Wall clock time and date at job start Tue Mar 31 2020 05:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.31034 * 125.25224 * 2 1 4 4 N 1.37288 * 115.37741 * 179.97438 * 3 2 1 5 5 C 1.35129 * 113.87841 * 0.02562 * 4 3 2 6 6 N 1.33675 * 121.39390 * 179.97438 * 5 4 3 7 7 C 1.31621 * 122.37674 * 359.75439 * 6 5 4 8 8 C 1.39973 * 119.28817 * 0.49820 * 7 6 5 9 9 C 1.46748 * 120.85828 * 179.77780 * 8 7 6 10 10 O 1.21693 * 120.00383 * 258.54113 * 9 8 7 11 11 N 1.34782 * 119.99783 * 78.53890 * 9 8 7 12 12 C 1.46966 * 120.59220 * 184.98511 * 11 9 8 13 13 C 1.53370 * 108.63193 * 235.24834 * 12 11 9 14 14 N 1.46963 * 108.63957 * 310.57512 * 13 12 11 15 15 C 1.36934 * 120.59730 * 235.21066 * 14 13 12 16 16 H 1.07999 * 120.00254 * 151.16003 * 15 14 13 17 17 C 1.38812 * 119.99559 * 331.43214 * 15 14 13 18 18 N 1.31622 * 119.99754 * 158.53624 * 17 15 14 19 19 Si 1.86794 * 120.00229 * 338.53179 * 17 15 14 20 20 H 1.48509 * 109.46831 * 94.25863 * 19 17 15 21 21 H 1.48496 * 109.47605 * 214.25705 * 19 17 15 22 22 H 1.48497 * 109.47570 * 334.26070 * 19 17 15 23 23 C 1.46966 * 118.80814 * 55.48089 * 14 13 12 24 24 C 1.46969 * 120.59425 * 5.00938 * 11 9 8 25 25 C 1.36388 * 126.85623 * 179.97438 * 4 3 2 26 26 O 1.21871 * 120.30412 * 359.97438 * 25 4 3 27 27 S 1.71459 * 109.94179 * 359.97438 * 5 4 3 28 28 H 1.09005 * 109.47380 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46597 * 299.99612 * 1 2 3 30 30 H 1.08997 * 109.47517 * 59.99688 * 1 2 3 31 31 H 1.07998 * 122.31331 * 359.96138 * 3 2 1 32 32 H 1.08003 * 120.35333 * 180.27712 * 7 6 5 33 33 H 1.09002 * 109.60690 * 115.50567 * 12 11 9 34 34 H 1.08997 * 109.60783 * 354.99644 * 12 11 9 35 35 H 1.09009 * 109.60696 * 190.83427 * 13 12 11 36 36 H 1.08998 * 109.61024 * 70.32847 * 13 12 11 37 37 H 0.97002 * 119.99777 * 179.97438 * 18 17 15 38 38 H 1.09001 * 109.60983 * 64.26499 * 23 14 13 39 39 H 1.08995 * 109.61084 * 184.78123 * 23 14 13 40 40 H 1.09003 * 109.60709 * 244.49631 * 24 11 9 41 41 H 1.09000 * 109.60758 * 5.00858 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2633 1.0700 0.0000 4 7 3.6158 0.8346 0.0006 5 6 3.9428 -0.4765 0.0005 6 7 5.2185 -0.8761 0.0004 7 6 6.2233 -0.0259 -0.0043 8 6 5.9576 1.3483 0.0012 9 6 7.0515 2.3265 0.0011 10 8 7.3688 2.8847 1.0348 11 7 7.7049 2.6066 -1.1440 12 6 8.8715 3.5005 -1.1400 13 6 8.6207 4.6379 -2.1378 14 7 8.1791 4.0554 -3.4128 15 6 8.8424 4.3407 -4.5763 16 1 8.8545 3.6209 -5.3814 17 6 9.5040 5.5527 -4.7187 18 7 10.4661 5.6766 -5.6083 19 14 9.0288 7.0077 -3.6480 20 1 9.9112 7.0529 -2.4543 21 1 9.1815 8.2643 -4.4242 22 1 7.6161 6.8625 -3.2140 23 6 7.0091 3.1661 -3.4175 24 6 7.2632 2.0241 -2.4190 25 6 4.6089 1.7694 0.0002 26 8 4.3355 2.9571 -0.0012 27 16 2.5204 -1.4340 0.0004 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8511 2.0683 -0.0006 32 1 7.2419 -0.3849 -0.0086 33 1 9.7602 2.9432 -1.4363 34 1 9.0120 3.9141 -0.1414 35 1 9.5423 5.1992 -2.2919 36 1 7.8465 5.3002 -1.7505 37 1 10.9282 6.5236 -5.7080 38 1 6.1227 3.7260 -3.1192 39 1 6.8660 2.7550 -4.4168 40 1 8.0375 1.3618 -2.8062 41 1 6.3416 1.4628 -2.2649 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408095560.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:32 Heat of formation + Delta-G solvation = 53.143681 kcal Electronic energy + Delta-G solvation = -28512.162897 eV Core-core repulsion = 24521.281370 eV Total energy + Delta-G solvation = -3990.881526 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -42.81095 -39.79985 -38.12174 -37.67274 -36.87531 -34.00130 -33.59733 -31.73316 -31.34020 -30.49784 -28.38884 -27.54455 -26.52998 -24.03269 -23.64157 -23.39718 -22.06494 -20.84611 -19.55383 -19.23195 -18.98023 -17.81825 -17.29395 -16.94288 -16.33344 -15.94232 -15.58085 -15.11643 -14.79544 -14.64824 -14.40111 -14.31518 -14.13567 -13.88261 -13.77589 -13.67413 -13.45846 -13.09376 -12.75035 -12.61031 -12.35968 -12.18312 -11.94264 -11.92268 -11.08460 -10.95496 -10.87472 -10.52465 -10.48399 -10.41949 -10.24177 -10.07803 -9.87230 -9.62525 -9.48986 -8.82903 -8.29211 -8.05308 -6.96597 -5.99436 -3.36596 -0.42751 0.06420 0.77267 0.78460 1.47471 1.64495 2.80028 3.00244 3.32655 3.36701 3.49733 3.55707 3.67418 3.80081 4.18194 4.33599 4.51349 4.62582 4.71767 4.85590 4.87532 4.88386 5.12259 5.26777 5.27527 5.32503 5.54084 5.58565 5.66892 5.76100 5.84057 5.90553 6.04357 6.17657 6.23318 6.42873 6.54930 6.73151 6.91654 7.03933 7.33720 7.71810 7.90371 8.28505 8.40523 8.87520 9.66983 10.04721 11.16049 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.019523 B = 0.002916 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.878016 B = 9601.076654 C = 9852.378069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.211 4.211 3 C 0.061 3.939 4 N -0.451 5.451 5 C 0.273 3.727 6 N -0.516 5.516 7 C 0.227 3.773 8 C -0.309 4.309 9 C 0.590 3.410 10 O -0.538 6.538 11 N -0.588 5.588 12 C 0.097 3.903 13 C 0.115 3.885 14 N -0.604 5.604 15 C -0.264 4.264 16 H 0.087 0.913 17 C 0.028 3.972 18 N -0.904 5.904 19 Si 0.877 3.123 20 H -0.286 1.286 21 H -0.301 1.301 22 H -0.270 1.270 23 C 0.135 3.865 24 C 0.094 3.906 25 C 0.543 3.457 26 O -0.497 6.497 27 S 0.270 5.730 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.197 0.803 32 H 0.185 0.815 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.031 0.969 37 H 0.264 0.736 38 H 0.027 0.973 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.766 -18.697 11.819 30.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.330 4.330 3 C -0.065 4.065 4 N -0.160 5.160 5 C -0.090 4.090 6 N -0.244 5.244 7 C 0.075 3.925 8 C -0.325 4.325 9 C 0.375 3.625 10 O -0.416 6.416 11 N -0.320 5.320 12 C -0.026 4.026 13 C -0.011 4.011 14 N -0.328 5.328 15 C -0.392 4.392 16 H 0.104 0.896 17 C -0.172 4.172 18 N -0.546 5.546 19 Si 0.707 3.293 20 H -0.213 1.213 21 H -0.229 1.229 22 H -0.195 1.195 23 C 0.008 3.992 24 C -0.030 4.030 25 C 0.344 3.656 26 O -0.371 6.371 27 S 0.523 5.477 28 H 0.098 0.902 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.214 0.786 32 H 0.202 0.798 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.049 0.951 37 H 0.073 0.927 38 H 0.045 0.955 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -20.627 -19.593 12.237 30.969 hybrid contribution 0.072 3.210 0.443 3.241 sum -20.555 -16.382 12.680 29.183 Atomic orbital electron populations 1.20336 0.84539 1.04143 1.04341 1.24117 1.02341 0.94780 1.11782 1.20955 0.80650 1.02872 1.02071 1.45285 1.08176 1.08370 1.54160 1.25785 1.01077 0.85692 0.96490 1.68189 0.94242 1.35418 1.26595 1.23067 0.98077 0.87293 0.84046 1.21265 0.92752 0.96205 1.22286 1.17084 0.80812 0.80956 0.83639 1.90778 1.66909 1.51665 1.32199 1.47955 1.30548 1.46805 1.06736 1.22290 0.86674 0.92501 1.01183 1.21712 0.99343 0.93890 0.86181 1.44301 1.30245 1.54897 1.03358 1.18892 1.26875 0.99900 0.93560 0.89550 1.25291 0.97545 0.97406 0.96919 1.69842 1.21917 1.25710 1.37160 0.87010 0.79654 0.83261 0.79396 1.21325 1.22869 1.19533 1.21377 0.89863 0.90756 0.97214 1.22404 0.99147 0.97229 0.84252 1.17050 0.84204 0.85233 0.79160 1.90997 1.82501 1.14331 1.49304 1.84298 0.85991 1.02578 1.74832 0.90163 0.89421 0.89327 0.78613 0.79841 0.90783 0.89536 0.89808 0.95062 0.92658 0.95464 0.90564 0.90767 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.13 10.37 36.00 0.37 0.24 16 2 C -0.21 -1.09 6.43 -36.04 -0.23 -1.32 16 3 C 0.06 0.50 10.38 -16.83 -0.17 0.33 16 4 N -0.45 -5.30 2.82 -67.14 -0.19 -5.49 16 5 C 0.27 2.78 8.07 -87.58 -0.71 2.07 16 6 N -0.52 -5.82 10.39 -13.57 -0.14 -5.96 16 7 C 0.23 2.76 10.84 -16.99 -0.18 2.58 16 8 C -0.31 -4.88 3.71 -104.65 -0.39 -5.27 16 9 C 0.59 11.26 6.71 -12.82 -0.09 11.18 16 10 O -0.54 -11.99 16.52 5.19 0.09 -11.91 16 11 N -0.59 -11.06 2.95 -173.72 -0.51 -11.58 16 12 C 0.10 1.93 6.60 -3.60 -0.02 1.91 16 13 C 0.11 2.67 4.38 -3.60 -0.02 2.65 16 14 N -0.60 -14.66 2.71 -171.76 -0.47 -15.13 16 15 C -0.26 -7.35 10.01 -15.06 -0.15 -7.50 16 16 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 17 C 0.03 0.81 5.20 -17.43 -0.09 0.72 16 18 N -0.90 -27.58 13.97 55.49 0.78 -26.81 16 19 Si 0.88 22.88 24.42 -169.99 -4.15 18.73 16 20 H -0.29 -7.20 6.68 56.52 0.38 -6.82 16 21 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 22 H -0.27 -7.15 6.71 56.52 0.38 -6.77 16 23 C 0.13 2.73 6.70 -3.36 -0.02 2.71 16 24 C 0.09 1.60 6.48 -3.36 -0.02 1.57 16 25 C 0.54 8.74 7.55 -14.37 -0.11 8.63 16 26 O -0.50 -9.79 16.93 5.04 0.09 -9.71 16 27 S 0.27 1.54 23.13 -107.50 -2.49 -0.95 16 28 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 29 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 30 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 31 H 0.20 1.42 8.00 -52.49 -0.42 1.00 16 32 H 0.18 1.75 8.06 -52.48 -0.42 1.32 16 33 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.09 1.70 6.99 -51.93 -0.36 1.34 16 35 H 0.08 2.05 4.60 -51.92 -0.24 1.81 16 36 H 0.03 0.76 7.21 -51.93 -0.37 0.39 16 37 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 1.45 7.93 -51.93 -0.41 1.04 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.07 0.98 6.20 -51.93 -0.32 0.66 16 LS Contribution 351.98 15.07 5.30 5.30 Total: -1.00 -38.07 351.98 -8.22 -46.29 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -4.69 Total: -3.29 kcal Atomic # 6 Polarization: 22.33 SS G_CDS: -1.83 Total: 20.50 kcal Atomic # 7 Polarization: -64.43 SS G_CDS: -0.53 Total: -64.97 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: 0.17 Total: -21.62 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -4.15 Total: 18.73 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.49 Total: -0.95 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -38.07 -8.22 -46.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408095560.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.437 kcal (2) G-P(sol) polarization free energy of solvation -38.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds