Wall clock time and date at job start Tue Mar 31 2020 05:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46926 * 2 1 4 4 S 1.81405 * 109.47157 * 240.00046 * 2 1 3 5 5 C 1.81396 * 102.99945 * 65.00034 * 4 2 1 6 6 C 1.50697 * 109.47097 * 179.97438 * 5 4 2 7 7 C 1.38233 * 120.00243 * 269.72597 * 6 5 4 8 8 C 1.38234 * 120.00217 * 179.76608 * 7 6 5 9 9 C 1.38234 * 119.99562 * 0.50615 * 8 7 6 10 10 C 1.38234 * 120.00274 * 359.74593 * 9 8 7 11 11 C 1.38234 * 119.99674 * 89.99821 * 6 5 4 12 12 C 1.50699 * 109.47079 * 120.00016 * 2 1 3 13 13 O 1.21301 * 120.00209 * 100.00385 * 12 2 1 14 14 N 1.34784 * 119.99911 * 279.99963 * 12 2 1 15 15 N 1.40103 * 119.99672 * 180.02562 * 14 12 2 16 16 C 1.28009 * 119.99685 * 180.02562 * 15 14 12 17 17 C 1.50699 * 119.99924 * 179.97438 * 16 15 14 18 18 C 1.52997 * 109.47078 * 0.02562 * 17 16 15 19 19 C 1.52997 * 109.47265 * 239.99907 * 17 16 15 20 20 C 1.53006 * 109.46866 * 119.99924 * 17 16 15 21 21 C 1.50699 * 109.46866 * 179.97438 * 20 17 16 22 22 H 1.08003 * 119.99962 * 359.97438 * 21 20 17 23 23 C 1.37874 * 120.00270 * 180.02562 * 21 20 17 24 24 N 1.31522 * 119.99834 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00496 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47574 * 89.99780 * 25 23 21 27 27 H 1.48500 * 109.47346 * 209.99892 * 25 23 21 28 28 H 1.48499 * 109.47067 * 329.99541 * 25 23 21 29 29 H 1.09000 * 109.47412 * 299.99763 * 1 2 3 30 30 H 1.09001 * 109.47052 * 60.00244 * 1 2 3 31 31 H 1.08998 * 109.46926 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47009 * 299.99874 * 5 4 2 33 33 H 1.09006 * 109.47395 * 60.00044 * 5 4 2 34 34 H 1.08005 * 119.99829 * 359.97438 * 7 6 5 35 35 H 1.07995 * 119.99926 * 180.23319 * 8 7 6 36 36 H 1.08005 * 119.99825 * 179.72890 * 9 8 7 37 37 H 1.08007 * 119.99618 * 179.97438 * 10 9 8 38 38 H 1.08003 * 120.00748 * 0.02562 * 11 6 5 39 39 H 0.96997 * 119.99899 * 0.02562 * 14 12 2 40 40 H 1.08001 * 120.00186 * 359.97438 * 16 15 14 41 41 H 1.09001 * 109.46832 * 179.97438 * 18 17 16 42 42 H 1.09002 * 109.47153 * 299.99793 * 18 17 16 43 43 H 1.08996 * 109.46952 * 59.99965 * 18 17 16 44 44 H 1.09000 * 109.47140 * 300.00252 * 19 17 16 45 45 H 1.09001 * 109.47230 * 59.99396 * 19 17 16 46 46 H 1.09001 * 109.47375 * 180.02562 * 19 17 16 47 47 H 1.08993 * 109.46955 * 300.00219 * 20 17 16 48 48 H 1.09000 * 109.47050 * 60.00048 * 20 17 16 49 49 H 0.96992 * 120.00032 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1347 -0.8551 -1.4812 5 6 1.5665 0.2153 -2.8309 6 6 1.9985 -0.3689 -4.1511 7 6 3.2168 -0.0132 -4.6989 8 6 3.6152 -0.5528 -5.9076 9 6 2.7906 -1.4400 -6.5736 10 6 1.5700 -1.7917 -6.0285 11 6 1.1739 -1.2561 -4.8172 12 6 2.0323 -0.7104 1.2305 13 8 2.4066 -1.8618 1.1558 14 7 2.0659 -0.0663 2.4140 15 7 2.5334 -0.7267 3.5578 16 6 2.5648 -0.1151 4.6819 17 6 3.0671 -0.8255 5.9124 18 6 3.4744 -2.2540 5.5459 19 6 1.9590 -0.8652 6.9665 20 6 4.2786 -0.0784 6.4737 21 6 4.7805 -0.7884 7.7045 22 1 4.2847 -1.6829 8.0519 23 6 5.8720 -0.2957 8.3878 24 7 6.4754 0.7938 7.9651 25 14 6.4946 -1.1762 9.9130 26 1 7.5091 -2.1875 9.5214 27 1 7.1099 -0.1901 10.8374 28 1 5.3599 -1.8508 10.5930 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.4792 0.2881 -2.8037 33 1 2.0002 1.2085 -2.7142 34 1 3.8590 0.6838 -4.1807 35 1 4.5687 -0.2777 -6.3336 36 1 3.1000 -1.8583 -7.5202 37 1 0.9256 -2.4847 -6.5492 38 1 0.2199 -1.5304 -4.3917 39 1 1.7663 0.8543 2.4738 40 1 2.2313 0.9099 4.7485 41 1 3.8382 -2.7677 6.4358 42 1 2.6116 -2.7866 5.1457 43 1 4.2640 -2.2254 4.7951 44 1 1.6692 0.1527 7.2275 45 1 1.0958 -1.3973 6.5666 46 1 2.3224 -1.3786 7.8567 47 1 5.0680 -0.0501 5.7227 48 1 3.9888 0.9395 6.7347 49 1 7.2434 1.1403 8.4456 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408720213.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:17 Heat of formation + Delta-G solvation = 13.551645 kcal Electronic energy + Delta-G solvation = -26436.812382 eV Core-core repulsion = 22683.587454 eV Total energy + Delta-G solvation = -3753.224928 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.68206 -39.53329 -37.61144 -35.27541 -33.81425 -33.14393 -32.43935 -31.26036 -30.63032 -27.43676 -27.07049 -26.39568 -25.24488 -23.92319 -22.94907 -22.09796 -21.72231 -20.60187 -18.51895 -17.37263 -17.14726 -16.87797 -16.30868 -16.19204 -15.66647 -15.60151 -15.34440 -14.81829 -14.59289 -14.38920 -13.84287 -13.72179 -13.63981 -13.36118 -13.31198 -13.07532 -12.91401 -12.81665 -12.34043 -12.14439 -12.06600 -11.81123 -11.51375 -11.39643 -11.32777 -10.99697 -10.93555 -10.81389 -10.60254 -10.27226 -10.21257 -10.13259 -9.92828 -9.63791 -9.43713 -9.28117 -9.03817 -8.98106 -8.52898 -8.36796 -7.91049 -6.01720 -4.02722 0.57546 1.05003 1.43268 2.08361 2.22736 2.64543 2.95441 3.32656 3.39386 3.41663 3.49358 4.19757 4.27351 4.35012 4.45292 4.45563 4.60048 4.64481 4.76077 4.76734 4.99787 5.09876 5.12704 5.14428 5.21805 5.25645 5.29294 5.35429 5.58733 5.64057 5.67143 5.86060 5.93961 6.03473 6.08050 6.15296 6.18114 6.36202 6.53310 6.61163 6.64193 6.79657 7.02620 7.08271 7.14124 7.24047 7.58342 7.63988 7.75321 7.96657 8.36946 8.56199 9.01381 9.60594 11.09857 Molecular weight = 348.16amu Principal moments of inertia in cm(-1) A = 0.021248 B = 0.001617 C = 0.001560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.444576 B =17314.245035 C =17947.468744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 H 0.109 0.891 4 S -0.160 6.160 5 C -0.068 4.068 6 C -0.072 4.072 7 C -0.101 4.101 8 C -0.120 4.120 9 C -0.116 4.116 10 C -0.121 4.121 11 C -0.101 4.101 12 C 0.550 3.450 13 O -0.486 6.486 14 N -0.589 5.589 15 N -0.248 5.248 16 C 0.111 3.889 17 C -0.015 4.015 18 C -0.118 4.118 19 C -0.123 4.123 20 C 0.040 3.960 21 C -0.510 4.510 22 H 0.063 0.937 23 C 0.057 3.943 24 N -0.896 5.896 25 Si 0.891 3.109 26 H -0.281 1.281 27 H -0.288 1.288 28 H -0.273 1.273 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.125 0.875 39 H 0.377 0.623 40 H 0.101 0.899 41 H 0.064 0.936 42 H 0.038 0.962 43 H 0.051 0.949 44 H 0.049 0.951 45 H 0.035 0.965 46 H 0.076 0.924 47 H 0.019 0.981 48 H 0.019 0.981 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.217 2.837 -25.884 29.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.230 4.230 3 H 0.127 0.873 4 S 0.069 5.931 5 C -0.216 4.216 6 C -0.073 4.073 7 C -0.121 4.121 8 C -0.138 4.138 9 C -0.135 4.135 10 C -0.139 4.139 11 C -0.121 4.121 12 C 0.333 3.667 13 O -0.357 6.357 14 N -0.331 5.331 15 N -0.049 5.049 16 C -0.104 4.104 17 C -0.018 4.018 18 C -0.176 4.176 19 C -0.181 4.181 20 C 0.002 3.998 21 C -0.549 4.549 22 H 0.081 0.919 23 C -0.144 4.144 24 N -0.535 5.535 25 Si 0.719 3.281 26 H -0.207 1.207 27 H -0.214 1.214 28 H -0.198 1.198 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.215 0.785 40 H 0.118 0.882 41 H 0.083 0.917 42 H 0.057 0.943 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.054 0.946 46 H 0.095 0.905 47 H 0.037 0.963 48 H 0.037 0.963 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.089 0.373 -26.523 29.580 hybrid contribution -0.548 2.359 1.216 2.710 sum -13.637 2.732 -25.307 28.877 Atomic orbital electron populations 1.22013 0.90635 1.04403 1.03082 1.23345 1.00913 1.03283 0.95493 0.87301 1.87888 1.74240 1.34762 0.96180 1.22479 1.04094 1.01064 0.93939 1.19155 0.95468 0.98593 0.94099 1.21086 0.95380 0.99872 0.95748 1.21160 0.99812 0.97501 0.95336 1.21219 0.94522 0.97773 0.99994 1.21153 0.96803 1.00016 0.95908 1.21063 0.99752 0.96184 0.95062 1.19325 0.78517 0.86893 0.81953 1.90768 1.44197 1.16396 1.84310 1.47008 1.64660 1.14498 1.06893 1.74674 1.13266 1.23360 0.93588 1.26738 0.92967 0.97521 0.93191 1.19841 0.97644 0.96141 0.88130 1.21605 1.00146 0.94621 1.01208 1.21715 0.96024 1.01319 0.99027 1.19138 0.89977 0.94941 0.95794 1.21167 1.13050 1.10793 1.09856 0.91937 1.25002 0.96717 0.95031 0.97693 1.69961 1.21586 1.21781 1.40203 0.86608 0.79132 0.79385 0.82973 1.20711 1.21382 1.19815 0.91168 0.91131 0.90341 0.88998 0.89138 0.85724 0.85798 0.85978 0.85832 0.85751 0.78533 0.88171 0.91710 0.94335 0.92992 0.93172 0.94607 0.90525 0.96253 0.96252 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.08 37.16 0.34 -0.74 16 2 C -0.10 -0.98 3.18 -27.88 -0.09 -1.07 16 3 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 4 S -0.16 -1.85 20.38 -107.50 -2.19 -4.04 16 5 C -0.07 -0.52 5.77 36.00 0.21 -0.31 16 6 C -0.07 -0.60 5.14 -104.63 -0.54 -1.14 16 7 C -0.10 -0.83 9.70 -39.58 -0.38 -1.21 16 8 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 9 C -0.12 -0.82 10.05 -39.58 -0.40 -1.22 16 10 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 11 C -0.10 -0.80 9.70 -39.58 -0.38 -1.18 16 12 C 0.55 8.26 7.12 -10.98 -0.08 8.18 16 13 O -0.49 -9.67 16.38 5.54 0.09 -9.58 16 14 N -0.59 -8.51 6.25 31.22 0.20 -8.32 16 15 N -0.25 -4.49 9.70 32.67 0.32 -4.17 16 16 C 0.11 1.91 9.56 -13.87 -0.13 1.78 16 17 C -0.01 -0.29 0.75 -155.66 -0.12 -0.41 16 18 C -0.12 -2.39 7.45 37.16 0.28 -2.11 16 19 C -0.12 -2.13 8.20 37.16 0.30 -1.83 16 20 C 0.04 0.96 4.02 -27.88 -0.11 0.85 16 21 C -0.51 -13.45 7.65 -34.44 -0.26 -13.71 16 22 H 0.06 1.59 5.68 -52.48 -0.30 1.29 16 23 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 24 N -0.90 -26.07 13.29 55.43 0.74 -25.33 16 25 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.38 6.92 -51.93 -0.36 0.02 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 0.55 7.09 -51.92 -0.37 0.18 16 33 H 0.09 0.57 8.08 -51.92 -0.42 0.15 16 34 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 35 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 36 H 0.12 0.61 8.06 -52.48 -0.42 0.18 16 37 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 38 H 0.12 0.82 8.06 -52.48 -0.42 0.39 16 39 H 0.38 3.94 8.63 -182.60 -1.58 2.37 16 40 H 0.10 1.44 8.00 -52.49 -0.42 1.02 16 41 H 0.06 1.33 6.62 -51.93 -0.34 0.99 16 42 H 0.04 0.73 8.06 -51.93 -0.42 0.31 16 43 H 0.05 1.12 8.06 -51.93 -0.42 0.70 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.08 1.42 6.62 -51.93 -0.34 1.08 16 47 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 419.13 15.07 6.32 6.32 Total: -1.00 -33.98 419.13 -10.99 -44.97 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -9.17 Total: -0.70 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -2.26 Total: -15.22 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 1.25 Total: -37.82 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: -1.85 SS G_CDS: -2.19 Total: -4.04 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -33.98 -10.99 -44.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408720213.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.519 kcal (2) G-P(sol) polarization free energy of solvation -33.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds