Wall clock time and date at job start Tue Mar 31 2020 05:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99835 * 2 1 4 4 H 1.48491 * 109.47115 * 269.99586 * 3 2 1 5 5 H 1.48509 * 109.46780 * 29.99770 * 3 2 1 6 6 H 1.48497 * 109.46888 * 149.99527 * 3 2 1 7 7 C 1.37876 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00510 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99665 * 180.27868 * 11 10 9 13 13 O 1.21553 * 120.00289 * 359.72074 * 12 11 10 14 14 C 1.47797 * 119.99763 * 179.72376 * 12 11 10 15 15 C 1.39615 * 120.13562 * 359.72079 * 14 12 11 16 16 C 1.38028 * 119.90101 * 179.74340 * 15 14 12 17 17 Cl 1.73593 * 119.91676 * 180.29628 * 16 15 14 18 18 C 1.38491 * 120.17045 * 0.55883 * 16 15 14 19 19 C 1.38473 * 120.27426 * 359.69520 * 18 16 15 20 20 F 1.35095 * 119.94978 * 180.02562 * 19 18 16 21 21 C 1.38347 * 120.09532 * 0.02562 * 19 18 16 22 22 Br 1.89102 * 120.08444 * 179.97438 * 21 19 18 23 23 H 0.96999 * 120.00239 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47322 * 60.00361 * 9 7 2 25 25 H 1.09006 * 109.46960 * 299.99918 * 9 7 2 26 26 H 1.09009 * 109.46730 * 59.99906 * 10 9 7 27 27 H 1.08998 * 109.46846 * 300.00451 * 10 9 7 28 28 H 0.97001 * 119.99790 * 359.97438 * 11 10 9 29 29 H 1.08003 * 120.05225 * 0.02562 * 15 14 12 30 30 H 1.08000 * 119.86652 * 179.71807 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5130 -4.9308 -0.0001 12 6 2.1870 -6.0979 0.0055 13 8 3.4025 -6.0979 0.0059 14 6 1.4481 -7.3779 0.0110 15 6 0.0520 -7.3812 0.0164 16 6 -0.6332 -8.5794 0.0162 17 17 -2.3692 -8.5841 0.0151 18 6 0.0606 -9.7780 0.0224 19 6 1.4453 -9.7831 0.0224 20 9 2.1155 -10.9560 0.0279 21 6 2.1434 -8.5886 0.0168 22 35 4.0344 -8.5959 0.0176 23 1 -0.4850 0.8400 -0.0004 24 1 0.6249 -2.5571 -0.8897 25 1 0.6242 -2.5567 0.8904 26 1 2.8722 -3.6042 0.8906 27 1 2.8722 -3.6042 -0.8894 28 1 0.5430 -4.9308 0.0000 29 1 -0.4912 -6.4477 0.0161 30 1 -0.4806 -10.7127 0.0268 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252499593.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:15 Heat of formation + Delta-G solvation = -52.954327 kcal Electronic energy + Delta-G solvation = -19244.976020 eV Core-core repulsion = 15641.284684 eV Total energy + Delta-G solvation = -3603.691336 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 348.962 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.44077 -40.35546 -38.52128 -36.90356 -35.10076 -33.04738 -32.52914 -31.64776 -29.57534 -29.33344 -25.44407 -24.04921 -22.94989 -21.18789 -20.63068 -18.61280 -17.31365 -16.65662 -16.48302 -16.27646 -16.22169 -15.38107 -15.10906 -14.82084 -14.51836 -13.89653 -13.79446 -13.53116 -13.13131 -12.78972 -12.33442 -12.15819 -12.10987 -11.59399 -11.28382 -11.07599 -10.94710 -10.82564 -10.64929 -10.40522 -9.69056 -9.54350 -9.38455 -9.02198 -8.92394 -8.63599 -8.42651 -6.13503 -4.16591 0.06984 0.32916 1.25591 1.52208 2.39787 3.17760 3.27312 3.33911 3.36687 3.38242 3.65714 4.12467 4.26678 4.38328 4.51598 4.75420 4.96093 5.18156 5.23951 5.30134 5.44733 5.91196 6.22771 6.26091 6.63139 6.72405 7.43948 7.54266 7.76937 7.84423 8.20254 8.38677 8.89099 9.48715 10.98028 Molecular weight = 348.96amu Principal moments of inertia in cm(-1) A = 0.013098 B = 0.003256 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.182212 B = 8597.490164 C =10714.210098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.523 4.523 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.122 3.878 11 N -0.709 5.709 12 C 0.538 3.462 13 O -0.506 6.506 14 C -0.061 4.061 15 C -0.084 4.084 16 C -0.004 4.004 17 Cl -0.040 7.040 18 C -0.124 4.124 19 C 0.133 3.867 20 F -0.115 7.115 21 C -0.088 4.088 22 Br 0.021 6.979 23 H 0.262 0.738 24 H 0.023 0.977 25 H 0.023 0.977 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.396 0.604 29 H 0.156 0.844 30 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.512 -22.903 0.056 22.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.078 0.922 9 C -0.026 4.026 10 C 0.001 3.999 11 N -0.360 5.360 12 C 0.321 3.679 13 O -0.383 6.383 14 C -0.067 4.067 15 C -0.104 4.104 16 C -0.031 4.031 17 Cl -0.010 7.010 18 C -0.145 4.145 19 C 0.111 3.889 20 F -0.093 7.093 21 C -0.170 4.170 22 Br 0.108 6.892 23 H 0.072 0.928 24 H 0.041 0.959 25 H 0.042 0.958 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.231 0.769 29 H 0.173 0.827 30 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.166 -22.782 0.060 22.783 hybrid contribution -0.706 0.694 -0.009 0.990 sum -0.871 -22.089 0.051 22.106 Atomic orbital electron populations 1.69945 1.06093 1.26951 1.50241 1.24985 0.94884 0.99416 0.94900 0.86515 0.79862 0.82979 0.78231 1.20539 1.21154 1.19695 1.21025 0.93268 0.90280 1.51550 0.92179 1.19343 0.94208 0.91075 0.97949 1.21832 0.96113 0.80732 1.01272 1.46309 1.10554 1.06325 1.72812 1.17876 0.87607 0.83370 0.79016 1.90965 1.12213 1.86505 1.48607 1.19794 0.92768 0.93849 1.00267 1.21370 0.92509 0.98305 0.98250 1.20547 0.86293 0.93771 1.02498 1.98424 1.07204 1.98861 1.96547 1.21080 0.91667 0.99246 1.02470 1.16929 0.89276 0.80602 1.02058 1.91595 1.80017 1.44236 1.93426 1.22191 0.94896 0.93474 1.06483 1.96865 0.96940 1.98748 1.96601 0.92797 0.95854 0.95841 0.92041 0.92041 0.76913 0.82688 0.82394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.48 13.29 55.43 0.74 -24.74 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.52 -14.04 9.11 -34.44 -0.31 -14.36 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.01 0.28 5.09 -27.88 -0.14 0.13 16 10 C 0.12 2.43 5.61 -4.04 -0.02 2.41 16 11 N -0.71 -11.46 5.51 -61.26 -0.34 -11.80 16 12 C 0.54 8.62 7.76 -12.35 -0.10 8.52 16 13 O -0.51 -9.49 13.47 5.32 0.07 -9.42 16 14 C -0.06 -0.79 5.87 -104.96 -0.62 -1.40 16 15 C -0.08 -0.87 9.32 -39.14 -0.36 -1.23 16 16 C 0.00 -0.03 6.31 -39.57 -0.25 -0.28 16 17 Cl -0.04 -0.33 28.95 -51.86 -1.50 -1.83 16 18 C -0.12 -1.06 9.80 -39.40 -0.39 -1.45 16 19 C 0.13 1.42 7.26 -39.45 -0.29 1.13 16 20 F -0.11 -1.22 16.72 2.25 0.04 -1.18 16 21 C -0.09 -1.12 6.26 -39.03 -0.24 -1.37 16 22 Br 0.02 0.30 29.97 -68.01 -2.04 -1.74 16 23 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 24 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 27 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.40 5.42 6.50 -40.82 -0.27 5.15 16 29 H 0.16 1.37 6.40 -52.48 -0.34 1.04 16 30 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 306.20 15.07 4.61 4.61 Total: -1.00 -29.50 306.20 -8.51 -38.01 By element: Atomic # 1 Polarization: 0.75 SS G_CDS: -2.26 Total: -1.50 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -2.82 Total: -6.35 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.40 Total: -36.54 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.07 Total: -9.42 kcal Atomic # 9 Polarization: -1.22 SS G_CDS: 0.04 Total: -1.18 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.50 Total: -1.83 kcal Atomic # 35 Polarization: 0.30 SS G_CDS: -2.04 Total: -1.74 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.50 -8.51 -38.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252499593.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.945 kcal (2) G-P(sol) polarization free energy of solvation -29.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds