Wall clock time and date at job start Tue Mar 31 2020 05:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30629 * 1 3 3 Si 1.86793 * 119.99784 * 2 1 4 4 H 1.48505 * 109.47191 * 239.99981 * 3 2 1 5 5 H 1.48499 * 109.47461 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47030 * 120.00362 * 3 2 1 7 7 C 1.40143 * 120.00307 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00035 * 180.02562 * 7 2 1 9 9 C 1.41529 * 119.99850 * 359.97438 * 7 2 1 10 10 O 1.21809 * 120.00167 * 0.02562 * 9 7 2 11 11 N 1.34780 * 120.00071 * 180.02562 * 9 7 2 12 12 C 1.38876 * 119.99898 * 185.09414 * 11 9 7 13 13 C 1.39394 * 119.60791 * 174.91371 * 12 11 9 14 14 C 1.38082 * 119.20045 * 180.02562 * 13 12 11 15 15 C 1.39694 * 118.43091 * 0.02562 * 14 13 12 16 16 S 1.76195 * 120.42638 * 179.97438 * 15 14 13 17 17 C 1.81406 * 103.00043 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47198 * 180.02562 * 17 16 15 19 19 C 1.38234 * 120.00990 * 270.00184 * 18 17 16 20 20 C 1.38217 * 120.01488 * 179.97438 * 19 18 17 21 21 C 1.38263 * 120.02839 * 359.97438 * 20 19 18 22 22 C 1.38190 * 120.00954 * 0.02562 * 21 20 19 23 23 C 1.38334 * 120.00490 * 90.00221 * 18 17 16 24 24 Cl 1.73601 * 120.01554 * 359.97438 * 23 18 17 25 25 C 1.39181 * 119.14641 * 0.25028 * 15 14 13 26 26 N 1.31738 * 120.72125 * 359.47598 * 25 15 14 27 27 H 0.96991 * 120.00423 * 0.02562 * 1 2 3 28 28 H 0.97001 * 119.99736 * 5.08970 * 11 9 7 29 29 H 1.08004 * 120.39989 * 0.03982 * 13 12 11 30 30 H 1.08008 * 120.78415 * 179.97438 * 14 13 12 31 31 H 1.08998 * 109.46862 * 60.00072 * 17 16 15 32 32 H 1.09003 * 109.46616 * 300.00358 * 17 16 15 33 33 H 1.08001 * 119.98951 * 359.97438 * 19 18 17 34 34 H 1.08001 * 119.98470 * 180.26823 * 20 19 18 35 35 H 1.07999 * 119.99390 * 180.02562 * 21 20 19 36 36 H 1.08000 * 120.00540 * 180.02562 * 22 21 20 37 37 H 1.08001 * 119.63771 * 179.74861 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 3.0940 1.6964 -1.2125 5 1 1.2752 2.7464 -0.0006 6 1 3.0940 1.6964 1.2125 7 6 2.0071 -1.2136 -0.0005 8 1 3.0870 -1.2136 -0.0001 9 6 1.2995 -2.4393 -0.0005 10 8 0.0814 -2.4394 -0.0005 11 7 1.9734 -3.6065 -0.0005 12 6 1.2831 -4.8069 -0.1073 13 6 1.9924 -6.0021 -0.2137 14 6 1.2976 -7.1906 -0.3200 15 6 -0.0987 -7.1473 -0.3172 16 16 -1.0378 -8.6321 -0.4507 17 6 -2.7509 -8.0377 -0.3980 18 6 -3.6926 -9.2095 -0.5028 19 6 -4.1244 -9.6406 -1.7432 20 6 -4.9878 -10.7157 -1.8395 21 6 -5.4197 -11.3608 -0.6954 22 6 -4.9888 -10.9307 0.5451 23 6 -4.1253 -9.8538 0.6423 24 17 -3.5830 -9.3134 2.2003 25 6 -0.7384 -5.9156 -0.2134 26 7 -0.0421 -4.8023 -0.1084 27 1 -0.4850 0.8399 -0.0004 28 1 2.9405 -3.6081 0.0740 29 1 3.0725 -5.9987 -0.2128 30 1 1.8213 -8.1315 -0.4042 31 1 -2.9245 -7.3559 -1.2305 32 1 -2.9251 -7.5148 0.5424 33 1 -3.7870 -9.1374 -2.6372 34 1 -5.3214 -11.0549 -2.8090 35 1 -6.0940 -12.2010 -0.7713 36 1 -5.3259 -11.4349 1.4387 37 1 -1.8176 -5.8725 -0.2145 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358409334.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:46 Heat of formation + Delta-G solvation = 8.021365 kcal Electronic energy + Delta-G solvation = -23571.933374 eV Core-core repulsion = 19851.678516 eV Total energy + Delta-G solvation = -3720.254857 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 348.044 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.30570 -40.37791 -39.14594 -37.43570 -35.53184 -34.48595 -34.07177 -33.31120 -31.70506 -31.23021 -28.77437 -28.10491 -24.86745 -24.35941 -23.70047 -22.61430 -21.88015 -19.64035 -18.66879 -18.26559 -17.80992 -17.67975 -16.82736 -16.78750 -16.43577 -16.16076 -15.78320 -15.66355 -15.36995 -14.82518 -14.58907 -14.45374 -14.36736 -14.21755 -13.96650 -13.90046 -13.24386 -13.05716 -12.79297 -12.68092 -12.62895 -12.47174 -12.31777 -12.07203 -11.85427 -11.77514 -11.65644 -10.96569 -10.85431 -10.46172 -9.89198 -9.67139 -9.65880 -9.46605 -8.34619 -8.10763 -7.00815 -0.16588 0.10345 0.22925 0.43074 0.82027 1.14670 1.38407 1.39282 1.42236 1.54672 2.19632 2.37730 2.69492 2.69753 2.89806 3.40877 3.61112 3.62382 3.72915 3.88264 3.98997 4.10685 4.18751 4.22524 4.34273 4.40374 4.47315 4.68608 4.72101 4.86384 4.93335 5.01161 5.21436 5.23351 5.35063 5.44915 5.46344 5.82653 5.83299 6.03109 6.23959 6.73518 6.97436 7.57899 8.43410 8.62028 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.020228 B = 0.002155 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.880169 B =12991.237515 C =13402.709624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.028 3.972 3 Si 1.004 2.996 4 H -0.252 1.252 5 H -0.274 1.274 6 H -0.252 1.252 7 C -0.566 4.566 8 H 0.094 0.906 9 C 0.516 3.484 10 O -0.573 6.573 11 N -0.671 5.671 12 C 0.353 3.647 13 C -0.202 4.202 14 C -0.021 4.021 15 C -0.203 4.203 16 S -0.079 6.079 17 C -0.075 4.075 18 C -0.081 4.081 19 C -0.097 4.097 20 C -0.112 4.112 21 C -0.097 4.097 22 C -0.117 4.117 23 C -0.038 4.038 24 Cl -0.075 7.075 25 C 0.111 3.889 26 N -0.514 5.514 27 H 0.278 0.722 28 H 0.416 0.584 29 H 0.171 0.829 30 H 0.172 0.828 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.145 0.855 34 H 0.160 0.840 35 H 0.164 0.836 36 H 0.149 0.851 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.688 -23.887 -2.626 24.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.189 4.189 3 Si 0.822 3.178 4 H -0.176 1.176 5 H -0.199 1.199 6 H -0.176 1.176 7 C -0.601 4.601 8 H 0.112 0.888 9 C 0.323 3.677 10 O -0.455 6.455 11 N -0.316 5.316 12 C 0.118 3.882 13 C -0.228 4.228 14 C -0.052 4.052 15 C -0.320 4.320 16 S 0.164 5.836 17 C -0.222 4.222 18 C -0.084 4.084 19 C -0.117 4.117 20 C -0.130 4.130 21 C -0.116 4.116 22 C -0.136 4.136 23 C -0.066 4.066 24 Cl -0.046 7.046 25 C -0.054 4.054 26 N -0.230 5.230 27 H 0.088 0.912 28 H 0.253 0.747 29 H 0.189 0.811 30 H 0.189 0.811 31 H 0.122 0.878 32 H 0.109 0.891 33 H 0.163 0.837 34 H 0.178 0.822 35 H 0.182 0.818 36 H 0.167 0.833 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.703 -23.911 -2.507 24.959 hybrid contribution 0.648 1.767 0.485 1.943 sum -6.055 -22.144 -2.023 23.046 Atomic orbital electron populations 1.70183 1.09799 1.29482 1.33737 1.27074 0.95504 1.05294 0.91065 0.84979 0.78166 0.74121 0.80494 1.17569 1.19901 1.17571 1.20527 0.95608 0.90447 1.53503 0.88837 1.17576 0.87799 0.83599 0.78709 1.90727 1.14986 1.86266 1.53502 1.44086 1.10544 1.03815 1.73177 1.19274 0.88658 0.87686 0.92595 1.21724 1.02244 0.90156 1.08631 1.21229 0.90997 0.98937 0.94033 1.22835 0.98733 0.97776 1.12615 1.85039 0.98841 1.07007 1.92737 1.22595 0.93429 0.99348 1.06834 1.19087 0.98806 0.97016 0.93460 1.21313 0.97052 0.97299 0.96005 1.21628 0.96164 0.94618 1.00558 1.21584 0.99027 1.00112 0.90860 1.21342 0.96734 0.95099 1.00424 1.21072 1.00945 0.98728 0.85890 1.98390 1.89263 1.89569 1.27424 1.22890 0.99802 0.86519 0.96141 1.67754 1.08049 1.30800 1.16354 0.91179 0.74743 0.81111 0.81096 0.87764 0.89104 0.83748 0.82245 0.81807 0.83311 0.83512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -49.12 11.73 21.85 0.26 -48.86 16 2 C 0.03 1.57 5.50 85.33 0.47 2.03 16 3 Si 1.00 40.09 29.56 68.60 2.03 42.11 16 4 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 5 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 6 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 7 C -0.57 -31.71 9.30 23.54 0.22 -31.49 16 8 H 0.09 4.56 7.85 -2.91 -0.02 4.54 16 9 C 0.52 30.63 7.52 85.05 0.64 31.27 16 10 O -0.57 -39.39 13.12 -4.70 -0.06 -39.46 16 11 N -0.67 -31.63 5.36 -316.54 -1.70 -33.33 16 12 C 0.35 15.73 7.42 133.13 0.99 16.71 16 13 C -0.20 -6.50 9.93 22.51 0.22 -6.28 16 14 C -0.02 -0.62 9.94 22.58 0.22 -0.40 16 15 C -0.20 -6.56 6.15 22.85 0.14 -6.42 16 16 S -0.08 -2.03 21.93 -56.49 -1.24 -3.27 16 17 C -0.07 -1.79 4.08 71.24 0.29 -1.50 16 18 C -0.08 -1.66 5.14 -19.84 -0.10 -1.76 16 19 C -0.10 -1.53 9.70 22.26 0.22 -1.32 16 20 C -0.11 -1.25 10.05 22.27 0.22 -1.03 16 21 C -0.10 -1.02 10.05 22.26 0.22 -0.80 16 22 C -0.12 -1.72 9.83 22.29 0.22 -1.50 16 23 C -0.04 -0.76 6.31 22.32 0.14 -0.62 16 24 Cl -0.08 -1.72 27.30 -2.72 -0.07 -1.80 16 25 C 0.11 4.48 10.54 84.93 0.90 5.37 16 26 N -0.51 -25.78 7.85 -192.32 -1.51 -27.29 16 27 H 0.28 15.36 8.29 -92.72 -0.77 14.60 16 28 H 0.42 15.66 8.65 -92.71 -0.80 14.86 16 29 H 0.17 4.04 8.06 -2.91 -0.02 4.02 16 30 H 0.17 3.56 8.06 -2.91 -0.02 3.54 16 31 H 0.10 2.41 7.69 -2.39 -0.02 2.39 16 32 H 0.09 2.41 6.53 -2.39 -0.02 2.40 16 33 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 34 H 0.16 0.86 8.06 -2.91 -0.02 0.84 16 35 H 0.16 0.67 8.06 -2.91 -0.02 0.65 16 36 H 0.15 1.67 8.06 -2.91 -0.02 1.64 16 37 H 0.15 5.49 5.91 -2.91 -0.02 5.47 16 Total: -1.00 -83.12 352.87 3.05 -80.07 By element: Atomic # 1 Polarization: 29.22 SS G_CDS: 0.34 Total: 29.55 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 5.01 Total: 2.27 kcal Atomic # 7 Polarization: -106.53 SS G_CDS: -2.95 Total: -109.48 kcal Atomic # 8 Polarization: -39.39 SS G_CDS: -0.06 Total: -39.46 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.11 kcal Atomic # 16 Polarization: -2.03 SS G_CDS: -1.24 Total: -3.27 kcal Atomic # 17 Polarization: -1.72 SS G_CDS: -0.07 Total: -1.80 kcal Total: -83.12 3.05 -80.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358409334.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.090 kcal (2) G-P(sol) polarization free energy of solvation -83.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds