Wall clock time and date at job start Tue Mar 31 2020 05:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30629 * 1 3 3 Si 1.86793 * 119.99784 * 2 1 4 4 H 1.48505 * 109.47191 * 239.99981 * 3 2 1 5 5 H 1.48499 * 109.47461 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47030 * 120.00362 * 3 2 1 7 7 C 1.40143 * 120.00307 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00035 * 180.02562 * 7 2 1 9 9 C 1.41529 * 119.99850 * 359.97438 * 7 2 1 10 10 O 1.21809 * 120.00167 * 0.02562 * 9 7 2 11 11 N 1.34780 * 120.00071 * 180.02562 * 9 7 2 12 12 C 1.38876 * 119.99898 * 185.09414 * 11 9 7 13 13 C 1.39394 * 119.60791 * 174.91371 * 12 11 9 14 14 C 1.38082 * 119.20045 * 180.02562 * 13 12 11 15 15 C 1.39694 * 118.43091 * 0.02562 * 14 13 12 16 16 S 1.76195 * 120.42638 * 179.97438 * 15 14 13 17 17 C 1.81406 * 103.00043 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47198 * 180.02562 * 17 16 15 19 19 C 1.38234 * 120.00990 * 270.00184 * 18 17 16 20 20 C 1.38217 * 120.01488 * 179.97438 * 19 18 17 21 21 C 1.38263 * 120.02839 * 359.97438 * 20 19 18 22 22 C 1.38190 * 120.00954 * 0.02562 * 21 20 19 23 23 C 1.38334 * 120.00490 * 90.00221 * 18 17 16 24 24 Cl 1.73601 * 120.01554 * 359.97438 * 23 18 17 25 25 C 1.39181 * 119.14641 * 0.25028 * 15 14 13 26 26 N 1.31738 * 120.72125 * 359.47598 * 25 15 14 27 27 H 0.96991 * 120.00423 * 0.02562 * 1 2 3 28 28 H 0.97001 * 119.99736 * 5.08970 * 11 9 7 29 29 H 1.08004 * 120.39989 * 0.03982 * 13 12 11 30 30 H 1.08008 * 120.78415 * 179.97438 * 14 13 12 31 31 H 1.08998 * 109.46862 * 60.00072 * 17 16 15 32 32 H 1.09003 * 109.46616 * 300.00358 * 17 16 15 33 33 H 1.08001 * 119.98951 * 359.97438 * 19 18 17 34 34 H 1.08001 * 119.98470 * 180.26823 * 20 19 18 35 35 H 1.07999 * 119.99390 * 180.02562 * 21 20 19 36 36 H 1.08000 * 120.00540 * 180.02562 * 22 21 20 37 37 H 1.08001 * 119.63771 * 179.74861 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 3.0940 1.6964 -1.2125 5 1 1.2752 2.7464 -0.0006 6 1 3.0940 1.6964 1.2125 7 6 2.0071 -1.2136 -0.0005 8 1 3.0870 -1.2136 -0.0001 9 6 1.2995 -2.4393 -0.0005 10 8 0.0814 -2.4394 -0.0005 11 7 1.9734 -3.6065 -0.0005 12 6 1.2831 -4.8069 -0.1073 13 6 1.9924 -6.0021 -0.2137 14 6 1.2976 -7.1906 -0.3200 15 6 -0.0987 -7.1473 -0.3172 16 16 -1.0378 -8.6321 -0.4507 17 6 -2.7509 -8.0377 -0.3980 18 6 -3.6926 -9.2095 -0.5028 19 6 -4.1244 -9.6406 -1.7432 20 6 -4.9878 -10.7157 -1.8395 21 6 -5.4197 -11.3608 -0.6954 22 6 -4.9888 -10.9307 0.5451 23 6 -4.1253 -9.8538 0.6423 24 17 -3.5830 -9.3134 2.2003 25 6 -0.7384 -5.9156 -0.2134 26 7 -0.0421 -4.8023 -0.1084 27 1 -0.4850 0.8399 -0.0004 28 1 2.9405 -3.6081 0.0740 29 1 3.0725 -5.9987 -0.2128 30 1 1.8213 -8.1315 -0.4042 31 1 -2.9245 -7.3559 -1.2305 32 1 -2.9251 -7.5148 0.5424 33 1 -3.7870 -9.1374 -2.6372 34 1 -5.3214 -11.0549 -2.8090 35 1 -6.0940 -12.2010 -0.7713 36 1 -5.3259 -11.4349 1.4387 37 1 -1.8176 -5.8725 -0.2145 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358409334.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:47 Heat of formation + Delta-G solvation = 29.003532 kcal Electronic energy + Delta-G solvation = -23571.023519 eV Core-core repulsion = 19851.678516 eV Total energy + Delta-G solvation = -3719.345002 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 348.044 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.73854 -39.70733 -37.25070 -36.64139 -33.70829 -33.29326 -32.41107 -31.86450 -31.05984 -29.64755 -27.44656 -26.59427 -23.40633 -23.04494 -22.80875 -21.82639 -20.07809 -17.85678 -17.59571 -16.95963 -16.63280 -16.07881 -15.81548 -15.61165 -15.22890 -15.02295 -14.22231 -14.13308 -14.04907 -13.87354 -13.54657 -13.44866 -13.24641 -12.66644 -12.53349 -12.31924 -12.00587 -11.82587 -11.68721 -11.66634 -11.33430 -11.13642 -10.97689 -10.63859 -10.57124 -10.36907 -10.18585 -9.38728 -9.22726 -8.96821 -8.95129 -8.77967 -8.15751 -7.47166 -6.74659 -6.33176 -4.89091 0.61922 0.87859 1.57940 1.80885 1.82500 1.91622 2.55156 3.07181 3.12250 3.14203 3.35416 3.94419 4.19861 4.21974 4.32219 4.38308 4.58099 4.60396 4.82684 4.96078 5.02664 5.13210 5.16734 5.19309 5.43519 5.46052 5.57968 5.66593 5.79114 5.85264 5.99040 6.05187 6.06173 6.24065 6.37515 6.42531 6.85536 7.23588 7.58001 7.94402 8.05662 8.63110 8.80524 9.32789 10.41549 10.64483 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.020228 B = 0.002155 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.880169 B =12991.237515 C =13402.709624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.747 5.747 2 C 0.087 3.913 3 Si 0.914 3.086 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.540 4.540 8 H 0.069 0.931 9 C 0.529 3.471 10 O -0.517 6.517 11 N -0.670 5.670 12 C 0.394 3.606 13 C -0.227 4.227 14 C -0.021 4.021 15 C -0.216 4.216 16 S -0.106 6.106 17 C -0.076 4.076 18 C -0.061 4.061 19 C -0.089 4.089 20 C -0.116 4.116 21 C -0.105 4.105 22 C -0.112 4.112 23 C -0.021 4.021 24 Cl -0.056 7.056 25 C 0.137 3.863 26 N -0.455 5.455 27 H 0.273 0.727 28 H 0.398 0.602 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.136 0.864 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.721 -21.534 -1.689 22.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C -0.136 4.136 3 Si 0.738 3.262 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.575 4.575 8 H 0.087 0.913 9 C 0.336 3.664 10 O -0.394 6.394 11 N -0.313 5.313 12 C 0.158 3.842 13 C -0.254 4.254 14 C -0.052 4.052 15 C -0.333 4.333 16 S 0.135 5.865 17 C -0.224 4.224 18 C -0.063 4.063 19 C -0.109 4.109 20 C -0.134 4.134 21 C -0.125 4.125 22 C -0.131 4.131 23 C -0.050 4.050 24 Cl -0.027 7.027 25 C -0.029 4.029 26 N -0.170 5.170 27 H 0.084 0.916 28 H 0.232 0.768 29 H 0.150 0.850 30 H 0.148 0.852 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.154 0.846 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.761 -21.459 -1.567 22.873 hybrid contribution 1.127 1.364 0.241 1.786 sum -6.633 -20.095 -1.326 21.203 Atomic orbital electron populations 1.69998 1.07243 1.27997 1.32187 1.25743 0.94664 1.00625 0.92571 0.86329 0.79825 0.80438 0.79632 1.19081 1.20344 1.19070 1.19951 0.94257 0.89970 1.53324 0.91292 1.17194 0.88144 0.81728 0.79357 1.90780 1.12780 1.84746 1.51108 1.44721 1.09926 1.04338 1.72296 1.18987 0.88687 0.86799 0.89738 1.21400 1.00467 0.91800 1.11699 1.20701 0.91377 0.97778 0.95334 1.22490 0.97484 0.97234 1.16044 1.85159 0.98244 1.09562 1.93561 1.22579 0.93963 0.98465 1.07372 1.19104 0.97948 0.96832 0.92435 1.21091 0.96693 0.96638 0.96487 1.21247 0.97415 0.95722 0.99014 1.21159 0.99673 0.99868 0.91757 1.21056 0.97327 0.95754 0.98937 1.20882 0.99686 0.97614 0.86785 1.98400 1.88926 1.89234 1.26135 1.22811 0.99574 0.86177 0.94353 1.68023 1.06121 1.27958 1.14888 0.91557 0.76767 0.85015 0.85203 0.87963 0.87833 0.84617 0.85134 0.85033 0.84773 0.83795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -21.81 11.73 55.56 0.65 -21.16 16 2 C 0.09 2.35 5.50 -17.35 -0.10 2.25 16 3 Si 0.91 19.43 29.56 -169.99 -5.02 14.40 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.54 -14.76 9.30 -37.61 -0.35 -15.11 16 8 H 0.07 1.68 7.85 -52.49 -0.41 1.27 16 9 C 0.53 14.98 7.52 -15.00 -0.11 14.87 16 10 O -0.52 -16.67 13.12 5.09 0.07 -16.61 16 11 N -0.67 -15.31 5.36 -14.05 -0.08 -15.39 16 12 C 0.39 8.56 7.42 -154.94 -1.15 7.41 16 13 C -0.23 -3.83 9.93 -39.21 -0.39 -4.22 16 14 C -0.02 -0.33 9.94 -39.09 -0.39 -0.72 16 15 C -0.22 -3.54 6.15 -38.69 -0.24 -3.78 16 16 S -0.11 -1.43 21.93 -107.50 -2.36 -3.79 16 17 C -0.08 -0.91 4.08 36.00 0.15 -0.76 16 18 C -0.06 -0.64 5.14 -104.59 -0.54 -1.18 16 19 C -0.09 -0.78 9.70 -39.59 -0.38 -1.17 16 20 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 21 C -0.11 -0.73 10.05 -39.59 -0.40 -1.13 16 22 C -0.11 -0.93 9.83 -39.55 -0.39 -1.32 16 23 C -0.02 -0.22 6.31 -39.50 -0.25 -0.47 16 24 Cl -0.06 -0.63 27.30 -51.86 -1.42 -2.05 16 25 C 0.14 2.64 10.54 -17.24 -0.18 2.45 16 26 N -0.45 -10.80 7.85 -12.14 -0.10 -10.89 16 27 H 0.27 7.22 8.29 -40.82 -0.34 6.88 16 28 H 0.40 7.44 8.65 -40.82 -0.35 7.09 16 29 H 0.13 1.78 8.06 -52.48 -0.42 1.36 16 30 H 0.13 1.64 8.06 -52.48 -0.42 1.21 16 31 H 0.10 1.14 7.69 -51.93 -0.40 0.74 16 32 H 0.10 1.30 6.53 -51.92 -0.34 0.96 16 33 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 35 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 36 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.14 2.48 5.91 -52.49 -0.31 2.17 16 LS Contribution 352.87 15.07 5.32 5.32 Total: -1.00 -35.19 352.87 -11.53 -46.73 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -3.48 Total: 7.53 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -5.11 Total: -4.10 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 0.48 Total: -47.43 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: 0.07 Total: -16.61 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.40 kcal Atomic # 16 Polarization: -1.43 SS G_CDS: -2.36 Total: -3.79 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.42 Total: -2.05 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.19 -11.53 -46.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358409334.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.729 kcal (2) G-P(sol) polarization free energy of solvation -35.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds