Wall clock time and date at job start Tue Mar 31 2020 06:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00114 * 2 1 4 4 H 1.48499 * 109.46888 * 239.99840 * 3 2 1 5 5 H 1.48492 * 109.46998 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46887 * 120.00149 * 3 2 1 7 7 C 1.37881 * 119.99823 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99982 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00172 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47118 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47169 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99740 * 359.97438 * 11 10 9 13 13 N 1.34782 * 120.00274 * 180.02562 * 11 10 9 14 14 C 1.46495 * 119.99747 * 180.02562 * 13 11 10 15 15 H 1.09004 * 109.47584 * 324.99346 * 14 13 11 16 16 C 1.50695 * 109.47342 * 85.00013 * 14 13 11 17 17 C 1.38422 * 122.53779 * 219.73155 * 16 14 13 18 18 C 1.33395 * 114.91909 * 179.75512 * 17 16 14 19 19 S 1.75881 * 109.59143 * 0.48716 * 18 17 16 20 20 C 1.33388 * 122.53957 * 40.02379 * 16 14 13 21 21 C 1.50706 * 109.46786 * 204.99952 * 14 13 11 22 22 C 1.38244 * 119.98773 * 139.99975 * 21 14 13 23 23 C 1.38217 * 120.01084 * 180.02562 * 22 21 14 24 24 C 1.38351 * 119.98541 * 0.25893 * 23 22 21 25 25 Cl 1.73604 * 120.00786 * 179.69323 * 24 23 22 26 26 C 1.38349 * 119.97465 * 359.42086 * 24 23 22 27 27 C 1.38212 * 119.98525 * 0.59771 * 26 24 23 28 28 H 0.96998 * 120.00282 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.46490 * 60.00787 * 9 7 2 30 30 H 1.08999 * 109.47514 * 300.00700 * 9 7 2 31 31 H 1.08999 * 109.47175 * 60.00978 * 10 9 7 32 32 H 1.08999 * 109.47452 * 300.00680 * 10 9 7 33 33 H 0.97000 * 119.99443 * 359.97438 * 13 11 10 34 34 H 1.07998 * 122.54406 * 0.02562 * 17 16 14 35 35 H 1.08006 * 125.20457 * 180.20595 * 18 17 16 36 36 H 1.07999 * 125.20488 * 359.97438 * 20 16 14 37 37 H 1.07999 * 119.99331 * 0.02562 * 22 21 14 38 38 H 1.08002 * 120.00169 * 179.97438 * 23 22 21 39 39 H 1.08008 * 120.00633 * 180.29755 * 26 24 23 40 40 H 1.08001 * 119.99190 * 179.72131 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4917 -4.9672 -0.0012 12 8 0.2788 -4.9672 -0.0011 13 7 2.1655 -6.1345 -0.0008 14 6 1.4330 -7.4031 -0.0019 15 1 0.5216 -7.2971 0.5866 16 6 1.0761 -7.7758 -1.4178 17 6 -0.1446 -8.3342 -1.7555 18 6 -0.3014 -8.5998 -3.0533 19 16 1.1553 -8.1463 -3.9283 20 6 1.9147 -7.5979 -2.4397 21 6 2.2963 -8.4822 0.5992 22 6 1.7374 -9.4248 1.4420 23 6 2.5289 -10.4144 1.9940 24 6 3.8816 -10.4583 1.7072 25 17 4.8778 -11.6962 2.4065 26 6 4.4391 -9.5186 0.8584 27 6 3.6467 -8.5293 0.3073 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8904 30 1 0.6245 -2.5572 0.8896 31 1 2.8717 -3.6045 0.8895 32 1 2.8719 -3.6043 -0.8904 33 1 3.1355 -6.1344 -0.0004 34 1 -0.9136 -8.5355 -1.0244 35 1 -1.1858 -9.0318 -3.4981 36 1 2.9080 -7.1804 -2.3645 37 1 0.6822 -9.3880 1.6691 38 1 2.0922 -11.1505 2.6527 39 1 5.4942 -9.5552 0.6304 40 1 4.0826 -7.7930 -0.3517 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292320148.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:27 Heat of formation + Delta-G solvation = 6.786993 kcal Electronic energy + Delta-G solvation = -24716.355508 eV Core-core repulsion = 21034.161556 eV Total energy + Delta-G solvation = -3682.193951 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 349.064 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.51537 -38.97937 -37.88410 -36.77175 -34.60302 -33.45542 -31.69912 -31.38878 -30.66531 -29.46621 -26.98491 -25.44863 -23.57619 -23.15348 -21.98839 -21.03670 -19.73905 -18.84858 -17.83078 -17.69383 -16.84092 -16.25572 -15.93701 -15.65904 -15.34502 -14.87702 -14.49488 -14.33466 -13.94834 -13.87705 -13.62717 -13.28803 -13.15548 -12.94933 -12.70522 -12.36285 -12.17598 -12.12834 -11.86494 -11.67060 -11.58165 -11.17801 -11.14709 -10.92744 -10.87367 -10.62759 -9.96451 -9.67998 -9.40603 -9.31081 -9.13968 -8.99913 -8.87024 -8.79659 -8.41517 -8.32174 -5.96327 -4.00839 0.70925 0.93273 0.98955 1.61861 1.79102 1.92893 2.60876 3.18238 3.26924 3.34053 3.38679 3.40045 3.48497 4.39523 4.43482 4.47390 4.51873 4.88323 4.92483 4.94048 5.02883 5.19357 5.31810 5.35170 5.38568 5.51364 5.55950 5.66354 5.82166 5.86148 5.94568 6.12179 6.20265 6.21040 6.23992 6.35522 6.42765 6.66509 6.87022 7.73246 7.79146 7.85574 8.06626 8.37855 8.73109 9.07409 9.62644 11.14556 Molecular weight = 349.06amu Principal moments of inertia in cm(-1) A = 0.009995 B = 0.002667 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.612989 B =10495.417599 C =12373.479849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.038 3.962 10 C -0.129 4.129 11 C 0.513 3.487 12 O -0.526 6.526 13 N -0.738 5.738 14 C 0.245 3.755 15 H 0.106 0.894 16 C -0.104 4.104 17 C -0.117 4.117 18 C -0.213 4.213 19 S 0.090 5.910 20 C -0.193 4.193 21 C -0.073 4.073 22 C -0.092 4.092 23 C -0.106 4.106 24 C -0.036 4.036 25 Cl -0.074 7.074 26 C -0.106 4.106 27 C -0.097 4.097 28 H 0.261 0.739 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.396 0.604 34 H 0.140 0.860 35 H 0.163 0.837 36 H 0.160 0.840 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.228 -25.854 -1.058 26.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.566 4.566 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.169 4.169 11 C 0.302 3.698 12 O -0.400 6.400 13 N -0.392 5.392 14 C 0.137 3.863 15 H 0.124 0.876 16 C -0.117 4.117 17 C -0.148 4.148 18 C -0.348 4.348 19 S 0.354 5.646 20 C -0.329 4.329 21 C -0.074 4.074 22 C -0.110 4.110 23 C -0.125 4.125 24 C -0.062 4.062 25 Cl -0.045 7.045 26 C -0.124 4.124 27 C -0.116 4.116 28 H 0.071 0.929 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.231 0.769 34 H 0.158 0.842 35 H 0.181 0.819 36 H 0.178 0.822 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.685 -25.867 -2.540 26.838 hybrid contribution 0.587 0.870 1.442 1.784 sum 7.272 -24.998 -1.098 26.057 Atomic orbital electron populations 1.69982 1.06049 1.26705 1.50064 1.25019 0.94820 0.99201 0.95296 0.86658 0.79560 0.83211 0.78543 1.20261 1.21281 1.20240 1.21178 0.92867 0.91023 1.51557 0.92687 1.18885 0.93131 0.89297 0.98612 1.21873 1.00765 0.91800 1.02476 1.21595 0.88745 0.85416 0.74043 1.90678 1.14352 1.87408 1.47539 1.46354 1.09813 1.04725 1.78332 1.18191 0.95106 0.81781 0.91245 0.87597 1.19093 0.94308 1.02349 0.95996 1.19992 0.97519 1.01170 0.96117 1.25520 1.02381 1.09683 0.97262 1.84207 1.08648 1.60657 1.11085 1.25304 1.04194 1.08325 0.95028 1.19959 0.94133 0.96500 0.96837 1.20986 1.00369 0.93702 0.95990 1.21036 0.91643 0.99335 1.00495 1.20956 0.92096 0.93426 0.99754 1.98376 1.69676 1.53119 1.83322 1.21017 1.00677 0.94053 0.96676 1.20889 0.93044 0.98127 0.99543 0.92887 0.95831 0.95827 0.90182 0.90276 0.76871 0.84193 0.81911 0.82235 0.84645 0.84735 0.84747 0.85121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.36 13.29 55.43 0.74 -26.62 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.53 -14.87 9.11 -34.44 -0.31 -15.19 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 10 C -0.13 -2.55 5.64 -27.89 -0.16 -2.70 16 11 C 0.51 9.43 7.79 -10.98 -0.09 9.35 16 12 O -0.53 -11.93 15.64 5.55 0.09 -11.84 16 13 N -0.74 -9.65 4.56 -56.07 -0.26 -9.91 16 14 C 0.24 2.91 2.46 -70.24 -0.17 2.74 16 15 H 0.11 1.42 7.38 -51.93 -0.38 1.04 16 16 C -0.10 -1.26 4.80 -106.25 -0.51 -1.77 16 17 C -0.12 -1.37 9.95 -41.21 -0.41 -1.78 16 18 C -0.21 -2.30 11.23 29.04 0.33 -1.97 16 19 S 0.09 0.98 23.34 -107.50 -2.51 -1.53 16 20 C -0.19 -2.22 10.43 29.04 0.30 -1.92 16 21 C -0.07 -0.71 4.94 -104.62 -0.52 -1.22 16 22 C -0.09 -0.80 9.67 -39.59 -0.38 -1.18 16 23 C -0.11 -0.88 9.83 -39.55 -0.39 -1.27 16 24 C -0.04 -0.31 6.32 -39.50 -0.25 -0.56 16 25 Cl -0.07 -0.61 28.96 -51.86 -1.50 -2.12 16 26 C -0.11 -0.86 9.83 -39.55 -0.39 -1.25 16 27 C -0.10 -0.83 8.96 -39.59 -0.35 -1.18 16 28 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 30 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 31 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 32 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.40 4.03 6.87 -40.82 -0.28 3.75 16 34 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16 35 H 0.16 1.37 8.06 -52.48 -0.42 0.95 16 36 H 0.16 1.58 8.03 -52.49 -0.42 1.16 16 37 H 0.14 0.98 8.04 -52.49 -0.42 0.56 16 38 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 40 H 0.13 0.90 6.92 -52.49 -0.36 0.54 16 LS Contribution 375.31 15.07 5.66 5.66 Total: -1.00 -34.12 375.31 -11.12 -45.24 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -4.79 Total: 1.96 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: -3.52 Total: -17.42 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.48 Total: -36.53 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.09 Total: -11.84 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.51 Total: -1.53 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.50 Total: -2.12 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.12 -11.12 -45.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292320148.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.024 kcal (2) G-P(sol) polarization free energy of solvation -34.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds