Wall clock time and date at job start Tue Mar 31 2020 06:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86800 * 120.00197 * 2 1 4 4 H 1.48498 * 109.47529 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47049 * 299.99894 * 3 2 1 6 6 H 1.48497 * 109.46877 * 59.99556 * 3 2 1 7 7 C 1.38655 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99944 * 180.02562 * 7 2 1 9 9 O 1.34829 * 120.00285 * 0.02562 * 7 2 1 10 10 C 1.35743 * 117.00323 * 185.06067 * 9 7 2 11 11 C 1.38884 * 120.06847 * 354.45893 * 10 9 7 12 12 C 1.38100 * 119.93123 * 180.02562 * 11 10 9 13 13 C 1.38309 * 120.06951 * 0.02562 * 12 11 10 14 14 C 1.50695 * 119.92835 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47436 * 90.00063 * 14 13 12 16 16 O 1.20825 * 119.99701 * 359.97438 * 15 14 13 17 17 O 1.34226 * 119.99946 * 179.97438 * 15 14 13 18 18 C 1.45203 * 116.99696 * 179.97438 * 17 15 14 19 19 C 1.50707 * 109.46921 * 180.02562 * 18 17 15 20 20 C 1.38530 * 120.78509 * 359.71977 * 19 18 17 21 21 C 1.38504 * 119.16572 * 179.73507 * 20 19 18 22 22 F 1.35103 * 119.62094 * 180.25290 * 21 20 19 23 23 N 1.32034 * 120.75663 * 0.55087 * 21 20 19 24 24 C 1.31908 * 121.71481 * 359.72091 * 23 21 20 25 25 C 1.38370 * 120.75874 * 0.02562 * 24 23 21 26 26 F 1.35099 * 120.41195 * 179.97438 * 25 24 23 27 27 C 1.38300 * 120.13476 * 0.25178 * 13 12 11 28 28 C 1.38103 * 120.07235 * 359.45128 * 27 13 12 29 29 H 0.97002 * 119.99992 * 0.02562 * 1 2 3 30 30 H 1.07996 * 120.03050 * 0.02562 * 11 10 9 31 31 H 1.08003 * 119.96708 * 180.02562 * 12 11 10 32 32 H 1.08999 * 109.46626 * 209.99947 * 14 13 12 33 33 H 1.09004 * 109.47318 * 329.99490 * 14 13 12 34 34 H 1.09001 * 109.47283 * 300.00005 * 18 17 15 35 35 H 1.09000 * 109.47502 * 60.00303 * 18 17 15 36 36 H 1.08001 * 120.41456 * 359.97438 * 20 19 18 37 37 H 1.08000 * 119.62199 * 179.97438 * 24 23 21 38 38 H 1.08004 * 119.96372 * 179.70276 * 27 13 12 39 39 H 1.07998 * 120.03412 * 180.26808 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3464 0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8908 2.3964 1.2124 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3685 0.0005 10 6 2.0699 -3.5045 0.1078 11 6 3.4572 -3.4394 0.0953 12 6 4.2023 -4.5971 0.2040 13 6 3.5685 -5.8204 0.3247 14 6 4.3847 -7.0817 0.4426 15 6 4.6632 -7.3659 1.8961 16 8 4.2424 -6.6205 2.7488 17 8 5.3786 -8.4472 2.2434 18 6 5.6083 -8.6579 3.6616 19 6 6.4238 -9.9100 3.8577 20 6 6.8305 -10.6686 2.7723 21 6 7.5836 -11.8103 2.9909 22 9 7.9895 -12.5541 1.9386 23 7 7.9044 -12.1832 4.2161 24 6 7.5297 -11.4884 5.2729 25 6 6.7800 -10.3341 5.1315 26 9 6.3996 -9.6281 6.2187 27 6 2.1872 -5.8891 0.3317 28 6 1.4365 -4.7345 0.2295 29 1 -0.4850 0.8401 -0.0004 30 1 3.9526 -2.4845 0.0006 31 1 5.2812 -4.5471 0.1948 32 1 3.8311 -7.9145 0.0091 33 1 5.3274 -6.9556 -0.0901 34 1 6.1482 -7.8050 4.0729 35 1 4.6515 -8.7633 4.1730 36 1 6.5670 -10.3713 1.7680 37 1 7.8107 -11.8248 6.2600 38 1 1.6952 -6.8463 0.4213 39 1 0.3579 -4.7884 0.2394 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000241383301.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:25 Heat of formation + Delta-G solvation = -132.449566 kcal Electronic energy + Delta-G solvation = -28143.568766 eV Core-core repulsion = 23460.787513 eV Total energy + Delta-G solvation = -4682.781253 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 349.096 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.61978 -49.54403 -40.94728 -40.34438 -39.04526 -37.19166 -36.34303 -34.06095 -32.57383 -31.59551 -31.14990 -30.23888 -28.45095 -26.77233 -25.25293 -24.43180 -23.05665 -22.06438 -21.73788 -20.30131 -18.70870 -18.37694 -18.20180 -18.05857 -17.47105 -17.18935 -17.02790 -16.60220 -16.31986 -16.04773 -15.26382 -14.96524 -14.87774 -14.68313 -14.43402 -14.20538 -14.04955 -13.78832 -13.64668 -13.49361 -13.32575 -13.29449 -12.79563 -12.67272 -12.54987 -12.01137 -11.62749 -11.34474 -11.33261 -10.97954 -10.86891 -10.67592 -10.50382 -10.46989 -10.44875 -10.31774 -9.46647 -9.38789 -8.88332 -8.23843 -7.26853 -6.49907 -4.08476 0.06527 0.20011 1.93055 2.16614 2.18969 2.50633 2.71244 2.86176 3.09639 3.11478 3.16900 3.29711 3.59730 3.92806 3.96570 4.00356 4.45507 4.60125 4.70639 4.72292 4.78630 4.89918 5.00631 5.06328 5.11978 5.17486 5.23632 5.34821 5.53267 5.63556 5.75779 5.86697 6.13643 6.17776 6.33706 6.62253 6.81351 6.83188 6.98646 7.15404 7.27331 7.38239 7.68472 7.75236 7.95112 8.95664 9.64614 10.67899 Molecular weight = 349.10amu Principal moments of inertia in cm(-1) A = 0.022221 B = 0.001730 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.764640 B =16177.148952 C =16660.351862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.039 3.961 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.392 4.392 8 H 0.094 0.906 9 O -0.175 6.175 10 C 0.160 3.840 11 C -0.233 4.233 12 C -0.052 4.052 13 C -0.188 4.188 14 C -0.047 4.047 15 C 0.457 3.543 16 O -0.483 6.483 17 O -0.362 6.362 18 C 0.106 3.894 19 C -0.049 4.049 20 C -0.144 4.144 21 C 0.302 3.698 22 F -0.103 7.103 23 N -0.488 5.488 24 C 0.118 3.882 25 C 0.045 3.955 26 F -0.118 7.118 27 C -0.056 4.056 28 C -0.192 4.192 29 H 0.270 0.730 30 H 0.128 0.872 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.170 0.830 37 H 0.184 0.816 38 H 0.110 0.890 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.530 -21.717 6.319 26.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.166 4.166 3 Si 0.767 3.233 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.468 4.468 8 H 0.111 0.889 9 O -0.078 6.078 10 C 0.106 3.894 11 C -0.253 4.253 12 C -0.070 4.070 13 C -0.189 4.189 14 C -0.085 4.085 15 C 0.299 3.701 16 O -0.367 6.367 17 O -0.280 6.280 18 C 0.033 3.967 19 C -0.058 4.058 20 C -0.165 4.165 21 C 0.149 3.851 22 F -0.082 7.082 23 N -0.202 5.202 24 C -0.040 4.040 25 C 0.023 3.977 26 F -0.096 7.096 27 C -0.074 4.074 28 C -0.211 4.211 29 H 0.080 0.920 30 H 0.146 0.854 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.188 0.812 37 H 0.201 0.799 38 H 0.128 0.872 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 14.450 -22.009 6.676 27.162 hybrid contribution 0.060 1.545 0.130 1.552 sum 14.510 -20.464 6.806 25.993 Atomic orbital electron populations 1.70048 1.05983 1.27677 1.45774 1.25317 0.95870 0.98914 0.96453 0.85629 0.79143 0.80259 0.78292 1.19065 1.20094 1.20094 1.21398 0.91877 0.80745 1.52784 0.88911 1.83975 1.34483 1.11535 1.77771 1.19411 0.90311 0.88053 0.91670 1.21116 0.93802 0.98821 1.11539 1.20534 0.98153 0.91682 0.96667 1.18604 0.93255 0.92486 1.14533 1.20115 1.02176 0.98450 0.87724 1.24364 0.74551 0.77413 0.93757 1.90743 1.47263 1.46571 1.52165 1.86449 1.68410 1.46714 1.26441 1.21521 0.99993 0.94169 0.81065 1.20041 0.97420 0.96743 0.91598 1.21677 0.98875 0.93795 1.02178 1.18117 0.94780 0.88942 0.83234 1.91673 1.88367 1.75793 1.52400 1.67067 1.22379 1.32721 0.98070 1.22613 0.93881 0.89588 0.97964 1.18421 1.01924 0.94373 0.82974 1.91583 1.89201 1.77181 1.51679 1.20423 0.92622 0.96865 0.97486 1.20167 0.99608 0.90218 1.11130 0.91985 0.85420 0.87612 0.87550 0.87592 0.88310 0.88291 0.81226 0.79927 0.87165 0.86369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.04 13.67 55.48 0.76 -24.28 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.35 29.55 -169.99 -5.02 15.33 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.39 -10.86 9.49 30.89 0.29 -10.57 16 8 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 9 O -0.17 -4.95 9.76 0.07 0.00 -4.95 16 10 C 0.16 3.83 6.65 -39.10 -0.26 3.57 16 11 C -0.23 -5.00 9.17 -39.39 -0.36 -5.36 16 12 C -0.05 -0.92 9.69 -39.61 -0.38 -1.31 16 13 C -0.19 -3.01 4.38 -104.58 -0.46 -3.47 16 14 C -0.05 -0.53 5.94 -29.04 -0.17 -0.70 16 15 C 0.46 5.69 7.95 36.00 0.29 5.97 16 16 O -0.48 -7.98 15.78 -18.75 -0.30 -8.27 16 17 O -0.36 -3.53 8.79 -39.25 -0.35 -3.88 16 18 C 0.11 0.93 5.53 36.01 0.20 1.13 16 19 C -0.05 -0.38 5.92 -104.27 -0.62 -0.99 16 20 C -0.14 -1.05 9.42 -39.38 -0.37 -1.42 16 21 C 0.30 2.52 8.41 -17.37 -0.15 2.38 16 22 F -0.10 -0.91 17.29 2.25 0.04 -0.87 16 23 N -0.49 -4.17 10.37 -13.55 -0.14 -4.31 16 24 C 0.12 0.76 11.17 -17.47 -0.20 0.56 16 25 C 0.05 0.32 7.29 -39.29 -0.29 0.03 16 26 F -0.12 -0.91 16.89 2.25 0.04 -0.87 16 27 C -0.06 -0.96 9.69 -39.61 -0.38 -1.34 16 28 C -0.19 -4.00 9.99 -39.39 -0.39 -4.39 16 29 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.13 2.74 5.64 -52.49 -0.30 2.44 16 31 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 32 H 0.11 0.92 8.08 -51.93 -0.42 0.50 16 33 H 0.11 0.93 8.08 -51.93 -0.42 0.51 16 34 H 0.10 0.87 8.13 -51.93 -0.42 0.44 16 35 H 0.10 0.86 8.13 -51.93 -0.42 0.44 16 36 H 0.17 1.05 7.10 -52.49 -0.37 0.68 16 37 H 0.18 0.61 8.06 -52.49 -0.42 0.19 16 38 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 39 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 360.52 15.07 5.43 5.43 Total: -1.00 -32.88 360.52 -6.33 -39.22 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -3.45 Total: 2.41 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -3.35 Total: -14.96 kcal Atomic # 7 Polarization: -29.21 SS G_CDS: 0.62 Total: -28.60 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.64 Total: -17.10 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.08 Total: -1.74 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.88 -6.33 -39.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000241383301.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.232 kcal (2) G-P(sol) polarization free energy of solvation -32.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds