Wall clock time and date at job start Tue Mar 31 2020 06:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30677 * 1 3 3 Si 1.86792 * 120.00286 * 2 1 4 4 H 1.48498 * 109.47124 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47368 * 119.99693 * 3 2 1 6 6 H 1.48501 * 109.47066 * 239.99497 * 3 2 1 7 7 C 1.40056 * 119.99443 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99494 * 180.02562 * 7 2 1 9 9 C 1.46371 * 120.00228 * 0.02562 * 7 2 1 10 10 O 1.21681 * 119.99941 * 354.97107 * 9 7 2 11 11 N 1.34777 * 119.99600 * 174.97361 * 9 7 2 12 12 C 1.47075 * 120.88223 * 4.98108 * 11 9 7 13 13 C 1.53698 * 108.27437 * 128.75769 * 12 11 9 14 14 N 1.46899 * 109.26006 * 54.07903 * 13 12 11 15 15 C 1.46894 * 110.99995 * 172.60700 * 14 13 12 16 16 C 1.53000 * 109.47347 * 294.30273 * 15 14 13 17 17 C 1.50705 * 109.47143 * 179.97438 * 16 15 14 18 18 O 1.21283 * 119.99786 * 0.02562 * 17 16 15 19 19 N 1.34778 * 119.99639 * 179.97438 * 17 16 15 20 20 C 1.40033 * 119.99543 * 185.09948 * 19 17 16 21 21 C 1.38852 * 120.04201 * 213.07834 * 20 19 17 22 22 C 1.38114 * 119.95268 * 179.77413 * 21 20 19 23 23 C 1.38472 * 120.04309 * 0.50025 * 22 21 20 24 24 F 1.35106 * 119.95353 * 179.72660 * 23 22 21 25 25 C 1.38476 * 120.09425 * 359.75374 * 23 22 21 26 26 C 1.38109 * 120.04174 * 359.97438 * 25 23 22 27 27 C 1.46899 * 111.26950 * 296.75773 * 14 13 12 28 28 C 1.47080 * 120.87624 * 185.25718 * 11 9 7 29 29 H 0.96999 * 119.99750 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.62727 * 248.51630 * 12 11 9 31 31 H 1.08995 * 109.62835 * 9.10267 * 12 11 9 32 32 H 1.08997 * 109.64738 * 294.07704 * 13 12 11 33 33 H 1.09005 * 109.42307 * 173.94899 * 13 12 11 34 34 H 1.09000 * 109.47343 * 54.30475 * 15 14 13 35 35 H 1.08997 * 109.47277 * 174.29954 * 15 14 13 36 36 H 1.09003 * 109.47394 * 299.99963 * 16 15 14 37 37 H 1.08997 * 109.47005 * 60.00150 * 16 15 14 38 38 H 0.96996 * 120.00502 * 5.10220 * 19 17 16 39 39 H 1.07995 * 120.02379 * 0.02562 * 21 20 19 40 40 H 1.07996 * 119.97972 * 180.22884 * 22 21 20 41 41 H 1.07997 * 119.97596 * 179.97438 * 25 23 22 42 42 H 1.08001 * 120.02333 * 179.97438 * 26 25 23 43 43 H 1.09000 * 109.49181 * 303.14728 * 27 14 13 44 44 H 1.09000 * 109.51644 * 183.07885 * 27 14 13 45 45 H 1.09005 * 109.63265 * 350.90192 * 28 11 9 46 46 H 1.09006 * 109.62667 * 111.47803 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 1.2759 2.7464 -0.0006 5 1 3.0946 1.6963 1.2126 6 1 3.0947 1.6962 -1.2124 7 6 2.0069 -1.2130 0.0005 8 1 3.0870 -1.2130 0.0010 9 6 1.2750 -2.4806 0.0005 10 8 0.0617 -2.4825 0.0924 11 7 1.9451 -3.6455 -0.1012 12 6 3.4156 -3.6729 -0.1038 13 6 3.8805 -4.6908 0.9497 14 7 3.2353 -5.9849 0.6910 15 6 3.7833 -7.0305 1.5653 16 6 5.2527 -7.2711 1.2134 17 6 5.8150 -8.3434 2.1108 18 8 5.1098 -8.8641 2.9489 19 7 7.1013 -8.7243 1.9812 20 6 7.5950 -9.7926 2.7401 21 6 8.9165 -9.7906 3.1660 22 6 9.4002 -10.8431 3.9184 23 6 8.5709 -11.9046 4.2391 24 9 9.0474 -12.9358 4.9705 25 6 7.2541 -11.9111 3.8109 26 6 6.7650 -10.8579 3.0631 27 6 1.7763 -5.8908 0.8335 28 6 1.2250 -4.9226 -0.2186 29 1 -0.4850 0.8401 -0.0004 30 1 3.7745 -3.9712 -1.0889 31 1 3.8006 -2.6841 0.1454 32 1 3.6060 -4.3400 1.9445 33 1 4.9629 -4.8056 0.8899 34 1 3.7060 -6.7122 2.6049 35 1 3.2203 -7.9532 1.4252 36 1 5.3300 -7.5895 0.1738 37 1 5.8157 -6.3484 1.3536 38 1 7.6852 -8.2584 1.3624 39 1 9.5647 -8.9648 2.9127 40 1 10.4270 -10.8402 4.2530 41 1 6.6091 -12.7402 4.0618 42 1 5.7380 -10.8635 2.7289 43 1 1.5311 -5.5232 1.8299 44 1 1.3321 -6.8758 0.6897 45 1 0.1611 -4.7605 -0.0454 46 1 1.3774 -5.3387 -1.2146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408523558.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:58 Heat of formation + Delta-G solvation = -73.113702 kcal Electronic energy + Delta-G solvation = -29378.658416 eV Core-core repulsion = 24990.036310 eV Total energy + Delta-G solvation = -4388.622106 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 349.159 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.21438 -40.97215 -39.10921 -38.56303 -36.65707 -35.08923 -33.87049 -32.52509 -31.62138 -31.46010 -30.48574 -29.26820 -27.04771 -25.69856 -23.90839 -23.41168 -23.15601 -22.07717 -20.84606 -20.44281 -18.86618 -18.37342 -17.82369 -17.61302 -16.66356 -16.54204 -15.92035 -15.84223 -15.74242 -15.13682 -14.83788 -14.66794 -14.46126 -14.34500 -14.14820 -14.04154 -13.94405 -13.68815 -13.37903 -13.30718 -13.10253 -12.76308 -12.52665 -12.17869 -11.73447 -11.60614 -11.50670 -11.31323 -11.14654 -10.94119 -10.89564 -10.76634 -10.70976 -10.42383 -10.27322 -10.20887 -9.99198 -9.55711 -8.87973 -8.48318 -8.25516 -7.61251 -7.21171 -6.22302 -4.67663 0.62361 0.78114 2.17322 2.52674 3.12599 3.17864 3.19195 3.19348 3.88435 3.90759 4.06927 4.26031 4.40166 4.46594 4.52062 4.57288 4.71573 4.75556 4.87843 4.91868 5.08123 5.30841 5.33575 5.44112 5.49607 5.58198 5.66597 5.67080 5.73369 5.76533 5.79233 5.82497 5.85743 5.89627 5.97405 6.06743 6.22969 6.42457 6.48720 6.51889 6.68323 6.87668 7.15850 7.22851 7.42072 7.58900 7.68332 8.10021 8.33445 8.99036 9.41770 10.54991 10.73537 Molecular weight = 349.16amu Principal moments of inertia in cm(-1) A = 0.025076 B = 0.001646 C = 0.001574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.348833 B =17002.630613 C =17779.160587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.072 0.928 9 C 0.559 3.441 10 O -0.578 6.578 11 N -0.645 5.645 12 C 0.129 3.871 13 C 0.036 3.964 14 N -0.538 5.538 15 C 0.070 3.930 16 C -0.136 4.136 17 C 0.517 3.483 18 O -0.517 6.517 19 N -0.677 5.677 20 C 0.141 3.859 21 C -0.119 4.119 22 C -0.133 4.133 23 C 0.078 3.922 24 F -0.141 7.141 25 C -0.132 4.132 26 C -0.094 4.094 27 C 0.047 3.953 28 C 0.125 3.875 29 H 0.269 0.731 30 H 0.050 0.950 31 H 0.094 0.906 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.040 0.960 35 H 0.080 0.920 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.414 0.586 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.145 0.855 43 H 0.036 0.964 44 H 0.074 0.926 45 H 0.086 0.914 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.018 -19.674 3.457 28.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.090 0.910 9 C 0.365 3.635 10 O -0.461 6.461 11 N -0.384 5.384 12 C 0.004 3.996 13 C -0.093 4.093 14 N -0.263 5.263 15 C -0.059 4.059 16 C -0.176 4.176 17 C 0.305 3.695 18 O -0.392 6.392 19 N -0.323 5.323 20 C 0.047 3.953 21 C -0.140 4.140 22 C -0.152 4.152 23 C 0.058 3.942 24 F -0.120 7.120 25 C -0.151 4.151 26 C -0.114 4.114 27 C -0.082 4.082 28 C 0.001 3.999 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.112 0.888 32 H 0.055 0.945 33 H 0.092 0.908 34 H 0.058 0.942 35 H 0.098 0.902 36 H 0.127 0.873 37 H 0.118 0.882 38 H 0.251 0.749 39 H 0.155 0.845 40 H 0.157 0.843 41 H 0.157 0.843 42 H 0.163 0.837 43 H 0.054 0.946 44 H 0.093 0.907 45 H 0.105 0.895 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 18.668 -20.028 3.611 27.616 hybrid contribution 0.908 1.002 0.715 1.529 sum 19.576 -19.026 4.326 27.639 Atomic orbital electron populations 1.70005 1.07072 1.27428 1.35114 1.25731 0.94617 1.00289 0.92598 0.86452 0.79864 0.81132 0.79429 1.20550 1.19284 1.19230 1.20928 0.93497 0.89271 1.54482 0.91016 1.18248 0.86913 0.82204 0.76099 1.90589 1.14410 1.86082 1.55023 1.48245 1.04727 1.05857 1.79541 1.21564 0.82789 0.98568 0.96669 1.22746 0.98147 0.89437 0.98949 1.61949 1.05280 1.05835 1.53188 1.21767 0.92745 0.96209 0.95152 1.21694 0.98147 0.97521 1.00258 1.21072 0.80850 0.83612 0.83945 1.90738 1.58298 1.55504 1.34630 1.43662 1.12714 1.33048 1.42860 1.17797 0.93237 0.88307 0.95970 1.20761 0.94741 0.99341 0.99156 1.20931 1.00522 0.93414 1.00376 1.17703 0.93142 0.86662 0.96678 1.91501 1.88640 1.56813 1.75052 1.21074 0.94038 1.00210 0.99822 1.21057 1.01013 0.90948 0.98379 1.22503 0.86685 0.99859 0.99145 1.21213 0.97961 0.84356 0.96390 0.92013 0.93170 0.88805 0.94491 0.90829 0.94162 0.90152 0.87311 0.88223 0.74946 0.84542 0.84327 0.84338 0.83702 0.94615 0.90738 0.89528 0.93235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.76 11.84 55.55 0.66 -22.11 16 2 C 0.09 2.40 5.50 -17.36 -0.10 2.30 16 3 Si 0.91 19.67 29.56 -169.99 -5.02 14.64 16 4 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.55 -14.98 8.86 -35.63 -0.32 -15.30 16 8 H 0.07 1.77 5.74 -52.48 -0.30 1.47 16 9 C 0.56 15.76 7.63 -12.99 -0.10 15.66 16 10 O -0.58 -18.62 14.49 5.21 0.08 -18.54 16 11 N -0.64 -14.47 3.00 -173.84 -0.52 -14.99 16 12 C 0.13 2.30 6.50 -3.37 -0.02 2.27 16 13 C 0.04 0.52 5.48 -3.46 -0.02 0.50 16 14 N -0.54 -7.44 4.63 -234.03 -1.08 -8.53 16 15 C 0.07 0.81 4.25 -3.83 -0.02 0.79 16 16 C -0.14 -1.10 5.63 -27.88 -0.16 -1.26 16 17 C 0.52 4.71 7.57 -10.98 -0.08 4.63 16 18 O -0.52 -6.66 13.66 5.56 0.08 -6.58 16 19 N -0.68 -4.46 5.35 -9.84 -0.05 -4.51 16 20 C 0.14 1.12 6.28 -83.66 -0.53 0.60 16 21 C -0.12 -0.75 9.96 -39.40 -0.39 -1.15 16 22 C -0.13 -0.91 10.02 -39.54 -0.40 -1.31 16 23 C 0.08 0.66 7.30 -39.41 -0.29 0.37 16 24 F -0.14 -1.31 17.27 2.25 0.04 -1.27 16 25 C -0.13 -1.10 10.02 -39.54 -0.40 -1.50 16 26 C -0.09 -0.85 8.66 -39.40 -0.34 -1.19 16 27 C 0.05 0.74 5.62 -3.70 -0.02 0.72 16 28 C 0.13 2.44 6.61 -3.60 -0.02 2.41 16 29 H 0.27 7.26 8.29 -40.82 -0.34 6.92 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.09 1.73 5.46 -51.93 -0.28 1.45 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.81 6.16 -51.93 -0.32 0.49 16 34 H 0.04 0.53 8.08 -51.93 -0.42 0.11 16 35 H 0.08 0.94 7.93 -51.93 -0.41 0.53 16 36 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.10 0.68 6.40 -51.93 -0.33 0.35 16 38 H 0.41 1.34 8.82 -40.82 -0.36 0.98 16 39 H 0.14 0.51 8.06 -52.49 -0.42 0.08 16 40 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 41 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 42 H 0.15 1.44 6.41 -52.49 -0.34 1.10 16 43 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.07 1.02 7.99 -51.93 -0.41 0.60 16 45 H 0.09 1.88 7.04 -51.93 -0.37 1.52 16 46 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 380.19 15.07 5.73 5.73 Total: -1.00 -36.31 380.19 -9.36 -45.67 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -6.06 Total: 1.92 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: -3.19 Total: 8.57 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: -1.00 Total: -50.14 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: 0.15 Total: -25.12 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.31 -9.36 -45.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408523558.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.442 kcal (2) G-P(sol) polarization free energy of solvation -36.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds