Wall clock time and date at job start Tue Mar 31 2020 06:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48498 * 109.47118 * 270.00438 * 3 2 1 5 5 H 1.48507 * 109.46904 * 30.00095 * 3 2 1 6 6 H 1.48494 * 109.47201 * 150.00270 * 3 2 1 7 7 C 1.37876 * 119.99854 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00510 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99720 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47208 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27843 * 11 10 9 14 14 C 1.46497 * 119.99525 * 179.72583 * 13 11 10 15 15 H 1.09007 * 109.47747 * 35.00142 * 14 13 11 16 16 C 1.50703 * 109.47430 * 274.99668 * 14 13 11 17 17 C 1.38414 * 122.54223 * 140.00065 * 16 14 13 18 18 C 1.33387 * 114.92367 * 179.97438 * 17 16 14 19 19 S 1.75890 * 109.59233 * 0.02562 * 18 17 16 20 20 C 1.33387 * 122.53594 * 319.71235 * 16 14 13 21 21 C 1.50707 * 109.46997 * 154.99586 * 14 13 11 22 22 C 1.38242 * 119.98362 * 39.72531 * 21 14 13 23 23 C 1.38217 * 120.00992 * 179.72475 * 22 21 14 24 24 C 1.38352 * 119.98429 * 0.54993 * 23 22 21 25 25 Cl 1.73603 * 120.00951 * 179.70450 * 24 23 22 26 26 C 1.38348 * 119.97817 * 359.72152 * 24 23 22 27 27 C 1.38219 * 119.98418 * 0.02562 * 26 24 23 28 28 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47500 * 59.99948 * 9 7 2 30 30 H 1.08998 * 109.47585 * 299.99943 * 9 7 2 31 31 H 1.09009 * 109.46730 * 59.99906 * 10 9 7 32 32 H 1.08998 * 109.46846 * 300.00451 * 10 9 7 33 33 H 0.97000 * 119.99894 * 359.71837 * 13 11 10 34 34 H 1.07999 * 122.53887 * 0.02562 * 17 16 14 35 35 H 1.07997 * 125.20584 * 179.97438 * 18 17 16 36 36 H 1.08000 * 125.20309 * 0.02562 * 20 16 14 37 37 H 1.07999 * 119.99427 * 0.02562 * 22 21 14 38 38 H 1.07995 * 120.00470 * 180.27263 * 23 22 21 39 39 H 1.07990 * 120.00752 * 179.97438 * 26 24 23 40 40 H 1.08002 * 119.99168 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5286 -2.6365 -0.0009 12 8 6.1349 -1.5861 -0.0015 13 7 6.2024 -3.8037 -0.0065 14 6 7.6674 -3.8036 -0.0125 15 1 8.0332 -2.9632 0.5775 16 6 8.1640 -3.6765 -1.4297 17 6 9.2535 -2.8932 -1.7694 18 6 9.5615 -2.8913 -3.0672 19 16 8.4368 -3.9226 -3.9419 20 6 7.5903 -4.3146 -2.4509 21 6 8.1723 -5.0927 0.5829 22 6 7.5331 -6.2841 0.2942 23 6 7.9991 -7.4674 0.8354 24 6 9.0985 -7.4579 1.6753 25 17 9.6797 -8.9429 2.3616 26 6 9.7343 -6.2647 1.9684 27 6 9.2705 -5.0826 1.4224 28 1 -0.4850 0.8400 0.0004 29 1 3.8753 -0.6804 0.8888 30 1 3.8746 -0.6800 -0.8911 31 1 3.6579 -3.1506 -0.8908 32 1 3.6585 -3.1502 0.8892 33 1 5.7174 -4.6437 -0.0064 34 1 9.8124 -2.3272 -1.0389 35 1 10.3763 -2.3400 -3.5129 36 1 6.7352 -4.9698 -2.3742 37 1 6.6725 -6.2908 -0.3582 38 1 7.5024 -8.3986 0.6063 39 1 10.5922 -6.2567 2.6242 40 1 9.7670 -4.1511 1.6507 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292320144.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:24 Heat of formation + Delta-G solvation = 9.528987 kcal Electronic energy + Delta-G solvation = -24790.302076 eV Core-core repulsion = 21108.227026 eV Total energy + Delta-G solvation = -3682.075050 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 349.064 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.58665 -39.07411 -37.97257 -36.80340 -34.69951 -33.49276 -31.78157 -31.46260 -30.93857 -29.54332 -27.18049 -25.71769 -23.60940 -23.19943 -21.84867 -20.92750 -19.78770 -18.91217 -17.90679 -17.80134 -17.09511 -16.33240 -16.13677 -15.73688 -15.48217 -15.00251 -14.48973 -14.11488 -13.99319 -13.90965 -13.69070 -13.37374 -13.24268 -13.02141 -12.77317 -12.56611 -12.48724 -12.25188 -11.92367 -11.72433 -11.63707 -11.43080 -11.18159 -10.99192 -10.92437 -10.18278 -10.06111 -9.80303 -9.44776 -9.40705 -9.20057 -9.13028 -8.94308 -8.85914 -8.51485 -8.47765 -6.03775 -4.02565 0.66615 0.89425 0.93083 1.55929 1.76244 1.87104 2.54180 3.06133 3.19683 3.37316 3.39161 3.44071 3.54599 4.35589 4.37821 4.48254 4.50216 4.81991 4.86930 4.88972 4.97846 5.12277 5.27268 5.29000 5.31810 5.41524 5.51278 5.56746 5.77723 5.82641 5.88230 6.03659 6.05968 6.08140 6.16861 6.29309 6.37865 6.56651 6.66380 7.35099 7.42070 7.66052 7.78113 8.48265 8.59976 8.99152 9.59293 11.09051 Molecular weight = 349.06amu Principal moments of inertia in cm(-1) A = 0.010386 B = 0.002791 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2695.377693 B =10029.909158 C =11757.704577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.525 4.525 8 H 0.072 0.928 9 C 0.002 3.998 10 C -0.122 4.122 11 C 0.514 3.486 12 O -0.532 6.532 13 N -0.736 5.736 14 C 0.245 3.755 15 H 0.106 0.894 16 C -0.105 4.105 17 C -0.118 4.118 18 C -0.214 4.214 19 S 0.093 5.907 20 C -0.192 4.192 21 C -0.075 4.075 22 C -0.097 4.097 23 C -0.105 4.105 24 C -0.035 4.035 25 Cl -0.073 7.073 26 C -0.106 4.106 27 C -0.092 4.092 28 H 0.263 0.737 29 H 0.023 0.977 30 H 0.019 0.981 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.398 0.602 34 H 0.140 0.860 35 H 0.163 0.837 36 H 0.161 0.839 37 H 0.131 0.869 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.341 -17.008 -1.097 28.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.563 4.563 8 H 0.091 0.909 9 C -0.036 4.036 10 C -0.161 4.161 11 C 0.303 3.697 12 O -0.407 6.407 13 N -0.390 5.390 14 C 0.137 3.863 15 H 0.124 0.876 16 C -0.119 4.119 17 C -0.148 4.148 18 C -0.349 4.349 19 S 0.356 5.644 20 C -0.328 4.328 21 C -0.076 4.076 22 C -0.116 4.116 23 C -0.124 4.124 24 C -0.062 4.062 25 Cl -0.044 7.044 26 C -0.125 4.125 27 C -0.110 4.110 28 H 0.073 0.927 29 H 0.042 0.958 30 H 0.037 0.963 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.233 0.767 34 H 0.158 0.842 35 H 0.181 0.819 36 H 0.178 0.822 37 H 0.149 0.851 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 23.484 -16.630 -2.579 28.891 hybrid contribution 0.319 0.718 1.415 1.618 sum 23.803 -15.913 -1.164 28.656 Atomic orbital electron populations 1.69911 1.06292 1.26974 1.51052 1.24970 0.94703 0.99223 0.94331 0.86801 0.80623 0.83421 0.78748 1.20253 1.21451 1.18520 1.21103 0.89262 0.94544 1.51357 0.90949 1.19362 0.96410 0.90123 0.97659 1.21678 0.87719 1.03397 1.03349 1.21567 0.91547 0.82662 0.73953 1.90660 1.70665 1.31286 1.48049 1.46311 1.05045 1.09634 1.77995 1.18199 0.81519 0.95257 0.91313 0.87592 1.19081 0.97491 0.99350 0.95945 1.19980 0.97996 1.00743 0.96109 1.25526 1.05292 1.06787 0.97287 1.84243 1.25073 1.44208 1.10828 1.25325 1.05452 1.07034 0.95025 1.19938 0.96160 0.94488 0.96967 1.20893 0.99926 0.91215 0.99555 1.21026 0.95438 0.99157 0.96750 1.20962 0.97789 0.87597 0.99825 1.98378 1.88273 1.33936 1.83817 1.21035 1.00319 0.90680 1.00473 1.20974 0.95876 0.98185 0.96013 0.92714 0.95819 0.96291 0.89626 0.89525 0.76666 0.84224 0.81911 0.82174 0.85090 0.84691 0.84723 0.84683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.92 13.96 55.43 0.77 -27.15 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 22.53 27.47 -169.99 -4.67 17.86 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 6 H -0.26 -6.66 6.54 56.52 0.37 -6.29 16 7 C -0.52 -14.89 9.66 -34.44 -0.33 -15.22 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 9 C 0.00 0.06 3.33 -27.88 -0.09 -0.03 16 10 C -0.12 -2.28 5.64 -27.88 -0.16 -2.43 16 11 C 0.51 8.86 7.79 -10.98 -0.09 8.78 16 12 O -0.53 -11.26 15.65 5.55 0.09 -11.17 16 13 N -0.74 -9.06 4.57 -56.06 -0.26 -9.31 16 14 C 0.25 2.75 2.46 -70.23 -0.17 2.58 16 15 H 0.11 1.33 7.38 -51.93 -0.38 0.95 16 16 C -0.10 -1.21 4.80 -106.25 -0.51 -1.72 16 17 C -0.12 -1.30 9.95 -41.21 -0.41 -1.71 16 18 C -0.21 -2.18 11.23 29.04 0.33 -1.85 16 19 S 0.09 0.96 23.34 -107.50 -2.51 -1.55 16 20 C -0.19 -2.11 10.43 29.04 0.30 -1.80 16 21 C -0.07 -0.68 4.94 -104.62 -0.52 -1.20 16 22 C -0.10 -0.79 8.96 -39.59 -0.35 -1.14 16 23 C -0.11 -0.83 9.83 -39.55 -0.39 -1.22 16 24 C -0.04 -0.29 6.32 -39.50 -0.25 -0.54 16 25 Cl -0.07 -0.59 28.96 -51.86 -1.50 -2.09 16 26 C -0.11 -0.84 9.83 -39.55 -0.39 -1.23 16 27 C -0.09 -0.76 9.67 -39.59 -0.38 -1.14 16 28 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 29 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 30 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 31 H 0.09 1.48 8.14 -51.92 -0.42 1.05 16 32 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.40 3.79 6.85 -40.82 -0.28 3.51 16 34 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 35 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.16 1.50 8.03 -52.49 -0.42 1.08 16 37 H 0.13 0.85 6.90 -52.49 -0.36 0.49 16 38 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.14 0.91 8.04 -52.49 -0.42 0.49 16 LS Contribution 371.70 15.07 5.60 5.60 Total: -1.00 -34.19 371.70 -10.74 -44.92 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -4.75 Total: 0.85 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -3.51 Total: -17.96 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.52 Total: -36.46 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.09 Total: -11.17 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.67 Total: 17.86 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.51 Total: -1.55 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.50 Total: -2.09 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.19 -10.74 -44.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292320144.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.454 kcal (2) G-P(sol) polarization free energy of solvation -34.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds