Wall clock time and date at job start Tue Mar 31 2020 05:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.31034 * 125.25224 * 2 1 4 4 N 1.37288 * 115.37741 * 179.97438 * 3 2 1 5 5 C 1.35129 * 113.87841 * 0.02562 * 4 3 2 6 6 N 1.33675 * 121.39390 * 179.97438 * 5 4 3 7 7 C 1.31621 * 122.37674 * 359.75439 * 6 5 4 8 8 C 1.39973 * 119.28817 * 0.49820 * 7 6 5 9 9 C 1.46748 * 120.85828 * 179.77780 * 8 7 6 10 10 O 1.21693 * 120.00383 * 258.54113 * 9 8 7 11 11 N 1.34782 * 119.99783 * 78.53890 * 9 8 7 12 12 C 1.46966 * 120.59220 * 184.98511 * 11 9 8 13 13 C 1.53370 * 108.63193 * 235.24834 * 12 11 9 14 14 N 1.46963 * 108.63957 * 310.57512 * 13 12 11 15 15 C 1.36934 * 120.59730 * 235.21066 * 14 13 12 16 16 H 1.07999 * 120.00254 * 151.16003 * 15 14 13 17 17 C 1.38812 * 119.99559 * 331.43214 * 15 14 13 18 18 N 1.31622 * 119.99754 * 158.53624 * 17 15 14 19 19 Si 1.86794 * 120.00229 * 338.53179 * 17 15 14 20 20 H 1.48509 * 109.46831 * 94.25863 * 19 17 15 21 21 H 1.48496 * 109.47605 * 214.25705 * 19 17 15 22 22 H 1.48497 * 109.47570 * 334.26070 * 19 17 15 23 23 C 1.46966 * 118.80814 * 55.48089 * 14 13 12 24 24 C 1.46969 * 120.59425 * 5.00938 * 11 9 8 25 25 C 1.36388 * 126.85623 * 179.97438 * 4 3 2 26 26 O 1.21871 * 120.30412 * 359.97438 * 25 4 3 27 27 S 1.71459 * 109.94179 * 359.97438 * 5 4 3 28 28 H 1.09005 * 109.47380 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46597 * 299.99612 * 1 2 3 30 30 H 1.08997 * 109.47517 * 59.99688 * 1 2 3 31 31 H 1.07998 * 122.31331 * 359.96138 * 3 2 1 32 32 H 1.08003 * 120.35333 * 180.27712 * 7 6 5 33 33 H 1.09002 * 109.60690 * 115.50567 * 12 11 9 34 34 H 1.08997 * 109.60783 * 354.99644 * 12 11 9 35 35 H 1.09009 * 109.60696 * 190.83427 * 13 12 11 36 36 H 1.08998 * 109.61024 * 70.32847 * 13 12 11 37 37 H 0.97002 * 119.99777 * 179.97438 * 18 17 15 38 38 H 1.09001 * 109.60983 * 64.26499 * 23 14 13 39 39 H 1.08995 * 109.61084 * 184.78123 * 23 14 13 40 40 H 1.09003 * 109.60709 * 244.49631 * 24 11 9 41 41 H 1.09000 * 109.60758 * 5.00858 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2633 1.0700 0.0000 4 7 3.6158 0.8346 0.0006 5 6 3.9428 -0.4765 0.0005 6 7 5.2185 -0.8761 0.0004 7 6 6.2233 -0.0259 -0.0043 8 6 5.9576 1.3483 0.0012 9 6 7.0515 2.3265 0.0011 10 8 7.3688 2.8847 1.0348 11 7 7.7049 2.6066 -1.1440 12 6 8.8715 3.5005 -1.1400 13 6 8.6207 4.6379 -2.1378 14 7 8.1791 4.0554 -3.4128 15 6 8.8424 4.3407 -4.5763 16 1 8.8545 3.6209 -5.3814 17 6 9.5040 5.5527 -4.7187 18 7 10.4661 5.6766 -5.6083 19 14 9.0288 7.0077 -3.6480 20 1 9.9112 7.0529 -2.4543 21 1 9.1815 8.2643 -4.4242 22 1 7.6161 6.8625 -3.2140 23 6 7.0091 3.1661 -3.4175 24 6 7.2632 2.0241 -2.4190 25 6 4.6089 1.7694 0.0002 26 8 4.3355 2.9571 -0.0012 27 16 2.5204 -1.4340 0.0004 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8511 2.0683 -0.0006 32 1 7.2419 -0.3849 -0.0086 33 1 9.7602 2.9432 -1.4363 34 1 9.0120 3.9141 -0.1414 35 1 9.5423 5.1992 -2.2919 36 1 7.8465 5.3002 -1.7505 37 1 10.9282 6.5236 -5.7080 38 1 6.1227 3.7260 -3.1192 39 1 6.8660 2.7550 -4.4168 40 1 8.0375 1.3618 -2.8062 41 1 6.3416 1.4628 -2.2649 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408095560.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:31 Heat of formation + Delta-G solvation = 25.637340 kcal Electronic energy + Delta-G solvation = -28513.355661 eV Core-core repulsion = 24521.281370 eV Total energy + Delta-G solvation = -3992.074291 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.71050 -41.19232 -39.29021 -38.73472 -38.31078 -35.75509 -34.24621 -33.57499 -32.82485 -31.92572 -29.20483 -28.79891 -27.71545 -25.44380 -24.97578 -24.89541 -23.25176 -22.19129 -20.62878 -20.29190 -19.96274 -19.18159 -18.47324 -18.17873 -17.82485 -17.26781 -17.00422 -16.72221 -16.12152 -16.00994 -15.53146 -15.49571 -15.29859 -15.12356 -14.87409 -14.69576 -14.38342 -14.34865 -14.20564 -14.01777 -13.69649 -13.47016 -13.27090 -12.92657 -12.59785 -12.41228 -12.37786 -12.13712 -12.02548 -11.89892 -11.68006 -11.56266 -11.13066 -11.04032 -10.88108 -10.59203 -9.98828 -8.96361 -8.89469 -8.23796 -5.56686 -1.27599 -0.60196 0.01857 0.15286 0.61770 0.75747 1.22988 1.34531 1.43647 1.49301 1.82207 2.17133 2.34026 2.85626 2.90656 2.98474 3.20430 3.46684 3.63430 3.84358 3.94698 3.98810 4.02417 4.16096 4.22798 4.30167 4.42256 4.46336 4.53230 4.62541 4.71348 4.76749 4.78378 4.82887 4.83809 5.01638 5.04070 5.21118 5.39128 5.78603 6.06534 6.14616 6.29007 6.31533 6.78894 6.98028 7.50894 7.94056 8.95384 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.019523 B = 0.002916 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.878016 B = 9601.076654 C = 9852.378069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.175 4.175 3 C 0.016 3.984 4 N -0.448 5.448 5 C 0.247 3.753 6 N -0.525 5.525 7 C 0.265 3.735 8 C -0.364 4.364 9 C 0.595 3.405 10 O -0.581 6.581 11 N -0.593 5.593 12 C 0.106 3.894 13 C 0.115 3.885 14 N -0.616 5.616 15 C -0.248 4.248 16 H 0.069 0.931 17 C -0.019 4.019 18 N -0.944 5.944 19 Si 0.928 3.072 20 H -0.274 1.274 21 H -0.303 1.303 22 H -0.280 1.280 23 C 0.131 3.869 24 C 0.108 3.892 25 C 0.536 3.464 26 O -0.559 6.559 27 S 0.372 5.628 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.197 0.803 32 H 0.210 0.790 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.015 0.985 37 H 0.264 0.736 38 H 0.014 0.986 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.806 -22.486 12.704 35.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.295 4.295 3 C -0.109 4.109 4 N -0.154 5.154 5 C -0.113 4.113 6 N -0.253 5.253 7 C 0.107 3.893 8 C -0.381 4.381 9 C 0.383 3.617 10 O -0.462 6.462 11 N -0.324 5.324 12 C -0.018 4.018 13 C -0.011 4.011 14 N -0.340 5.340 15 C -0.377 4.377 16 H 0.087 0.913 17 C -0.215 4.215 18 N -0.589 5.589 19 Si 0.758 3.242 20 H -0.201 1.201 21 H -0.231 1.231 22 H -0.206 1.206 23 C 0.005 3.995 24 C -0.016 4.016 25 C 0.340 3.660 26 O -0.438 6.438 27 S 0.627 5.373 28 H 0.122 0.878 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.214 0.786 32 H 0.226 0.774 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.033 0.967 37 H 0.073 0.927 38 H 0.032 0.968 39 H 0.107 0.893 40 H 0.111 0.889 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -23.787 -23.467 13.137 35.904 hybrid contribution 0.630 4.041 0.184 4.094 sum -23.158 -19.426 13.321 33.032 Atomic orbital electron populations 1.20641 0.81452 1.06117 1.05648 1.24756 1.03985 0.93961 1.06772 1.21214 0.79481 1.04320 1.05865 1.45133 1.08919 1.08366 1.52980 1.26796 1.02548 0.86013 0.95915 1.68314 0.94520 1.34713 1.27729 1.23388 0.99499 0.85753 0.80627 1.20807 0.91615 0.96733 1.28902 1.17527 0.80788 0.80689 0.82720 1.90726 1.68216 1.53559 1.33676 1.48035 1.30222 1.46593 1.07551 1.22053 0.87896 0.91875 0.99948 1.21630 0.97999 0.94901 0.86594 1.44429 1.31442 1.55464 1.02674 1.18894 1.25687 0.99077 0.94038 0.91333 1.25746 0.98022 0.99361 0.98397 1.69922 1.23438 1.26209 1.39373 0.86178 0.78804 0.80759 0.78475 1.20070 1.23135 1.20585 1.21553 0.87839 0.91006 0.99102 1.22326 1.00977 0.95867 0.82412 1.17068 0.85096 0.84969 0.78859 1.90942 1.83498 1.16523 1.52879 1.84177 0.82404 1.00441 1.70318 0.87781 0.87980 0.88010 0.78618 0.77379 0.89370 0.89622 0.91185 0.96741 0.92688 0.96763 0.89343 0.88931 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.11 10.37 71.24 0.74 0.85 16 2 C -0.18 -1.10 6.43 25.61 0.16 -0.94 16 3 C 0.02 0.24 10.38 83.77 0.87 1.11 16 4 N -0.45 -10.06 2.82 -483.56 -1.36 -11.43 16 5 C 0.25 4.36 8.07 179.29 1.45 5.81 16 6 N -0.52 -10.44 10.39 -196.86 -2.04 -12.48 16 7 C 0.26 5.99 10.84 85.15 0.92 6.91 16 8 C -0.36 -11.54 3.71 -19.88 -0.07 -11.62 16 9 C 0.60 23.20 6.71 86.47 0.58 23.78 16 10 O -0.58 -26.93 16.52 -4.33 -0.07 -27.00 16 11 N -0.59 -22.34 2.95 -821.74 -2.42 -24.76 16 12 C 0.11 4.27 6.60 86.41 0.57 4.84 16 13 C 0.11 5.43 4.38 86.42 0.38 5.81 16 14 N -0.62 -30.18 2.71 -697.34 -1.89 -32.07 16 15 C -0.25 -13.98 10.01 84.03 0.84 -13.14 16 16 H 0.07 4.07 8.06 -2.91 -0.02 4.05 16 17 C -0.02 -1.13 5.20 84.86 0.44 -0.69 16 18 N -0.94 -58.81 13.97 21.65 0.30 -58.51 16 19 Si 0.93 48.60 24.42 68.60 1.68 50.27 16 20 H -0.27 -13.68 6.68 99.48 0.66 -13.01 16 21 H -0.30 -15.85 7.11 99.48 0.71 -15.14 16 22 H -0.28 -14.97 6.71 99.48 0.67 -14.30 16 23 C 0.13 5.28 6.70 86.57 0.58 5.86 16 24 C 0.11 3.54 6.48 86.56 0.56 4.10 16 25 C 0.54 17.68 7.55 84.73 0.64 18.32 16 26 O -0.56 -23.34 16.93 -4.90 -0.08 -23.42 16 27 S 0.37 2.46 23.13 -56.49 -1.31 1.15 16 28 H 0.10 -0.55 8.14 -2.38 -0.02 -0.57 16 29 H 0.10 -0.27 8.14 -2.39 -0.02 -0.29 16 30 H 0.10 -0.25 8.14 -2.39 -0.02 -0.26 16 31 H 0.20 2.80 8.00 -2.91 -0.02 2.78 16 32 H 0.21 3.44 8.06 -2.91 -0.02 3.42 16 33 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 34 H 0.09 3.46 6.99 -2.39 -0.02 3.44 16 35 H 0.07 3.48 4.60 -2.38 -0.01 3.47 16 36 H 0.01 0.74 7.21 -2.39 -0.02 0.72 16 37 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 38 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.09 3.32 7.93 -2.39 -0.02 3.30 16 40 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 41 H 0.09 2.58 6.20 -2.39 -0.01 2.57 16 Total: -1.00 -88.06 351.98 2.46 -85.60 By element: Atomic # 1 Polarization: 0.63 SS G_CDS: 1.00 Total: 1.63 kcal Atomic # 6 Polarization: 42.35 SS G_CDS: 8.66 Total: 51.01 kcal Atomic # 7 Polarization: -131.83 SS G_CDS: -7.42 Total: -139.25 kcal Atomic # 8 Polarization: -50.27 SS G_CDS: -0.15 Total: -50.43 kcal Atomic # 14 Polarization: 48.60 SS G_CDS: 1.68 Total: 50.27 kcal Atomic # 16 Polarization: 2.46 SS G_CDS: -1.31 Total: 1.15 kcal Total: -88.06 2.46 -85.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408095560.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.242 kcal (2) G-P(sol) polarization free energy of solvation -88.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds