0.98958 1.22444 0.97988 0.94780 1.01708 1.21803 0.94874 0.78766 1.03737 0.78555 0.86443 0.92033 0.91991 0.91405 0.91377 0.90944 0.91665 0.91428 0.91223 0.77219 0.89247 0.91225 0.90865 0.91330 0.91508 0.91609 0.91609 0.90819 0.91274 0.85383 0.92160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -6.48 19.25 29.55 0.57 -5.91 16 2 C -0.10 -2.46 11.86 -37.12 -0.44 -2.90 16 3 C 0.24 5.82 5.03 -6.83 -0.03 5.79 16 4 N -0.43 -10.87 2.61 -117.93 -0.31 -11.18 16 5 C -0.34 -8.72 7.96 -14.94 -0.12 -8.84 16 6 H 0.11 2.75 4.99 -52.49 -0.26 2.49 16 7 C 0.04 1.07 4.96 -17.47 -0.09 0.98 16 8 N -0.85 -22.34 9.32 55.50 0.52 -21.82 16 9 Si 0.92 20.57 29.60 -169.99 -5.03 15.54 16 10 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 C 0.46 10.97 6.94 -10.98 -0.08 10.89 16 14 O -0.60 -15.60 15.71 5.54 0.09 -15.51 16 15 C -0.10 -1.91 1.85 -91.65 -0.17 -2.08 16 16 H 0.09 1.69 7.71 -51.92 -0.40 1.29 16 17 C -0.10 -1.54 4.46 -26.69 -0.12 -1.66 16 18 C -0.13 -1.58 6.08 -26.61 -0.16 -1.74 16 19 C 0.11 1.30 6.43 -3.70 -0.02 1.28 16 20 N -0.63 -10.01 2.97 -178.50 -0.53 -10.54 16 21 C 0.70 11.95 8.28 -86.92 -0.72 11.23 16 22 O -0.58 -12.53 15.49 5.29 0.08 -12.45 16 23 N -0.75 -9.15 4.93 -57.58 -0.28 -9.44 16 24 C 0.16 1.80 3.21 -66.81 -0.21 1.59 16 25 C -0.14 -1.52 6.53 -25.07 -0.16 -1.68 16 26 C -0.12 -1.04 6.91 -24.74 -0.17 -1.21 16 27 C -0.12 -0.87 6.83 -25.07 -0.17 -1.04 16 28 C -0.13 -1.04 6.57 -25.61 -0.17 -1.21 16 29 C 0.13 2.56 5.24 -3.72 -0.02 2.54 16 30 H 0.20 3.76 7.80 -54.10 -0.42 3.34 16 31 H 0.12 2.94 5.97 -51.93 -0.31 2.63 16 32 H 0.06 1.45 7.71 -51.93 -0.40 1.05 16 33 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 34 H 0.07 1.11 8.12 -51.93 -0.42 0.69 16 35 H 0.07 1.16 8.08 -51.93 -0.42 0.74 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.60 5.59 -51.93 -0.29 0.31 16 40 H 0.39 3.69 5.83 -40.82 -0.24 3.45 16 41 H 0.09 1.21 7.65 -51.93 -0.40 0.81 16 42 H 0.07 0.80 8.05 -51.93 -0.42 0.39 16 43 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 48 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.07 0.48 7.62 -51.93 -0.40 0.08 16 50 H 0.13 2.97 4.13 -51.93 -0.21 2.76 16 51 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 399.29 15.07 6.02 6.02 Total: -1.00 -32.08 399.29 -9.69 -41.77 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -7.95 Total: 11.58 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: -2.29 Total: 6.02 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: -0.60 Total: -52.98 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: 0.17 Total: -27.96 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.54 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.08 -9.69 -41.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000239667428.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.291 kcal (2) G-P(sol) polarization free energy of solvation -32.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds