Wall clock time and date at job start Tue Mar 31 2020 05:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47272 * 2 1 4 4 C 1.53004 * 109.46977 * 240.00565 * 2 1 3 5 5 O 1.45197 * 109.47438 * 120.00780 * 2 1 3 6 6 C 1.34634 * 117.00193 * 59.99534 * 5 2 1 7 7 O 1.21508 * 120.00260 * 0.02562 * 6 5 2 8 8 N 1.34776 * 120.00112 * 179.97438 * 6 5 2 9 9 C 1.46501 * 120.00073 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.46866 * 180.02562 * 9 8 6 11 11 C 1.50708 * 109.47055 * 179.97438 * 10 9 8 12 12 O 1.21285 * 119.99612 * 359.97438 * 11 10 9 13 13 N 1.34768 * 120.00153 * 179.97438 * 11 10 9 14 14 C 1.46501 * 119.99964 * 180.02562 * 13 11 10 15 15 H 1.09004 * 109.47437 * 34.99748 * 14 13 11 16 16 C 1.50704 * 109.46945 * 274.99742 * 14 13 11 17 17 H 1.08001 * 119.99888 * 125.37184 * 16 14 13 18 18 C 1.37878 * 119.99823 * 305.37488 * 16 14 13 19 19 N 1.31514 * 120.00188 * 10.02182 * 18 16 14 20 20 Si 1.86806 * 119.99588 * 190.02949 * 18 16 14 21 21 H 1.48497 * 109.47118 * 89.99788 * 20 18 16 22 22 H 1.48496 * 109.46678 * 209.99779 * 20 18 16 23 23 H 1.48504 * 109.46820 * 329.99425 * 20 18 16 24 24 C 1.50695 * 109.47151 * 154.99955 * 14 13 11 25 25 C 1.38237 * 119.99874 * 213.53234 * 24 14 13 26 26 C 1.38237 * 119.99722 * 179.97438 * 25 24 14 27 27 C 1.38234 * 120.00339 * 359.96144 * 26 25 24 28 28 C 1.38235 * 120.00034 * 359.97438 * 27 26 25 29 29 C 1.38234 * 120.00308 * 33.51070 * 24 14 13 30 30 H 1.09000 * 109.46680 * 299.99234 * 1 2 3 31 31 H 1.08996 * 109.47284 * 59.99516 * 1 2 3 32 32 H 1.08998 * 109.47019 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47374 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47517 * 300.00763 * 3 2 1 35 35 H 1.09003 * 109.46870 * 60.00284 * 3 2 1 36 36 H 1.08998 * 109.47175 * 299.99818 * 4 2 1 37 37 H 1.09008 * 109.47141 * 59.99466 * 4 2 1 38 38 H 1.08997 * 109.47384 * 179.97438 * 4 2 1 39 39 H 0.97006 * 120.00057 * 0.02562 * 8 6 5 40 40 H 1.08990 * 109.47137 * 59.99914 * 9 8 6 41 41 H 1.09003 * 109.46808 * 299.99976 * 9 8 6 42 42 H 1.08995 * 109.47882 * 60.00189 * 10 9 8 43 43 H 1.09003 * 109.46935 * 299.99344 * 10 9 8 44 44 H 0.96996 * 120.00209 * 359.97438 * 13 11 10 45 45 H 0.96998 * 119.99380 * 180.02562 * 19 18 16 46 46 H 1.07997 * 120.00145 * 359.97438 * 25 24 14 47 47 H 1.08003 * 119.99553 * 179.97438 * 26 25 24 48 48 H 1.08002 * 120.00026 * 179.72056 * 27 26 25 49 49 H 1.07997 * 120.00280 * 179.97438 * 28 27 26 50 50 H 1.08003 * 119.99986 * 0.02562 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2494 5 8 2.0141 -0.6846 1.1854 6 6 1.6523 -1.9724 1.3381 7 8 0.9516 -2.5098 0.5034 8 7 2.0682 -2.6659 2.4163 9 6 1.6750 -4.0674 2.5822 10 6 2.2751 -4.6154 3.8785 11 6 1.8702 -6.0570 4.0495 12 8 1.1700 -6.5930 3.2167 13 7 2.2859 -6.7504 5.1277 14 6 1.8927 -8.1519 5.2936 15 1 1.8460 -8.6342 4.3172 16 6 0.5389 -8.2191 5.9523 17 1 -0.2625 -8.7714 5.4843 18 6 0.3236 -7.5755 7.1525 19 7 1.2274 -6.7452 7.6249 20 14 -1.2521 -7.8831 8.1076 21 1 -1.0521 -9.0225 9.0387 22 1 -1.6066 -6.6669 8.8824 23 1 -2.3501 -8.2044 7.1608 24 6 2.9064 -8.8594 6.1554 25 6 3.1963 -10.1919 5.9290 26 6 4.1266 -10.8407 6.7193 27 6 4.7675 -10.1569 7.7354 28 6 4.4785 -8.8241 7.9610 29 6 3.5466 -8.1758 7.1721 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1301 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 -1.7488 -1.2494 37 1 1.6765 -0.2072 -2.1393 38 1 3.1300 -0.7208 -1.2496 39 1 2.6279 -2.2371 3.0825 40 1 2.0413 -4.6500 1.7370 41 1 0.5881 -4.1369 2.6275 42 1 1.9084 -4.0328 4.7235 43 1 3.3620 -4.5459 3.8335 44 1 2.8462 -6.3218 5.7935 45 1 1.0760 -6.2927 8.4694 46 1 2.6961 -10.7260 5.1347 47 1 4.3528 -11.8819 6.5426 48 1 5.4910 -10.6651 8.3557 49 1 4.9789 -8.2899 8.7551 50 1 3.3201 -7.1348 7.3491 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408513995.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:12 Heat of formation + Delta-G solvation = -98.893092 kcal Electronic energy + Delta-G solvation = -30410.718963 eV Core-core repulsion = 26209.865195 eV Total energy + Delta-G solvation = -4200.853768 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 348.188 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.75245 -39.05250 -38.12147 -37.37142 -35.10509 -34.51251 -34.02720 -31.97107 -30.87583 -30.12141 -29.68908 -27.60341 -27.52887 -26.91279 -24.39057 -22.97853 -21.91548 -21.64496 -20.41381 -20.07457 -19.17765 -18.16270 -16.84667 -16.65602 -16.44208 -16.31649 -15.76466 -15.21057 -14.91899 -14.73469 -14.67311 -14.39464 -14.37134 -13.98409 -13.52527 -13.48232 -13.24114 -12.73801 -12.67830 -12.46000 -12.44746 -12.26901 -12.06753 -12.06114 -11.95555 -11.76235 -11.64453 -11.55011 -11.43845 -11.14043 -11.04075 -10.85304 -10.54861 -10.46204 -10.24071 -10.06910 -9.89626 -9.67313 -9.09154 -8.97902 -8.69520 -8.08179 -7.80714 -7.54532 -6.26121 -4.32502 2.14708 2.24500 2.31808 2.88820 3.20382 3.27356 3.32580 3.67206 4.04009 4.27718 4.45618 4.54262 4.58120 4.72734 4.74772 5.02544 5.08396 5.26063 5.34519 5.36896 5.44509 5.49307 5.57939 5.61668 5.63380 5.69217 5.71538 5.78314 5.81266 5.94999 6.05748 6.13612 6.15400 6.17612 6.21839 6.42168 6.42465 6.50931 6.51546 6.75009 6.86430 7.04496 7.26650 7.39343 7.45690 7.63276 7.71464 7.89161 7.93111 8.02586 8.42049 8.61262 8.85695 9.35085 9.42817 10.74276 Molecular weight = 348.19amu Principal moments of inertia in cm(-1) A = 0.014719 B = 0.002179 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.810457 B =12849.266482 C =13783.555512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.368 6.368 6 C 0.648 3.352 7 O -0.565 6.565 8 N -0.710 5.710 9 C 0.154 3.846 10 C -0.154 4.154 11 C 0.511 3.489 12 O -0.563 6.563 13 N -0.679 5.679 14 C 0.294 3.706 15 H 0.054 0.946 16 C -0.512 4.512 17 H 0.065 0.935 18 C 0.078 3.922 19 N -0.878 5.878 20 Si 0.896 3.104 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.273 1.273 24 C -0.044 4.044 25 C -0.126 4.126 26 C -0.135 4.135 27 C -0.149 4.149 28 C -0.137 4.137 29 C -0.093 4.093 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.404 0.596 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.393 0.607 45 H 0.264 0.736 46 H 0.111 0.889 47 H 0.106 0.894 48 H 0.103 0.897 49 H 0.105 0.895 50 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.028 12.024 -7.108 15.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.283 6.283 6 C 0.400 3.600 7 O -0.454 6.454 8 N -0.369 5.369 9 C 0.032 3.968 10 C -0.194 4.194 11 C 0.295 3.705 12 O -0.444 6.444 13 N -0.327 5.327 14 C 0.192 3.808 15 H 0.072 0.928 16 C -0.550 4.550 17 H 0.083 0.917 18 C -0.126 4.126 19 N -0.515 5.515 20 Si 0.724 3.276 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.197 1.197 24 C -0.045 4.045 25 C -0.144 4.144 26 C -0.153 4.153 27 C -0.168 4.168 28 C -0.155 4.155 29 C -0.111 4.111 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.238 0.762 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.114 0.886 43 H 0.108 0.892 44 H 0.229 0.771 45 H 0.074 0.926 46 H 0.129 0.871 47 H 0.124 0.876 48 H 0.121 0.879 49 H 0.123 0.877 50 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 6.193 11.526 -7.995 15.334 hybrid contribution -0.429 0.235 1.593 1.666 sum 5.764 11.761 -6.402 14.578 Atomic orbital electron populations 1.22522 0.94014 1.05273 1.02340 1.22032 0.94393 0.91414 0.82237 1.21855 1.02171 0.92667 1.03025 1.22521 1.01479 1.03707 0.96393 1.86283 1.71724 1.23909 1.46409 1.18059 0.79095 0.80351 0.82455 1.90916 1.40940 1.70335 1.43233 1.44838 1.55459 1.13136 1.23489 1.21068 1.01037 0.77105 0.97566 1.21804 1.02331 0.96728 0.98582 1.19794 0.81157 0.86997 0.82588 1.90643 1.38811 1.70890 1.44038 1.46442 1.50666 1.13859 1.21766 1.17597 0.90965 0.78444 0.93761 0.92822 1.21395 0.95784 1.32330 1.05456 0.91654 1.24906 0.96898 0.93880 0.96946 1.69681 1.34699 1.26490 1.20608 0.86504 0.83374 0.77812 0.79897 1.20487 1.21182 1.19723 1.20441 0.93145 0.93987 0.96964 1.20882 0.98353 0.94915 1.00264 1.20855 0.98531 0.98843 0.97061 1.20855 1.01555 0.95143 0.99215 1.21100 0.99453 0.94836 1.00097 1.21586 0.93382 1.02468 0.93701 0.92191 0.91265 0.89203 0.91529 0.90245 0.91514 0.89213 0.91270 0.92231 0.76180 0.90375 0.90202 0.88582 0.89198 0.77113 0.92601 0.87113 0.87569 0.87858 0.87657 0.83418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.93 8.37 37.16 0.31 -1.61 16 2 C 0.14 1.41 1.13 -90.62 -0.10 1.31 16 3 C -0.14 -1.03 8.85 37.16 0.33 -0.70 16 4 C -0.18 -1.87 8.37 37.16 0.31 -1.56 16 5 O -0.37 -4.59 9.94 -40.31 -0.40 -4.99 16 6 C 0.65 9.30 8.06 54.05 0.44 9.74 16 7 O -0.57 -9.59 11.88 -19.28 -0.23 -9.82 16 8 N -0.71 -9.02 5.56 -65.28 -0.36 -9.38 16 9 C 0.15 2.33 4.96 -4.04 -0.02 2.31 16 10 C -0.15 -2.23 5.81 -27.88 -0.16 -2.39 16 11 C 0.51 10.35 7.79 -10.99 -0.09 10.26 16 12 O -0.56 -13.57 15.65 5.55 0.09 -13.48 16 13 N -0.68 -14.16 4.06 -56.06 -0.23 -14.39 16 14 C 0.29 6.84 2.45 -70.23 -0.17 6.66 16 15 H 0.05 1.31 7.50 -51.93 -0.39 0.92 16 16 C -0.51 -13.23 8.82 -34.44 -0.30 -13.53 16 17 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 18 C 0.08 1.94 5.19 -17.82 -0.09 1.85 16 19 N -0.88 -20.93 8.92 55.43 0.49 -20.44 16 20 Si 0.90 20.40 29.55 -169.99 -5.02 15.38 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 24 C -0.04 -0.94 4.84 -104.63 -0.51 -1.45 16 25 C -0.13 -2.47 9.69 -39.58 -0.38 -2.85 16 26 C -0.13 -2.36 10.05 -39.58 -0.40 -2.75 16 27 C -0.15 -2.55 10.05 -39.58 -0.40 -2.95 16 28 C -0.14 -2.47 10.05 -39.58 -0.40 -2.87 16 29 C -0.09 -1.88 7.93 -39.58 -0.31 -2.19 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 1.19 5.88 -51.93 -0.31 0.89 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.09 1.16 5.88 -51.93 -0.31 0.86 16 37 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.40 3.98 8.58 -40.82 -0.35 3.63 16 40 H 0.08 1.28 8.10 -51.93 -0.42 0.86 16 41 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 42 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.39 7.66 6.04 -40.82 -0.25 7.41 16 45 H 0.26 6.14 8.31 -40.82 -0.34 5.80 16 46 H 0.11 2.04 8.06 -52.49 -0.42 1.62 16 47 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 48 H 0.10 1.47 8.06 -52.49 -0.42 1.05 16 49 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 50 H 0.15 3.06 4.72 -52.48 -0.25 2.81 16 LS Contribution 405.73 15.07 6.11 6.11 Total: -1.00 -29.73 405.73 -9.22 -38.96 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: -7.73 Total: 14.78 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -1.95 Total: -2.74 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: -0.10 Total: -44.21 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.54 Total: -28.29 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -29.73 -9.22 -38.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408513995.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.935 kcal (2) G-P(sol) polarization free energy of solvation -29.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds