Wall clock time and date at job start Tue Mar 31 2020 05:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42892 * 114.00324 * 2 1 4 4 C 1.53001 * 109.47076 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47137 * 65.00623 * 4 3 2 6 6 C 1.46498 * 120.00281 * 84.99887 * 5 4 3 7 7 C 1.50690 * 109.47101 * 85.10546 * 6 5 4 8 8 H 1.08001 * 120.00281 * 355.94945 * 7 6 5 9 9 C 1.37883 * 120.00090 * 175.95416 * 7 6 5 10 10 N 1.31521 * 119.99520 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00125 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47325 * 269.99598 * 11 9 7 13 13 H 1.48503 * 109.47340 * 30.00142 * 11 9 7 14 14 H 1.48507 * 109.46939 * 149.99778 * 11 9 7 15 15 S 1.65603 * 119.99560 * 264.99851 * 5 4 3 16 16 O 1.42099 * 106.40365 * 17.28781 * 15 5 4 17 17 O 1.42107 * 106.40101 * 150.20412 * 15 5 4 18 18 N 1.65600 * 107.21921 * 263.74014 * 15 5 4 19 19 C 1.47143 * 125.60824 * 263.44633 * 18 15 5 20 20 C 1.54606 * 107.33355 * 180.90903 * 19 18 15 21 21 C 1.53600 * 102.76871 * 20.78737 * 20 19 18 22 22 C 1.53317 * 111.68035 * 205.83744 * 21 20 19 23 23 C 1.55336 * 101.68769 * 217.75547 * 22 21 20 24 24 O 1.44535 * 103.69550 * 35.78395 * 23 22 21 25 25 C 1.44182 * 107.04960 * 320.87140 * 24 23 22 26 26 C 1.47730 * 125.59850 * 83.13881 * 18 15 5 27 27 H 1.08993 * 109.47364 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46459 * 300.00227 * 1 2 3 29 29 H 1.09002 * 109.47020 * 59.99375 * 1 2 3 30 30 H 1.09008 * 109.46892 * 60.00628 * 3 2 1 31 31 H 1.08992 * 109.47534 * 300.00198 * 3 2 1 32 32 H 1.09005 * 109.47267 * 305.00355 * 4 3 2 33 33 H 1.09002 * 109.46923 * 185.00120 * 4 3 2 34 34 H 1.09000 * 109.46854 * 325.09899 * 6 5 4 35 35 H 1.09000 * 109.46956 * 205.10628 * 6 5 4 36 36 H 0.96993 * 120.00439 * 0.02562 * 10 9 7 37 37 H 1.09006 * 109.86782 * 300.34583 * 19 18 15 38 38 H 1.08993 * 109.87107 * 61.47170 * 19 18 15 39 39 H 1.09005 * 110.75133 * 139.10421 * 20 19 18 40 40 H 1.08996 * 110.75306 * 262.46217 * 20 19 18 41 41 H 1.08996 * 110.98537 * 335.85208 * 22 21 20 42 42 H 1.09002 * 110.98464 * 99.65761 * 22 21 20 43 43 H 1.08997 * 110.57970 * 277.23310 * 23 22 21 44 44 H 1.08996 * 110.70681 * 154.39096 * 23 22 21 45 45 H 1.09001 * 110.01274 * 266.82208 * 25 24 23 46 46 H 1.08999 * 110.01258 * 145.44006 * 25 24 23 47 47 H 1.09003 * 110.39107 * 276.32448 * 26 18 15 48 48 H 1.08996 * 110.39433 * 38.72126 * 26 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1844 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1829 1.3881 -2.4444 7 6 5.5711 1.9738 -2.4166 8 1 6.2102 1.8080 -1.5619 9 6 6.0253 2.7216 -3.4823 10 7 5.2471 2.9232 -4.5232 11 14 7.7457 3.4483 -3.4475 12 1 7.6993 4.8016 -2.8381 13 1 8.6365 2.5736 -2.6434 14 1 8.2693 3.5474 -4.8337 15 16 4.2424 -1.0694 -1.3165 16 8 3.5884 -1.6281 -0.1854 17 8 3.9627 -1.4681 -2.6515 18 7 5.8643 -1.3119 -1.0862 19 6 6.8627 -1.4961 -2.1513 20 6 8.2323 -1.7104 -1.4667 21 6 7.8379 -2.1588 -0.0515 22 6 8.9309 -1.8296 0.9721 23 6 8.8758 -3.0725 1.9021 24 8 8.5818 -4.1625 0.9995 25 6 7.6302 -3.6682 0.0356 26 6 6.5475 -1.3725 0.2222 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.6888 1.8462 0.8901 31 1 1.6888 1.8463 -0.8899 32 1 3.8509 0.5682 0.8427 33 1 3.9786 2.1763 0.0902 34 1 3.4488 2.1936 -2.4608 35 1 4.0663 0.7720 -3.3359 36 1 4.3536 2.5462 -4.5411 37 1 6.6075 -2.3698 -2.7512 38 1 6.8989 -0.6084 -2.7827 39 1 8.8002 -2.4900 -1.9746 40 1 8.7973 -0.7790 -1.4334 41 1 9.9048 -1.7458 0.4899 42 1 8.6895 -0.9198 1.5218 43 1 8.0826 -2.9629 2.6415 44 1 9.8364 -3.2298 2.3925 45 1 6.6152 -3.8864 0.3677 46 1 7.8117 -4.1264 -0.9366 47 1 6.7797 -0.3680 0.5763 48 1 5.9295 -1.8991 0.9494 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253397121.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:27 Heat of formation + Delta-G solvation = -161.494490 kcal Electronic energy + Delta-G solvation = -31692.020819 eV Core-core repulsion = 27488.063307 eV Total energy + Delta-G solvation = -4203.957512 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.160 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.34832 -37.83592 -37.01251 -36.54735 -35.56652 -35.12092 -32.82669 -32.15884 -29.94383 -29.43099 -28.84681 -26.44999 -25.70250 -25.37413 -23.09689 -23.00862 -21.95850 -21.61684 -19.61663 -18.51927 -17.50048 -17.06786 -16.70052 -16.35857 -16.22139 -15.94041 -15.44024 -15.23913 -15.00545 -14.74165 -14.50772 -14.12813 -13.80248 -13.61964 -13.20147 -13.08191 -12.98128 -12.76689 -12.59633 -12.09451 -12.03612 -11.98072 -11.88419 -11.61835 -11.54856 -11.43349 -11.38585 -11.11867 -11.04887 -10.95004 -10.78722 -10.61337 -10.58586 -10.53640 -10.46335 -10.21703 -9.72474 -9.45585 -9.39024 -8.59853 -8.48397 -7.96802 -6.48191 -4.22846 1.26278 3.33089 3.35339 3.48230 3.52168 3.83966 4.09279 4.11621 4.26840 4.41640 4.42892 4.72145 4.83617 5.00134 5.10534 5.14662 5.25265 5.32402 5.37332 5.39537 5.45065 5.49637 5.54248 5.56479 5.60311 5.61985 5.68519 5.73164 5.78091 5.81139 5.82805 5.85845 5.96756 6.00580 6.16208 6.17254 6.33597 6.42608 6.51041 6.71908 6.76069 6.99797 7.19435 7.39314 7.53425 7.92776 8.34682 8.69442 9.48925 10.88852 Molecular weight = 348.16amu Principal moments of inertia in cm(-1) A = 0.008119 B = 0.005794 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3448.006426 B = 4831.722705 C = 7265.224620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.375 6.375 3 C 0.039 3.961 4 C 0.137 3.863 5 N -0.984 5.984 6 C 0.236 3.764 7 C -0.615 4.615 8 H 0.057 0.943 9 C 0.022 3.978 10 N -0.906 5.906 11 Si 1.069 2.931 12 H -0.288 1.288 13 H -0.288 1.288 14 H -0.284 1.284 15 S 2.802 3.198 16 O -0.974 6.974 17 O -0.981 6.981 18 N -1.015 6.015 19 C 0.121 3.879 20 C -0.111 4.111 21 C -0.105 4.105 22 C -0.139 4.139 23 C 0.045 3.955 24 O -0.382 6.382 25 C 0.063 3.937 26 C 0.135 3.865 27 H 0.082 0.918 28 H 0.036 0.964 29 H 0.037 0.963 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.023 0.977 35 H 0.039 0.961 36 H 0.271 0.729 37 H 0.062 0.938 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.060 0.940 44 H 0.090 0.910 45 H 0.064 0.936 46 H 0.088 0.912 47 H 0.069 0.931 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.939 -6.466 11.950 13.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.293 6.293 3 C -0.040 4.040 4 C 0.010 3.990 5 N -0.824 5.824 6 C 0.113 3.887 7 C -0.655 4.655 8 H 0.076 0.924 9 C -0.183 4.183 10 N -0.541 5.541 11 Si 0.897 3.103 12 H -0.215 1.215 13 H -0.214 1.214 14 H -0.209 1.209 15 S 2.812 3.188 16 O -0.958 6.958 17 O -0.965 6.965 18 N -0.853 5.853 19 C -0.005 4.005 20 C -0.150 4.150 21 C -0.106 4.106 22 C -0.177 4.177 23 C -0.031 4.031 24 O -0.301 6.301 25 C -0.014 4.014 26 C 0.009 3.991 27 H 0.100 0.900 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.113 0.887 34 H 0.041 0.959 35 H 0.056 0.944 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.103 0.897 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.079 0.921 44 H 0.109 0.891 45 H 0.082 0.918 46 H 0.106 0.894 47 H 0.087 0.913 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.434 -6.592 10.888 13.183 hybrid contribution -1.203 0.147 0.879 1.497 sum 2.231 -6.445 11.767 13.601 Atomic orbital electron populations 1.22707 0.82116 1.02377 0.99414 1.88088 1.18732 1.27271 1.95243 1.23121 0.95468 0.85218 1.00177 1.21078 0.91265 1.00431 0.86254 1.57623 1.80381 1.26732 1.17636 1.19213 0.97224 0.90610 0.81610 1.22358 0.99892 1.36783 1.06449 0.92429 1.25765 1.05085 0.95205 0.92277 1.70753 1.10043 1.43076 1.30240 0.83547 0.74555 0.76094 0.76115 1.21522 1.21367 1.20923 1.01334 0.71432 0.73126 0.72948 1.93574 1.72123 1.77055 1.53079 1.93549 1.83178 1.81806 1.38013 1.59223 1.25858 1.88025 1.12206 1.21754 0.86769 1.02216 0.89741 1.22537 0.97000 1.02168 0.93296 1.22091 0.95723 0.95820 0.97014 1.22970 0.99025 0.99124 0.96629 1.23630 1.01023 0.85834 0.92656 1.88941 1.62926 1.35257 1.43005 1.23056 0.93136 0.91786 0.93394 1.21861 0.92056 0.99559 0.85579 0.89977 0.94498 0.94446 0.92945 0.92807 0.90616 0.88742 0.95881 0.94353 0.91888 0.91985 0.89681 0.90115 0.89945 0.89848 0.89588 0.92127 0.89144 0.91756 0.89388 0.91291 0.90402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.74 9.06 -51.84 -0.47 -7.21 16 3 C 0.04 0.63 6.28 37.16 0.23 0.86 16 4 C 0.14 2.37 5.81 -4.04 -0.02 2.35 16 5 N -0.98 -20.43 2.77 -115.67 -0.32 -20.75 16 6 C 0.24 5.71 4.78 -5.20 -0.02 5.68 16 7 C -0.62 -15.55 9.38 -34.44 -0.32 -15.88 16 8 H 0.06 1.42 7.81 -52.49 -0.41 1.01 16 9 C 0.02 0.59 5.46 -17.81 -0.10 0.49 16 10 N -0.91 -25.99 13.65 55.43 0.76 -25.24 16 11 Si 1.07 23.46 29.90 -169.99 -5.08 18.38 16 12 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 13 H -0.29 -5.87 7.11 56.52 0.40 -5.47 16 14 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 15 S 2.80 58.46 6.23 -107.50 -0.67 57.79 16 16 O -0.97 -20.73 14.89 -64.47 -0.96 -21.69 16 17 O -0.98 -23.80 16.34 -57.17 -0.93 -24.73 16 18 N -1.01 -17.79 3.77 -111.71 -0.42 -18.21 16 19 C 0.12 1.99 6.91 -2.85 -0.02 1.98 16 20 C -0.11 -1.42 5.76 -25.58 -0.15 -1.57 16 21 C -0.10 -1.27 0.74 -153.93 -0.11 -1.39 16 22 C -0.14 -1.37 6.29 -25.33 -0.16 -1.53 16 23 C 0.05 0.44 7.74 38.40 0.30 0.74 16 24 O -0.38 -4.88 11.55 -35.23 -0.41 -5.28 16 25 C 0.06 0.78 7.05 36.96 0.26 1.04 16 26 C 0.14 1.92 6.05 -3.07 -0.02 1.90 16 27 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 31 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 32 H 0.08 1.22 7.43 -51.93 -0.39 0.83 16 33 H 0.09 1.55 8.11 -51.93 -0.42 1.13 16 34 H 0.02 0.57 8.03 -51.93 -0.42 0.15 16 35 H 0.04 1.03 6.72 -51.93 -0.35 0.68 16 36 H 0.27 7.81 7.20 -40.82 -0.29 7.51 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 39 H 0.08 0.89 7.72 -51.93 -0.40 0.49 16 40 H 0.08 1.05 8.05 -51.93 -0.42 0.63 16 41 H 0.08 0.77 7.93 -51.93 -0.41 0.35 16 42 H 0.09 0.76 7.62 -51.93 -0.40 0.36 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.84 7.53 -51.93 -0.39 0.45 16 46 H 0.09 1.04 7.51 -51.93 -0.39 0.65 16 47 H 0.07 0.93 7.77 -51.93 -0.40 0.53 16 48 H 0.08 1.08 7.46 -51.93 -0.39 0.69 16 LS Contribution 392.85 15.07 5.92 5.92 Total: -1.00 -33.24 392.85 -9.68 -42.93 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -8.07 Total: 1.88 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 0.98 Total: -3.79 kcal Atomic # 7 Polarization: -64.20 SS G_CDS: 0.02 Total: -64.19 kcal Atomic # 8 Polarization: -56.15 SS G_CDS: -2.77 Total: -58.92 kcal Atomic # 14 Polarization: 23.46 SS G_CDS: -5.08 Total: 18.38 kcal Atomic # 16 Polarization: 58.46 SS G_CDS: -0.67 Total: 57.79 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.24 -9.68 -42.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253397121.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.566 kcal (2) G-P(sol) polarization free energy of solvation -33.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds