Wall clock time and date at job start Tue Mar 31 2020 05:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30218 * 1 3 3 Si 1.86796 * 120.00315 * 2 1 4 4 H 1.48496 * 109.47239 * 269.99969 * 3 2 1 5 5 H 1.48500 * 109.47260 * 30.00121 * 3 2 1 6 6 H 1.48503 * 109.47250 * 149.99804 * 3 2 1 7 7 C 1.40888 * 119.99767 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99977 * 180.02562 * 7 2 1 9 9 C 1.46167 * 120.00033 * 0.02562 * 7 2 1 10 10 O 1.21884 * 119.99950 * 0.02562 * 9 7 2 11 11 N 1.34777 * 120.00385 * 180.02562 * 9 7 2 12 12 N 1.28991 * 120.00283 * 179.97438 * 11 9 7 13 13 C 1.31911 * 120.00286 * 179.97438 * 12 11 9 14 14 C 1.41363 * 120.00278 * 180.02562 * 13 12 11 15 15 C 1.41046 * 120.12539 * 0.02562 * 14 13 12 16 16 C 1.36093 * 119.86878 * 179.97438 * 15 14 13 17 17 C 1.39990 * 120.12905 * 359.97438 * 16 15 14 18 18 N 1.38100 * 119.87461 * 179.97438 * 17 16 15 19 19 C 1.47018 * 110.99776 * 64.35038 * 18 17 16 20 20 C 1.53102 * 109.25668 * 177.60860 * 19 18 17 21 21 O 1.43011 * 109.25763 * 56.84543 * 20 19 18 22 22 C 1.43011 * 113.74404 * 301.33469 * 21 20 19 23 23 C 1.47008 * 110.99863 * 300.71815 * 18 17 16 24 24 C 1.39945 * 120.25476 * 0.25001 * 17 16 15 25 25 N 1.48019 * 119.93985 * 179.74838 * 24 17 16 26 26 O 1.31698 * 120.00389 * 185.11450 * 25 24 17 27 27 O 1.31705 * 119.99332 * 5.11296 * 25 24 17 28 28 C 1.36136 * 120.13154 * 359.48702 * 24 17 16 29 29 H 0.97007 * 119.99714 * 0.02562 * 1 2 3 30 30 H 0.97005 * 120.00032 * 0.02562 * 11 9 7 31 31 H 1.07999 * 119.99622 * 0.02562 * 13 12 11 32 32 H 1.08000 * 120.06936 * 359.97438 * 15 14 13 33 33 H 1.07998 * 119.94283 * 179.97438 * 16 15 14 34 34 H 1.09000 * 109.50479 * 57.67741 * 19 18 17 35 35 H 1.08995 * 109.54303 * 297.56104 * 19 18 17 36 36 H 1.08991 * 109.50744 * 176.78398 * 20 19 18 37 37 H 1.09007 * 109.50348 * 296.91552 * 20 19 18 38 38 H 1.09006 * 109.50625 * 298.73278 * 22 21 20 39 39 H 1.08998 * 109.54658 * 178.62895 * 22 21 20 40 40 H 1.09003 * 109.50918 * 302.32345 * 23 18 17 41 41 H 1.08997 * 109.50822 * 62.45726 * 23 18 17 42 42 H 1.07997 * 120.06987 * 180.23096 * 28 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3022 0.0000 0.0000 3 14 2.2362 1.6176 0.0000 4 1 2.4838 2.0463 -1.4000 5 1 1.4338 2.6526 0.7001 6 1 3.5338 1.4400 0.7001 7 6 2.0066 -1.2202 -0.0005 8 1 3.0866 -1.2202 -0.0001 9 6 1.2757 -2.4860 -0.0017 10 8 0.0568 -2.4859 -0.0026 11 7 1.9495 -3.6532 -0.0017 12 7 1.3044 -4.7703 -0.0022 13 6 1.9639 -5.9128 -0.0027 14 6 1.2570 -7.1370 -0.0038 15 6 -0.1535 -7.1400 -0.0049 16 6 -0.8287 -8.3216 -0.0065 17 6 -0.1261 -9.5324 -0.0075 18 7 -0.8166 -10.7283 -0.0086 19 6 -1.5946 -10.8864 -1.2460 20 6 -2.2948 -12.2478 -1.2318 21 8 -3.1120 -12.3458 -0.0623 22 6 -2.3865 -12.1970 1.1612 23 6 -1.6872 -10.8351 1.1712 24 6 1.2733 -9.5356 -0.0017 25 7 2.0091 -10.8199 0.0027 26 8 3.3217 -10.8265 0.1098 27 8 1.3510 -11.9561 -0.1004 28 6 1.9594 -8.3598 -0.0055 29 1 -0.4850 0.8401 -0.0004 30 1 2.9195 -3.6533 -0.0006 31 1 3.0439 -5.9128 -0.0023 32 1 -0.6966 -6.2065 -0.0045 33 1 -1.9087 -8.3253 -0.0069 34 1 -0.9267 -10.8296 -2.1056 35 1 -2.3404 -10.0943 -1.3115 36 1 -2.9181 -12.3458 -2.1206 37 1 -1.5475 -13.0414 -1.2212 38 1 -1.6419 -12.9890 1.2414 39 1 -3.0755 -12.2586 2.0035 40 1 -1.0870 -10.7408 2.0762 41 1 -2.4345 -10.0420 1.1451 42 1 3.0394 -8.3634 -0.0048 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252605358.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:43 Heat of formation + Delta-G solvation = 12.713031 kcal Electronic energy + Delta-G solvation = -29588.466349 eV Core-core repulsion = 25153.078747 eV Total energy + Delta-G solvation = -4435.387602 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.131 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.06594 -40.83241 -40.14848 -39.26792 -37.83552 -36.87807 -35.30603 -34.86717 -33.66991 -32.89924 -32.21901 -30.94155 -28.86700 -28.21896 -26.95103 -25.07507 -24.83224 -23.96537 -22.64152 -21.84041 -21.37977 -20.18213 -19.16540 -18.97487 -18.43234 -18.04823 -17.70613 -17.28248 -16.91653 -16.57377 -16.25656 -16.15472 -16.11344 -15.94008 -15.91382 -15.73671 -15.18228 -14.83609 -14.58158 -14.32020 -13.68694 -13.50733 -13.36586 -13.25232 -13.06037 -12.86156 -12.78213 -12.57831 -12.34820 -12.34342 -12.17013 -12.07574 -11.69423 -11.59506 -11.23342 -11.09144 -10.86639 -10.76712 -10.66395 -10.22178 -9.69403 -8.84192 -8.52740 -7.10315 -1.71515 -0.67805 0.11490 0.12780 1.08527 1.39095 1.42403 1.56472 2.06765 2.22652 2.29147 2.38827 2.48820 2.93200 3.26834 3.41972 3.51541 3.61622 3.72060 3.78240 3.85536 3.97172 4.07543 4.19962 4.23297 4.23920 4.37694 4.46440 4.51919 4.64602 4.66289 4.77779 4.81372 4.89271 4.96736 5.01679 5.13607 5.17409 5.22507 5.52303 5.60306 5.74225 5.89812 5.92807 6.16533 6.60978 6.71261 7.33412 8.28985 8.43444 Molecular weight = 348.13amu Principal moments of inertia in cm(-1) A = 0.019096 B = 0.002064 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.942744 B =13565.317639 C =14711.637476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.031 3.969 3 Si 1.006 2.994 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.245 1.245 7 C -0.554 4.554 8 H 0.104 0.896 9 C 0.528 3.472 10 O -0.591 6.591 11 N -0.520 5.520 12 N -0.218 5.218 13 C -0.015 4.015 14 C -0.007 4.007 15 C -0.039 4.039 16 C -0.133 4.133 17 C 0.155 3.845 18 N -0.504 5.504 19 C 0.026 3.974 20 C 0.067 3.933 21 O -0.398 6.398 22 C 0.068 3.932 23 C 0.021 3.979 24 C 0.009 3.991 25 N -0.013 5.013 26 O -0.246 6.246 27 O -0.111 6.111 28 C -0.038 4.038 29 H 0.284 0.716 30 H 0.387 0.613 31 H 0.145 0.855 32 H 0.138 0.862 33 H 0.164 0.836 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.120 0.880 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.120 0.880 40 H 0.087 0.913 41 H 0.060 0.940 42 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.625 -18.895 -0.161 18.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.188 4.188 3 Si 0.824 3.176 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.168 1.168 7 C -0.590 4.590 8 H 0.122 0.878 9 C 0.338 3.662 10 O -0.474 6.474 11 N -0.265 5.265 12 N -0.038 5.038 13 C -0.216 4.216 14 C -0.010 4.010 15 C -0.061 4.061 16 C -0.153 4.153 17 C 0.056 3.944 18 N -0.226 5.226 19 C -0.100 4.100 20 C -0.009 4.009 21 O -0.317 6.317 22 C -0.009 4.009 23 C -0.105 4.105 24 C -0.079 4.079 25 N 0.466 4.534 26 O -0.421 6.421 27 O -0.323 6.323 28 C -0.061 4.061 29 H 0.095 0.905 30 H 0.227 0.773 31 H 0.162 0.838 32 H 0.156 0.844 33 H 0.182 0.818 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.138 0.862 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.138 0.862 40 H 0.105 0.895 41 H 0.078 0.922 42 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -2.474 -17.929 -0.127 18.099 hybrid contribution 1.546 0.856 -0.011 1.767 sum -0.928 -17.073 -0.138 17.098 Atomic orbital electron populations 1.69923 1.09972 1.30252 1.32921 1.27175 0.95558 1.05138 0.90903 0.84874 0.78829 0.74140 0.79717 1.18366 1.19620 1.16761 1.21530 0.95355 0.88357 1.53759 0.87838 1.19011 0.87345 0.82138 0.77749 1.90657 1.15629 1.86438 1.54670 1.44760 1.09140 1.02978 1.69670 1.71574 1.32866 0.94029 1.05296 1.22901 0.98475 0.88945 1.11250 1.17482 0.92721 0.90652 1.00163 1.21711 0.93674 0.99402 0.91264 1.21611 1.02060 0.90327 1.01337 1.18738 0.89577 0.90800 0.95250 1.59431 1.29515 1.29045 1.04656 1.22946 0.96359 0.99823 0.90859 1.22754 0.94609 0.94726 0.88846 1.87976 1.35731 1.93205 1.14768 1.22741 0.96183 0.94553 0.87439 1.22996 0.95220 0.99965 0.92274 1.20044 0.90424 0.81347 1.16047 1.50455 1.02597 1.04500 0.95871 1.96273 0.89928 1.96255 1.59595 1.96259 1.68115 1.17150 1.50800 1.20952 1.02528 0.88108 0.94513 0.90514 0.77348 0.83775 0.84408 0.81831 0.89441 0.92324 0.86191 0.91746 0.91883 0.86197 0.89453 0.92200 0.81029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -45.15 11.82 21.98 0.26 -44.89 16 2 C 0.03 1.56 5.52 85.58 0.47 2.03 16 3 Si 1.01 36.41 29.57 68.60 2.03 38.44 16 4 H -0.26 -8.96 7.11 99.48 0.71 -8.25 16 5 H -0.27 -9.56 7.11 99.48 0.71 -8.85 16 6 H -0.24 -8.12 7.11 99.48 0.71 -7.41 16 7 C -0.55 -28.24 9.57 24.98 0.24 -28.00 16 8 H 0.10 4.53 7.86 -2.91 -0.02 4.51 16 9 C 0.53 28.55 7.82 86.30 0.68 29.23 16 10 O -0.59 -37.65 15.35 -4.94 -0.08 -37.72 16 11 N -0.52 -22.01 5.88 -176.61 -1.04 -23.05 16 12 N -0.22 -8.56 9.56 -55.45 -0.53 -9.09 16 13 C -0.01 -0.43 10.39 85.45 0.89 0.46 16 14 C -0.01 -0.18 5.76 -21.14 -0.12 -0.30 16 15 C -0.04 -0.96 9.50 22.46 0.21 -0.75 16 16 C -0.13 -2.64 8.52 22.20 0.19 -2.45 16 17 C 0.16 3.26 4.72 38.99 0.18 3.44 16 18 N -0.50 -9.48 2.45 -693.74 -1.70 -11.18 16 19 C 0.03 0.40 5.39 86.31 0.47 0.87 16 20 C 0.07 0.96 7.01 72.02 0.50 1.46 16 21 O -0.40 -6.80 10.83 -148.98 -1.61 -8.41 16 22 C 0.07 0.96 7.01 72.02 0.50 1.46 16 23 C 0.02 0.33 5.34 86.32 0.46 0.79 16 24 C 0.01 0.22 6.86 36.30 0.25 0.47 16 25 N -0.01 -0.37 4.98 -46.64 -0.23 -0.60 16 26 O -0.25 -7.58 19.13 3.52 0.07 -7.51 16 27 O -0.11 -3.13 17.77 3.51 0.06 -3.06 16 28 C -0.04 -0.85 9.27 22.46 0.21 -0.64 16 29 H 0.28 14.31 8.28 -92.70 -0.77 13.54 16 30 H 0.39 13.09 8.43 -219.72 -1.85 11.24 16 31 H 0.15 3.14 7.95 -2.91 -0.02 3.12 16 32 H 0.14 4.05 7.47 -2.91 -0.02 4.03 16 33 H 0.16 2.58 6.99 -2.91 -0.02 2.56 16 34 H 0.09 1.40 8.13 -2.39 -0.02 1.38 16 35 H 0.06 0.86 7.40 -2.39 -0.02 0.84 16 36 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.06 0.87 7.13 -2.39 -0.02 0.85 16 42 H 0.17 3.33 7.55 -2.91 -0.02 3.30 16 Total: -1.00 -74.14 369.23 1.60 -72.55 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: -0.76 Total: 26.47 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 5.13 Total: 8.07 kcal Atomic # 7 Polarization: -85.56 SS G_CDS: -3.24 Total: -88.81 kcal Atomic # 8 Polarization: -55.15 SS G_CDS: -1.56 Total: -56.71 kcal Atomic # 14 Polarization: 36.41 SS G_CDS: 2.03 Total: 38.44 kcal Total: -74.14 1.60 -72.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252605358.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.261 kcal (2) G-P(sol) polarization free energy of solvation -74.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds