Wall clock time and date at job start Tue Mar 31 2020 05:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38109 * 120.03697 * 2 1 4 4 C 1.38355 * 120.06521 * 180.27598 * 3 2 1 5 5 Br 1.89101 * 119.93436 * 179.74033 * 4 3 2 6 6 C 1.38362 * 120.13125 * 359.71883 * 4 3 2 7 7 C 1.38106 * 120.06307 * 359.97438 * 6 4 3 8 8 C 1.50704 * 120.03004 * 180.02562 * 7 6 4 9 9 C 1.38896 * 119.93674 * 0.02562 * 7 6 4 10 10 N 1.39724 * 120.06514 * 180.02562 * 9 7 6 11 11 C 1.46909 * 111.00065 * 119.99985 * 10 9 7 12 12 C 1.50695 * 109.47244 * 179.97438 * 11 10 9 13 13 N 1.30483 * 125.74379 * 89.97484 * 12 11 10 14 14 C 1.34250 * 109.40304 * 179.97438 * 13 12 11 15 15 C 1.34632 * 108.27701 * 0.26454 * 14 13 12 16 16 N 1.36270 * 125.74383 * 269.97927 * 12 11 10 17 17 C 1.37559 * 126.51292 * 359.97438 * 16 12 11 18 18 H 1.07998 * 120.00368 * 0.02562 * 17 16 12 19 19 C 1.38946 * 119.99861 * 180.02562 * 17 16 12 20 20 N 1.31322 * 119.99841 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99860 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46904 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47023 * 120.00010 * 21 19 17 24 24 H 1.48496 * 109.47196 * 240.00337 * 21 19 17 25 25 H 1.09001 * 109.47594 * 270.30607 * 1 2 3 26 26 H 1.09001 * 109.46906 * 30.30384 * 1 2 3 27 27 H 1.08998 * 109.47491 * 150.30211 * 1 2 3 28 28 H 1.07992 * 119.96508 * 0.02562 * 3 2 1 29 29 H 1.08003 * 119.96828 * 179.97438 * 6 4 3 30 30 H 1.09002 * 109.47253 * 269.97648 * 8 7 6 31 31 H 1.08999 * 109.47219 * 29.97634 * 8 7 6 32 32 H 1.09002 * 109.46871 * 149.97569 * 8 7 6 33 33 H 1.00897 * 111.00098 * 356.04935 * 10 9 7 34 34 H 1.08995 * 109.46774 * 59.99713 * 11 10 9 35 35 H 1.09005 * 109.46881 * 300.00342 * 11 10 9 36 36 H 1.08002 * 125.85845 * 179.97438 * 14 13 12 37 37 H 1.08002 * 126.58439 * 179.73460 * 15 14 13 38 38 H 0.96999 * 119.99902 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1956 0.0000 4 6 3.5818 1.1963 -0.0058 5 35 4.5246 2.8355 -0.0132 6 6 4.2769 0.0000 -0.0057 7 6 3.5911 -1.1987 0.0007 8 6 4.3490 -2.5013 0.0014 9 6 2.2021 -1.2026 0.0065 10 7 1.5055 -2.4138 0.0135 11 6 0.6536 -2.5242 1.2052 12 6 -0.0807 -3.8399 1.1776 13 7 0.3452 -4.9614 1.6909 14 6 -0.5671 -5.9234 1.4797 15 6 -1.5998 -5.3850 0.8043 16 7 -1.3012 -4.0587 0.6124 17 6 -2.0834 -3.1285 -0.0318 18 1 -1.7419 -2.1083 -0.1266 19 6 -3.3131 -3.5014 -0.5605 20 7 -3.7286 -4.7417 -0.4448 21 14 -4.3751 -2.2383 -1.4360 22 1 -3.6850 -0.9234 -1.4321 23 1 -4.6058 -2.6716 -2.8375 24 1 -5.6783 -2.1160 -0.7347 25 1 -0.3634 0.0055 1.0276 26 1 -0.3633 0.8873 -0.5186 27 1 -0.3634 -0.8926 -0.5091 28 1 1.6583 2.1309 0.0004 29 1 5.3569 0.0036 -0.0106 30 1 4.5271 -2.8186 -1.0261 31 1 5.3033 -2.3662 0.5105 32 1 3.7648 -3.2613 0.5203 33 1 2.1396 -3.1959 -0.0514 34 1 -0.0670 -1.7065 1.2137 35 1 1.2729 -2.4720 2.1007 36 1 -0.4844 -6.9536 1.7934 37 1 -2.4927 -5.8975 0.4779 38 1 -4.5869 -5.0022 -0.8142 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408514012.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:19 Heat of formation + Delta-G solvation = 84.268071 kcal Electronic energy + Delta-G solvation = -22370.832054 eV Core-core repulsion = 19067.110129 eV Total energy + Delta-G solvation = -3303.721926 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 349.049 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.55264 -39.91135 -35.79211 -34.07618 -33.70484 -31.86699 -30.90705 -29.51095 -28.76605 -26.88406 -26.55280 -25.40586 -23.90940 -20.99570 -20.82507 -20.27893 -19.06419 -17.83153 -16.91934 -16.24022 -15.50824 -14.87349 -14.50158 -14.26562 -14.02852 -13.87782 -13.57400 -13.15876 -13.06454 -12.96337 -12.74873 -12.52720 -12.23476 -12.10571 -11.88282 -11.82722 -11.57471 -11.38458 -11.13707 -10.82932 -10.67590 -10.61540 -10.44556 -10.28020 -9.80700 -9.39441 -8.62329 -8.56408 -8.42166 -7.62941 -6.90767 -6.78266 -4.55694 1.20018 1.32055 1.67509 2.86086 2.97222 3.02381 3.45449 3.67742 3.73466 4.26745 4.60839 4.71535 4.79158 4.90895 4.95105 5.13888 5.28802 5.34079 5.55642 5.57254 5.60572 5.65314 5.79649 5.83853 5.96921 6.00315 6.10833 6.18470 6.26486 6.34179 6.53177 6.70418 6.73323 6.91712 6.98877 7.29484 7.43700 7.53252 7.59653 8.20138 8.39901 8.72366 9.35932 9.64816 10.16402 Molecular weight = 349.05amu Principal moments of inertia in cm(-1) A = 0.016113 B = 0.003117 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.361080 B = 8981.632476 C =10438.298103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.097 4.097 3 C -0.073 4.073 4 C -0.118 4.118 5 Br -0.068 7.068 6 C -0.071 4.071 7 C -0.133 4.133 8 C -0.114 4.114 9 C 0.145 3.855 10 N -0.624 5.624 11 C 0.161 3.839 12 C 0.079 3.921 13 N -0.511 5.511 14 C -0.101 4.101 15 C -0.051 4.051 16 N -0.250 5.250 17 C -0.327 4.327 18 H 0.115 0.885 19 C 0.042 3.958 20 N -0.840 5.840 21 Si 0.941 3.059 22 H -0.261 1.261 23 H -0.273 1.273 24 H -0.274 1.274 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.092 0.908 28 H 0.129 0.871 29 H 0.127 0.873 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.362 0.638 34 H 0.097 0.903 35 H 0.052 0.948 36 H 0.142 0.858 37 H 0.194 0.806 38 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.576 12.380 -0.796 16.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.100 4.100 3 C -0.093 4.093 4 C -0.198 4.198 5 Br 0.017 6.983 6 C -0.091 4.091 7 C -0.137 4.137 8 C -0.171 4.171 9 C 0.043 3.957 10 N -0.248 5.248 11 C 0.035 3.965 12 C -0.176 4.176 13 N -0.234 5.234 14 C -0.254 4.254 15 C -0.195 4.195 16 N 0.085 4.915 17 C -0.457 4.457 18 H 0.132 0.868 19 C -0.168 4.168 20 N -0.472 5.472 21 Si 0.765 3.235 22 H -0.185 1.185 23 H -0.198 1.198 24 H -0.199 1.199 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.110 0.890 28 H 0.147 0.853 29 H 0.145 0.855 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.187 0.813 34 H 0.115 0.885 35 H 0.070 0.930 36 H 0.159 0.841 37 H 0.210 0.790 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.855 13.069 -0.906 17.668 hybrid contribution -0.932 -0.102 -0.388 1.015 sum 10.923 12.968 -1.295 17.004 Atomic orbital electron populations 1.21032 0.90153 1.04097 1.02452 1.19540 0.96528 0.90816 1.03141 1.20786 0.91744 0.98024 0.98748 1.21443 0.94450 0.90909 1.12981 1.96627 1.75683 1.27995 1.98042 1.20693 0.99497 0.90075 0.98852 1.19949 0.92783 0.95572 1.05437 1.20727 0.99878 0.93838 1.02677 1.18787 0.90479 0.91016 0.95455 1.57536 1.24871 1.02709 1.39722 1.20116 0.94410 0.93395 0.88552 1.22106 0.89163 0.95940 1.10379 1.69725 1.30626 0.98831 1.24173 1.21781 0.94769 0.98258 1.10556 1.23667 1.03539 0.84590 1.07697 1.41569 1.11639 1.07603 1.30686 1.20146 0.99263 0.92721 1.33529 0.86781 1.25547 0.97497 0.97316 0.96425 1.69726 1.20664 1.16591 1.40177 0.85623 0.79191 0.79761 0.78880 1.18483 1.19842 1.19885 0.90990 0.91747 0.88988 0.85261 0.85482 0.90872 0.91138 0.91141 0.81317 0.88461 0.92976 0.84087 0.78962 0.91013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.76 8.10 36.00 0.29 -1.47 16 2 C -0.10 -1.42 5.75 -104.42 -0.60 -2.02 16 3 C -0.07 -0.96 9.44 -39.59 -0.37 -1.33 16 4 C -0.12 -1.50 6.22 -39.49 -0.25 -1.75 16 5 Br -0.07 -0.76 33.70 -68.01 -2.29 -3.05 16 6 C -0.07 -0.89 9.43 -39.58 -0.37 -1.26 16 7 C -0.13 -1.80 5.90 -104.42 -0.62 -2.41 16 8 C -0.11 -1.32 9.39 36.01 0.34 -0.98 16 9 C 0.14 2.23 5.74 -83.77 -0.48 1.74 16 10 N -0.62 -10.85 5.95 -59.52 -0.35 -11.20 16 11 C 0.16 3.09 5.30 -4.97 -0.03 3.06 16 12 C 0.08 1.87 7.42 -154.30 -1.14 0.73 16 13 N -0.51 -12.55 11.24 -10.52 -0.12 -12.67 16 14 C -0.10 -2.45 11.85 -17.77 -0.21 -2.66 16 15 C -0.05 -1.31 10.40 -16.38 -0.17 -1.48 16 16 N -0.25 -6.36 2.93 -58.87 -0.17 -6.54 16 17 C -0.33 -8.04 9.92 -14.72 -0.15 -8.18 16 18 H 0.11 2.59 5.15 -52.49 -0.27 2.32 16 19 C 0.04 0.99 5.48 -17.51 -0.10 0.90 16 20 N -0.84 -20.82 10.19 55.49 0.57 -20.25 16 21 Si 0.94 18.18 29.55 -169.99 -5.02 13.15 16 22 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 23 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 24 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 25 H 0.07 1.00 7.05 -51.93 -0.37 0.63 16 26 H 0.06 0.81 8.09 -51.93 -0.42 0.39 16 27 H 0.09 1.57 4.97 -51.93 -0.26 1.32 16 28 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 29 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 32 H 0.07 0.88 6.43 -51.93 -0.33 0.55 16 33 H 0.36 6.21 6.00 -39.29 -0.24 5.97 16 34 H 0.10 1.80 3.62 -51.93 -0.19 1.61 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.14 3.01 8.06 -52.49 -0.42 2.59 16 37 H 0.19 5.03 5.60 -52.49 -0.29 4.73 16 38 H 0.28 6.36 8.31 -40.82 -0.34 6.02 16 LS Contribution 328.97 15.07 4.96 4.96 Total: -1.00 -27.25 328.97 -10.33 -37.57 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -4.03 Total: 15.14 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: -3.85 Total: -17.11 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: -0.08 Total: -50.66 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.02 Total: 13.15 kcal Atomic # 35 Polarization: -0.76 SS G_CDS: -2.29 Total: -3.05 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.25 -10.33 -37.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408514012.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.839 kcal (2) G-P(sol) polarization free energy of solvation -27.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds