Wall clock time and date at job start Tue Mar 31 2020 05:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47025 * 2 1 4 4 C 1.53009 * 109.46947 * 119.99186 * 2 1 3 5 5 C 1.50701 * 109.46816 * 295.00387 * 4 2 1 6 6 C 1.38263 * 119.98640 * 90.00258 * 5 4 2 7 7 C 1.38223 * 120.05101 * 179.97438 * 6 5 4 8 8 C 1.38220 * 120.02611 * 0.02562 * 7 6 5 9 9 C 1.38438 * 119.97351 * 359.97438 * 8 7 6 10 10 F 1.35102 * 120.02731 * 179.97438 * 9 8 7 11 11 C 1.38176 * 119.98312 * 269.99540 * 5 4 2 12 12 C 1.50695 * 109.47767 * 239.99183 * 2 1 3 13 13 O 1.21275 * 120.00359 * 246.57835 * 12 2 1 14 14 N 1.34778 * 119.99850 * 66.57356 * 12 2 1 15 15 C 1.46971 * 120.59307 * 3.07723 * 14 12 2 16 16 C 1.53808 * 108.39620 * 124.76035 * 15 14 12 17 17 N 1.46958 * 108.58300 * 49.63747 * 16 15 14 18 18 C 1.34776 * 120.59647 * 124.62456 * 17 16 15 19 19 O 1.21692 * 120.00152 * 175.07060 * 18 17 16 20 20 C 1.46376 * 119.99632 * 355.06910 * 18 17 16 21 21 H 1.08000 * 120.00258 * 5.51007 * 20 18 17 22 22 C 1.40048 * 119.99698 * 185.51447 * 20 18 17 23 23 N 1.30673 * 120.00449 * 359.97438 * 22 20 18 24 24 Si 1.86797 * 120.00049 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46969 * 59.99906 * 24 22 20 26 26 H 1.48499 * 109.47546 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47260 * 300.00019 * 24 22 20 28 28 C 1.46973 * 118.81276 * 304.64938 * 17 16 15 29 29 C 1.46968 * 120.59589 * 183.36106 * 14 12 2 30 30 H 1.09008 * 109.47181 * 65.76868 * 1 2 3 31 31 H 1.09006 * 109.47320 * 185.76685 * 1 2 3 32 32 H 1.08994 * 109.47523 * 305.76986 * 1 2 3 33 33 H 1.08996 * 109.47006 * 175.00138 * 4 2 1 34 34 H 1.08999 * 109.46688 * 55.00026 * 4 2 1 35 35 H 1.08003 * 119.97734 * 0.26833 * 6 5 4 36 36 H 1.08001 * 119.99175 * 180.02562 * 7 6 5 37 37 H 1.08000 * 120.01605 * 179.97438 * 8 7 6 38 38 H 1.07995 * 120.02001 * 359.97438 * 11 5 4 39 39 H 1.09001 * 109.60817 * 244.54501 * 15 14 12 40 40 H 1.08999 * 109.60543 * 5.05008 * 15 14 12 41 41 H 1.08999 * 109.73770 * 289.84570 * 16 15 14 42 42 H 1.09000 * 109.53088 * 169.30950 * 16 15 14 43 43 H 0.96993 * 120.00434 * 179.97438 * 23 22 20 44 44 H 1.08999 * 109.60462 * 295.47993 * 28 17 16 45 45 H 1.09000 * 109.75058 * 175.05291 * 28 17 16 46 46 H 1.08998 * 109.60860 * 354.94153 * 29 14 12 47 47 H 1.08996 * 109.61087 * 115.45923 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.6411 0.0574 2.4766 6 6 0.4350 -0.2049 3.0996 7 6 0.0681 0.5079 4.2256 8 6 0.9066 1.4843 4.7297 9 6 2.1144 1.7478 4.1067 10 9 2.9346 2.7023 4.5982 11 6 2.4811 1.0329 2.9787 12 6 2.0324 -0.7105 -1.2303 13 8 2.6282 -1.7614 -1.1229 14 7 1.8196 -0.1782 -2.4500 15 6 1.1587 1.1269 -2.5917 16 6 2.0754 2.0485 -3.4138 17 7 2.4946 1.3317 -4.6263 18 6 2.2809 1.8636 -5.8461 19 8 2.7115 1.3046 -6.8375 20 6 1.5310 3.1137 -5.9782 21 1 1.2258 3.6562 -5.0956 22 6 1.2092 3.6061 -7.2491 23 7 1.5788 2.9500 -8.3170 24 14 0.2515 5.2010 -7.4178 25 1 1.0167 6.3068 -6.7878 26 1 0.0401 5.5017 -8.8566 27 1 -1.0641 5.0622 -6.7432 28 6 3.1504 0.0240 -4.4849 29 6 2.2387 -0.8952 -3.6626 30 1 -0.3634 0.4218 -0.9372 31 1 -0.3634 -1.0225 0.1033 32 1 -0.3634 0.6007 0.8337 33 1 3.1262 -0.7993 1.2058 34 1 1.6052 -1.7196 1.2954 35 1 -0.2189 -0.9707 2.7090 36 1 -0.8741 0.3020 4.7117 37 1 0.6195 2.0415 5.6092 38 1 3.4233 1.2372 2.4923 39 1 0.2060 1.0005 -3.1060 40 1 0.9903 1.5604 -1.6059 41 1 2.9529 2.3154 -2.8248 42 1 1.5304 2.9506 -3.6920 43 1 1.3556 3.2908 -9.1972 44 1 4.1044 0.1468 -3.9723 45 1 3.3177 -0.4125 -5.4696 46 1 2.7838 -1.7971 -3.3843 47 1 1.3612 -1.1620 -4.2515 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330595121.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:51 Heat of formation + Delta-G solvation = -87.510320 kcal Electronic energy + Delta-G solvation = -30514.114043 eV Core-core repulsion = 26190.293564 eV Total energy + Delta-G solvation = -4323.820479 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 348.164 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.16163 -40.48663 -39.41109 -38.02086 -35.90678 -35.19973 -33.12409 -32.52639 -31.69720 -30.95659 -30.39232 -27.45565 -27.14381 -26.16284 -24.13457 -23.22997 -22.95314 -22.05910 -21.13045 -19.67115 -18.47643 -17.78069 -17.09516 -16.64249 -16.48939 -16.14256 -16.04408 -15.83503 -15.66593 -15.30417 -14.58062 -14.52380 -14.33973 -14.19570 -14.03888 -13.94329 -13.65226 -13.34021 -13.05834 -12.68110 -12.65190 -12.46561 -12.29665 -11.97076 -11.88990 -11.72161 -11.49761 -11.37761 -11.29601 -11.21473 -11.17473 -11.01348 -10.97663 -10.74733 -10.31669 -10.12977 -9.61432 -9.26312 -8.97074 -8.95247 -8.67533 -7.69537 -7.29861 -6.28869 -4.75165 0.81407 0.86243 2.69086 3.02746 3.08888 3.14796 3.16014 3.27294 3.90517 4.00296 4.24434 4.40832 4.43318 4.46584 4.54376 4.65616 4.76511 4.77417 4.88949 5.01818 5.06266 5.26912 5.29313 5.38078 5.46989 5.48401 5.51995 5.54580 5.60523 5.63411 5.73195 5.78885 5.87797 5.90010 5.91821 5.96732 5.97684 6.04976 6.21883 6.23523 6.31960 6.48727 6.56324 6.69895 7.35399 7.45118 7.53823 8.00161 8.21395 8.25179 8.92341 9.30438 10.47151 10.65538 Molecular weight = 348.16amu Principal moments of inertia in cm(-1) A = 0.013662 B = 0.002414 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.036499 B =11594.282149 C =12725.937279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.105 4.105 3 H 0.098 0.902 4 C -0.063 4.063 5 C -0.047 4.047 6 C -0.125 4.125 7 C -0.090 4.090 8 C -0.161 4.161 9 C 0.100 3.900 10 F -0.141 7.141 11 C -0.151 4.151 12 C 0.518 3.482 13 O -0.550 6.550 14 N -0.602 5.602 15 C 0.086 3.914 16 C 0.108 3.892 17 N -0.643 5.643 18 C 0.559 3.441 19 O -0.575 6.575 20 C -0.545 4.545 21 H 0.073 0.927 22 C 0.088 3.912 23 N -0.767 5.767 24 Si 0.907 3.093 25 H -0.267 1.267 26 H -0.280 1.280 27 H -0.267 1.267 28 C 0.108 3.892 29 C 0.099 3.901 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.136 0.864 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.047 0.953 42 H 0.106 0.894 43 H 0.270 0.730 44 H 0.046 0.954 45 H 0.095 0.905 46 H 0.092 0.908 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.065 -3.194 23.787 24.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.126 4.126 3 H 0.116 0.884 4 C -0.100 4.100 5 C -0.047 4.047 6 C -0.143 4.143 7 C -0.108 4.108 8 C -0.180 4.180 9 C 0.081 3.919 10 F -0.119 7.119 11 C -0.170 4.170 12 C 0.306 3.694 13 O -0.429 6.429 14 N -0.335 5.335 15 C -0.038 4.038 16 C -0.018 4.018 17 N -0.381 5.381 18 C 0.365 3.635 19 O -0.458 6.458 20 C -0.582 4.582 21 H 0.091 0.909 22 C -0.132 4.132 23 N -0.395 5.395 24 Si 0.731 3.269 25 H -0.192 1.192 26 H -0.205 1.205 27 H -0.192 1.192 28 C -0.017 4.017 29 C -0.024 4.024 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.148 0.852 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.153 0.847 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.065 0.935 42 H 0.124 0.876 43 H 0.081 0.919 44 H 0.064 0.936 45 H 0.113 0.887 46 H 0.110 0.890 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.463 -4.032 23.045 23.817 hybrid contribution -0.368 1.153 0.101 1.215 sum -4.831 -2.879 23.146 23.819 Atomic orbital electron populations 1.21981 0.92582 1.02983 1.03335 1.21243 0.98005 1.00898 0.92430 0.88400 1.20455 1.02448 0.98179 0.88957 1.19757 0.93671 0.95089 0.96180 1.21185 0.96443 1.00674 0.96009 1.21013 0.99241 0.94734 0.95778 1.21148 0.93932 1.00914 1.01971 1.17719 0.89742 0.89497 0.94986 1.91509 1.71607 1.61658 1.87173 1.21103 1.01804 0.97619 0.96432 1.20520 0.79136 0.85364 0.84407 1.90663 1.42190 1.23685 1.86346 1.48079 1.58887 1.20706 1.05796 1.22534 0.96909 0.83279 1.01033 1.21898 0.97101 0.95854 0.86928 1.48184 1.64410 1.19179 1.06363 1.18285 0.79696 0.85683 0.79803 1.90603 1.54707 1.64455 1.35987 1.20900 1.37429 1.06997 0.92860 0.90920 1.25726 0.94481 0.97588 0.95433 1.69989 1.35142 1.35924 0.98427 0.86443 0.80379 0.82191 0.77840 1.19192 1.20524 1.19210 1.21490 0.93905 0.85842 1.00428 1.22092 0.99532 0.95876 0.84944 0.91239 0.91947 0.91157 0.89849 0.89631 0.85189 0.85022 0.84936 0.84651 0.90584 0.89413 0.93515 0.87576 0.91901 0.93610 0.88652 0.88964 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 8.16 37.15 0.30 -0.95 16 2 C -0.10 -1.03 1.86 -91.77 -0.17 -1.20 16 3 H 0.10 0.90 7.23 -51.93 -0.38 0.52 16 4 C -0.06 -0.58 4.14 -27.88 -0.12 -0.70 16 5 C -0.05 -0.39 4.72 -104.63 -0.49 -0.88 16 6 C -0.12 -0.89 8.11 -39.58 -0.32 -1.21 16 7 C -0.09 -0.58 10.04 -39.59 -0.40 -0.98 16 8 C -0.16 -1.22 10.03 -39.51 -0.40 -1.61 16 9 C 0.10 0.92 7.30 -39.42 -0.29 0.63 16 10 F -0.14 -1.47 17.27 2.25 0.04 -1.43 16 11 C -0.15 -1.35 9.68 -39.51 -0.38 -1.73 16 12 C 0.52 7.15 7.00 -10.99 -0.08 7.08 16 13 O -0.55 -9.28 15.40 5.56 0.09 -9.19 16 14 N -0.60 -8.76 2.94 -172.22 -0.51 -9.27 16 15 C 0.09 1.15 5.14 -3.36 -0.02 1.13 16 16 C 0.11 1.80 6.52 -3.37 -0.02 1.78 16 17 N -0.64 -13.82 2.95 -173.88 -0.51 -14.33 16 18 C 0.56 15.19 7.62 -12.99 -0.10 15.09 16 19 O -0.58 -18.04 14.47 5.20 0.08 -17.96 16 20 C -0.55 -14.42 8.88 -35.63 -0.32 -14.73 16 21 H 0.07 1.71 5.63 -52.49 -0.30 1.41 16 22 C 0.09 2.34 5.50 -17.37 -0.10 2.25 16 23 N -0.77 -22.21 11.84 55.55 0.66 -21.55 16 24 Si 0.91 19.12 29.56 -169.99 -5.02 14.10 16 25 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 26 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 27 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 28 C 0.11 2.08 6.58 -3.59 -0.02 2.05 16 29 C 0.10 1.62 6.60 -3.60 -0.02 1.59 16 30 H 0.07 0.60 5.84 -51.92 -0.30 0.30 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.50 6.65 -51.93 -0.35 0.15 16 33 H 0.08 0.85 8.00 -51.93 -0.42 0.43 16 34 H 0.09 0.81 8.08 -51.93 -0.42 0.39 16 35 H 0.13 0.73 8.04 -52.48 -0.42 0.31 16 36 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 37 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 38 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.09 0.88 4.90 -51.93 -0.25 0.63 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.11 1.81 5.29 -51.93 -0.27 1.54 16 43 H 0.27 7.13 8.29 -40.82 -0.34 6.79 16 44 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.10 2.03 7.03 -51.93 -0.36 1.66 16 46 H 0.09 1.48 6.99 -51.93 -0.36 1.11 16 47 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 380.47 15.07 5.73 5.73 Total: -1.00 -34.51 380.47 -8.74 -43.25 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -6.35 Total: 3.05 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: -2.94 Total: 7.60 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: -0.36 Total: -45.15 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: 0.16 Total: -27.15 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.10 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.51 -8.74 -43.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330595121.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.258 kcal (2) G-P(sol) polarization free energy of solvation -34.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds