Wall clock time and date at job start Tue Mar 31 2020 05:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30218 * 1 3 3 Si 1.86796 * 120.00315 * 2 1 4 4 H 1.48496 * 109.47239 * 269.99969 * 3 2 1 5 5 H 1.48500 * 109.47260 * 30.00121 * 3 2 1 6 6 H 1.48503 * 109.47250 * 149.99804 * 3 2 1 7 7 C 1.40888 * 119.99767 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99977 * 180.02562 * 7 2 1 9 9 C 1.46167 * 120.00033 * 0.02562 * 7 2 1 10 10 O 1.21884 * 119.99950 * 0.02562 * 9 7 2 11 11 N 1.34777 * 120.00385 * 180.02562 * 9 7 2 12 12 N 1.28991 * 120.00283 * 179.97438 * 11 9 7 13 13 C 1.31911 * 120.00286 * 179.97438 * 12 11 9 14 14 C 1.41363 * 120.00278 * 180.02562 * 13 12 11 15 15 C 1.41046 * 120.12539 * 0.02562 * 14 13 12 16 16 C 1.36093 * 119.86878 * 179.97438 * 15 14 13 17 17 C 1.39990 * 120.12905 * 359.97438 * 16 15 14 18 18 N 1.38100 * 119.87461 * 179.97438 * 17 16 15 19 19 C 1.47018 * 110.99776 * 64.35038 * 18 17 16 20 20 C 1.53102 * 109.25668 * 177.60860 * 19 18 17 21 21 O 1.43011 * 109.25763 * 56.84543 * 20 19 18 22 22 C 1.43011 * 113.74404 * 301.33469 * 21 20 19 23 23 C 1.47008 * 110.99863 * 300.71815 * 18 17 16 24 24 C 1.39945 * 120.25476 * 0.25001 * 17 16 15 25 25 N 1.48019 * 119.93985 * 179.74838 * 24 17 16 26 26 O 1.31698 * 120.00389 * 185.11450 * 25 24 17 27 27 O 1.31705 * 119.99332 * 5.11296 * 25 24 17 28 28 C 1.36136 * 120.13154 * 359.48702 * 24 17 16 29 29 H 0.97007 * 119.99714 * 0.02562 * 1 2 3 30 30 H 0.97005 * 120.00032 * 0.02562 * 11 9 7 31 31 H 1.07999 * 119.99622 * 0.02562 * 13 12 11 32 32 H 1.08000 * 120.06936 * 359.97438 * 15 14 13 33 33 H 1.07998 * 119.94283 * 179.97438 * 16 15 14 34 34 H 1.09000 * 109.50479 * 57.67741 * 19 18 17 35 35 H 1.08995 * 109.54303 * 297.56104 * 19 18 17 36 36 H 1.08991 * 109.50744 * 176.78398 * 20 19 18 37 37 H 1.09007 * 109.50348 * 296.91552 * 20 19 18 38 38 H 1.09006 * 109.50625 * 298.73278 * 22 21 20 39 39 H 1.08998 * 109.54658 * 178.62895 * 22 21 20 40 40 H 1.09003 * 109.50918 * 302.32345 * 23 18 17 41 41 H 1.08997 * 109.50822 * 62.45726 * 23 18 17 42 42 H 1.07997 * 120.06987 * 180.23096 * 28 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3022 0.0000 0.0000 3 14 2.2362 1.6176 0.0000 4 1 2.4838 2.0463 -1.4000 5 1 1.4338 2.6526 0.7001 6 1 3.5338 1.4400 0.7001 7 6 2.0066 -1.2202 -0.0005 8 1 3.0866 -1.2202 -0.0001 9 6 1.2757 -2.4860 -0.0017 10 8 0.0568 -2.4859 -0.0026 11 7 1.9495 -3.6532 -0.0017 12 7 1.3044 -4.7703 -0.0022 13 6 1.9639 -5.9128 -0.0027 14 6 1.2570 -7.1370 -0.0038 15 6 -0.1535 -7.1400 -0.0049 16 6 -0.8287 -8.3216 -0.0065 17 6 -0.1261 -9.5324 -0.0075 18 7 -0.8166 -10.7283 -0.0086 19 6 -1.5946 -10.8864 -1.2460 20 6 -2.2948 -12.2478 -1.2318 21 8 -3.1120 -12.3458 -0.0623 22 6 -2.3865 -12.1970 1.1612 23 6 -1.6872 -10.8351 1.1712 24 6 1.2733 -9.5356 -0.0017 25 7 2.0091 -10.8199 0.0027 26 8 3.3217 -10.8265 0.1098 27 8 1.3510 -11.9561 -0.1004 28 6 1.9594 -8.3598 -0.0055 29 1 -0.4850 0.8401 -0.0004 30 1 2.9195 -3.6533 -0.0006 31 1 3.0439 -5.9128 -0.0023 32 1 -0.6966 -6.2065 -0.0045 33 1 -1.9087 -8.3253 -0.0069 34 1 -0.9267 -10.8296 -2.1056 35 1 -2.3404 -10.0943 -1.3115 36 1 -2.9181 -12.3458 -2.1206 37 1 -1.5475 -13.0414 -1.2212 38 1 -1.6419 -12.9890 1.2414 39 1 -3.0755 -12.2586 2.0035 40 1 -1.0870 -10.7408 2.0762 41 1 -2.4345 -10.0420 1.1451 42 1 3.0394 -8.3634 -0.0048 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252605358.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:44 Heat of formation + Delta-G solvation = 34.468953 kcal Electronic energy + Delta-G solvation = -29587.522941 eV Core-core repulsion = 25153.078747 eV Total energy + Delta-G solvation = -4434.444194 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.131 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.08968 -39.49709 -39.08407 -38.10470 -36.49593 -35.61402 -34.12621 -33.03303 -32.40017 -31.79017 -31.53249 -29.63225 -27.66292 -26.81173 -25.73406 -24.37072 -23.66862 -22.91729 -21.32902 -20.56308 -20.30311 -18.80932 -17.97910 -17.79813 -17.25268 -16.80447 -16.49436 -15.91380 -15.90824 -15.58212 -15.32228 -15.28270 -15.15381 -14.88403 -14.50364 -14.37790 -14.09213 -13.73800 -13.18899 -13.03685 -12.70332 -12.59353 -11.99823 -11.98297 -11.70863 -11.68335 -11.62289 -11.18369 -11.14765 -11.02961 -11.02203 -10.87109 -10.59694 -10.47695 -10.04527 -9.96096 -9.75175 -9.56867 -9.23810 -8.85796 -8.27065 -7.41698 -6.71390 -5.19376 -0.55598 0.43077 1.20836 1.25127 2.31514 2.89481 2.95486 2.99850 3.15100 3.46033 3.55273 3.57236 3.90917 4.16372 4.27504 4.51549 4.54478 4.64420 4.74591 4.78779 4.81842 4.87185 4.90041 5.03650 5.19024 5.22967 5.26595 5.31873 5.41045 5.46431 5.52486 5.62519 5.65161 5.77533 5.92413 6.12729 6.28699 6.31501 6.37636 6.79888 6.82692 6.94752 6.96568 7.20128 7.68529 8.36879 8.46543 8.80650 10.03307 10.20326 Molecular weight = 348.13amu Principal moments of inertia in cm(-1) A = 0.019096 B = 0.002064 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.942744 B =13565.317639 C =14711.637476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.746 5.746 2 C 0.085 3.915 3 Si 0.922 3.078 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.528 4.528 8 H 0.079 0.921 9 C 0.534 3.466 10 O -0.531 6.531 11 N -0.506 5.506 12 N -0.148 5.148 13 C -0.074 4.074 14 C 0.023 3.977 15 C -0.049 4.049 16 C -0.139 4.139 17 C 0.129 3.871 18 N -0.490 5.490 19 C 0.027 3.973 20 C 0.066 3.934 21 O -0.385 6.385 22 C 0.066 3.934 23 C 0.023 3.977 24 C 0.028 3.972 25 N -0.016 5.016 26 O -0.216 6.216 27 O -0.115 6.115 28 C -0.066 4.066 29 H 0.279 0.721 30 H 0.371 0.629 31 H 0.114 0.886 32 H 0.155 0.845 33 H 0.142 0.858 34 H 0.088 0.912 35 H 0.051 0.949 36 H 0.100 0.900 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.052 0.948 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.411 -17.578 -0.143 17.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C -0.139 4.139 3 Si 0.745 3.255 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.564 4.564 8 H 0.098 0.902 9 C 0.343 3.657 10 O -0.408 6.408 11 N -0.252 5.252 12 N 0.026 4.974 13 C -0.271 4.271 14 C 0.020 3.980 15 C -0.071 4.071 16 C -0.160 4.160 17 C 0.030 3.970 18 N -0.212 5.212 19 C -0.099 4.099 20 C -0.011 4.011 21 O -0.303 6.303 22 C -0.011 4.011 23 C -0.104 4.104 24 C -0.059 4.059 25 N 0.465 4.535 26 O -0.397 6.397 27 O -0.324 6.324 28 C -0.089 4.089 29 H 0.091 0.909 30 H 0.209 0.791 31 H 0.132 0.868 32 H 0.172 0.828 33 H 0.159 0.841 34 H 0.106 0.894 35 H 0.070 0.930 36 H 0.118 0.882 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.118 0.882 40 H 0.105 0.895 41 H 0.070 0.930 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.347 -16.580 -0.114 16.915 hybrid contribution 1.884 0.977 -0.010 2.122 sum -1.463 -15.603 -0.124 15.672 Atomic orbital electron populations 1.69761 1.07596 1.28856 1.31066 1.25890 0.94798 1.00861 0.92356 0.86122 0.80112 0.79954 0.79347 1.19211 1.19922 1.18445 1.20968 0.94041 0.87949 1.53469 0.90240 1.18765 0.87856 0.80328 0.78797 1.90724 1.13305 1.84915 1.51825 1.45739 1.08989 1.03635 1.66819 1.71571 1.31716 0.93620 1.00448 1.22334 0.96804 0.89652 1.18303 1.17518 0.92511 0.90874 0.97132 1.21725 0.93593 0.99306 0.92449 1.21481 1.01032 0.91466 1.02028 1.18550 0.89850 0.90073 0.98512 1.59334 1.28469 1.30003 1.03415 1.22871 0.96398 0.98942 0.91737 1.22670 0.94460 0.95531 0.88433 1.87984 1.35022 1.93219 1.14122 1.22655 0.95892 0.95338 0.87175 1.22916 0.95327 0.99073 0.93059 1.19848 0.89870 0.81768 1.14391 1.50309 1.02691 1.04129 0.96341 1.96268 0.89425 1.96135 1.57863 1.96268 1.68276 1.16609 1.51237 1.20878 1.01808 0.88941 0.97316 0.90930 0.79129 0.86817 0.82753 0.84057 0.89401 0.93043 0.88181 0.91356 0.91505 0.88184 0.89463 0.92956 0.82598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -20.09 11.82 55.60 0.66 -19.43 16 2 C 0.08 2.10 5.52 -17.23 -0.10 2.01 16 3 Si 0.92 17.75 29.57 -169.99 -5.03 12.73 16 4 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 5 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 6 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 7 C -0.53 -13.14 9.57 -35.40 -0.34 -13.48 16 8 H 0.08 1.75 7.86 -52.49 -0.41 1.33 16 9 C 0.53 13.79 7.82 -13.08 -0.10 13.69 16 10 O -0.53 -15.93 15.35 5.02 0.08 -15.85 16 11 N -0.51 -10.42 5.88 30.17 0.18 -10.24 16 12 N -0.15 -2.86 9.56 31.12 0.30 -2.56 16 13 C -0.07 -1.11 10.39 -16.33 -0.17 -1.28 16 14 C 0.02 0.31 5.76 -106.59 -0.61 -0.31 16 15 C -0.05 -0.64 9.50 -39.29 -0.37 -1.01 16 16 C -0.14 -1.55 8.52 -39.70 -0.34 -1.88 16 17 C 0.13 1.51 4.72 -83.74 -0.40 1.12 16 18 N -0.49 -5.22 2.45 -170.63 -0.42 -5.64 16 19 C 0.03 0.24 5.39 -3.71 -0.02 0.22 16 20 C 0.07 0.55 7.01 37.21 0.26 0.81 16 21 O -0.39 -3.77 10.83 -35.23 -0.38 -4.15 16 22 C 0.07 0.55 7.01 37.21 0.26 0.81 16 23 C 0.02 0.21 5.34 -3.71 -0.02 0.19 16 24 C 0.03 0.37 6.86 -80.06 -0.55 -0.17 16 25 N -0.02 -0.24 4.98 33.91 0.17 -0.07 16 26 O -0.22 -3.48 19.13 -31.57 -0.60 -4.08 16 27 O -0.11 -1.72 17.77 -31.57 -0.56 -2.28 16 28 C -0.07 -0.82 9.27 -39.28 -0.36 -1.19 16 29 H 0.28 6.73 8.28 -40.82 -0.34 6.39 16 30 H 0.37 6.23 8.43 -190.12 -1.60 4.63 16 31 H 0.11 1.40 7.95 -52.49 -0.42 0.98 16 32 H 0.15 2.24 7.47 -52.49 -0.39 1.85 16 33 H 0.14 1.31 6.99 -52.49 -0.37 0.95 16 34 H 0.09 0.81 8.13 -51.93 -0.42 0.38 16 35 H 0.05 0.45 7.40 -51.93 -0.38 0.07 16 36 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.05 0.46 7.13 -51.93 -0.37 0.09 16 42 H 0.16 1.75 7.55 -52.49 -0.40 1.35 16 LS Contribution 369.23 15.07 5.56 5.56 Total: -1.00 -32.31 369.23 -8.92 -41.23 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -6.01 Total: 5.26 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -2.86 Total: -0.48 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.88 Total: -37.94 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -1.47 Total: -26.36 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.03 Total: 12.73 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.31 -8.92 -41.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252605358.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.696 kcal (2) G-P(sol) polarization free energy of solvation -32.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds