Wall clock time and date at job start Tue Mar 31 2020 05:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46926 * 2 1 4 4 S 1.81405 * 109.47157 * 240.00046 * 2 1 3 5 5 C 1.81396 * 102.99945 * 65.00034 * 4 2 1 6 6 C 1.50697 * 109.47097 * 179.97438 * 5 4 2 7 7 C 1.38233 * 120.00243 * 269.72597 * 6 5 4 8 8 C 1.38234 * 120.00217 * 179.76608 * 7 6 5 9 9 C 1.38234 * 119.99562 * 0.50615 * 8 7 6 10 10 C 1.38234 * 120.00274 * 359.74593 * 9 8 7 11 11 C 1.38234 * 119.99674 * 89.99821 * 6 5 4 12 12 C 1.50699 * 109.47079 * 120.00016 * 2 1 3 13 13 O 1.21301 * 120.00209 * 100.00385 * 12 2 1 14 14 N 1.34784 * 119.99911 * 279.99963 * 12 2 1 15 15 N 1.40103 * 119.99672 * 180.02562 * 14 12 2 16 16 C 1.28009 * 119.99685 * 180.02562 * 15 14 12 17 17 C 1.50699 * 119.99924 * 179.97438 * 16 15 14 18 18 C 1.52997 * 109.47078 * 0.02562 * 17 16 15 19 19 C 1.52997 * 109.47265 * 239.99907 * 17 16 15 20 20 C 1.53006 * 109.46866 * 119.99924 * 17 16 15 21 21 C 1.50699 * 109.46866 * 179.97438 * 20 17 16 22 22 H 1.08003 * 119.99962 * 359.97438 * 21 20 17 23 23 C 1.37874 * 120.00270 * 180.02562 * 21 20 17 24 24 N 1.31522 * 119.99834 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00496 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47574 * 89.99780 * 25 23 21 27 27 H 1.48500 * 109.47346 * 209.99892 * 25 23 21 28 28 H 1.48499 * 109.47067 * 329.99541 * 25 23 21 29 29 H 1.09000 * 109.47412 * 299.99763 * 1 2 3 30 30 H 1.09001 * 109.47052 * 60.00244 * 1 2 3 31 31 H 1.08998 * 109.46926 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47009 * 299.99874 * 5 4 2 33 33 H 1.09006 * 109.47395 * 60.00044 * 5 4 2 34 34 H 1.08005 * 119.99829 * 359.97438 * 7 6 5 35 35 H 1.07995 * 119.99926 * 180.23319 * 8 7 6 36 36 H 1.08005 * 119.99825 * 179.72890 * 9 8 7 37 37 H 1.08007 * 119.99618 * 179.97438 * 10 9 8 38 38 H 1.08003 * 120.00748 * 0.02562 * 11 6 5 39 39 H 0.96997 * 119.99899 * 0.02562 * 14 12 2 40 40 H 1.08001 * 120.00186 * 359.97438 * 16 15 14 41 41 H 1.09001 * 109.46832 * 179.97438 * 18 17 16 42 42 H 1.09002 * 109.47153 * 299.99793 * 18 17 16 43 43 H 1.08996 * 109.46952 * 59.99965 * 18 17 16 44 44 H 1.09000 * 109.47140 * 300.00252 * 19 17 16 45 45 H 1.09001 * 109.47230 * 59.99396 * 19 17 16 46 46 H 1.09001 * 109.47375 * 180.02562 * 19 17 16 47 47 H 1.08993 * 109.46955 * 300.00219 * 20 17 16 48 48 H 1.09000 * 109.47050 * 60.00048 * 20 17 16 49 49 H 0.96992 * 120.00032 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1347 -0.8551 -1.4812 5 6 1.5665 0.2153 -2.8309 6 6 1.9985 -0.3689 -4.1511 7 6 3.2168 -0.0132 -4.6989 8 6 3.6152 -0.5528 -5.9076 9 6 2.7906 -1.4400 -6.5736 10 6 1.5700 -1.7917 -6.0285 11 6 1.1739 -1.2561 -4.8172 12 6 2.0323 -0.7104 1.2305 13 8 2.4066 -1.8618 1.1558 14 7 2.0659 -0.0663 2.4140 15 7 2.5334 -0.7267 3.5578 16 6 2.5648 -0.1151 4.6819 17 6 3.0671 -0.8255 5.9124 18 6 3.4744 -2.2540 5.5459 19 6 1.9590 -0.8652 6.9665 20 6 4.2786 -0.0784 6.4737 21 6 4.7805 -0.7884 7.7045 22 1 4.2847 -1.6829 8.0519 23 6 5.8720 -0.2957 8.3878 24 7 6.4754 0.7938 7.9651 25 14 6.4946 -1.1762 9.9130 26 1 7.5091 -2.1875 9.5214 27 1 7.1099 -0.1901 10.8374 28 1 5.3599 -1.8508 10.5930 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.4792 0.2881 -2.8037 33 1 2.0002 1.2085 -2.7142 34 1 3.8590 0.6838 -4.1807 35 1 4.5687 -0.2777 -6.3336 36 1 3.1000 -1.8583 -7.5202 37 1 0.9256 -2.4847 -6.5492 38 1 0.2199 -1.5304 -4.3917 39 1 1.7663 0.8543 2.4738 40 1 2.2313 0.9099 4.7485 41 1 3.8382 -2.7677 6.4358 42 1 2.6116 -2.7866 5.1457 43 1 4.2640 -2.2254 4.7951 44 1 1.6692 0.1527 7.2275 45 1 1.0958 -1.3973 6.5666 46 1 2.3224 -1.3786 7.8567 47 1 5.0680 -0.0501 5.7227 48 1 3.9888 0.9395 6.7347 49 1 7.2434 1.1403 8.4456 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408720213.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:16 Heat of formation + Delta-G solvation = -5.052380 kcal Electronic energy + Delta-G solvation = -26437.619113 eV Core-core repulsion = 22683.587454 eV Total energy + Delta-G solvation = -3754.031659 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.88401 -40.08395 -39.11468 -36.75483 -34.78389 -34.31919 -33.72587 -31.93591 -31.79471 -28.99418 -28.00300 -27.95040 -26.27765 -25.49763 -23.50938 -23.47060 -22.46690 -21.75168 -19.90756 -18.43468 -18.33961 -18.23751 -17.71112 -17.10588 -16.58450 -16.46144 -16.21698 -16.09966 -15.59751 -15.48857 -15.26734 -14.96848 -14.53688 -14.37790 -14.22787 -13.98972 -13.92356 -13.78948 -13.56534 -13.26454 -13.00778 -12.92021 -12.77974 -12.71093 -12.69039 -12.58659 -12.31277 -12.06923 -12.04627 -11.91307 -11.70073 -11.31107 -11.17962 -11.10216 -10.92134 -10.76338 -10.48692 -9.89005 -9.83562 -9.61277 -8.76072 -8.12536 -6.19032 -0.10305 0.49615 0.70018 0.85195 1.44837 1.46135 1.49600 1.55654 1.58476 1.75544 2.47070 2.93839 3.22709 3.28873 3.67224 3.73667 3.79949 3.84282 3.87487 4.02386 4.14481 4.25664 4.28595 4.34065 4.39824 4.47433 4.57911 4.58764 4.62530 4.66253 4.73586 4.90141 5.00539 5.04728 5.09462 5.14674 5.14745 5.16206 5.41311 5.51048 5.52421 5.54481 5.56068 5.61557 5.61626 5.76903 5.90530 6.03910 6.08678 6.31857 6.47730 6.94367 7.38262 7.48199 8.99624 Molecular weight = 348.16amu Principal moments of inertia in cm(-1) A = 0.021248 B = 0.001617 C = 0.001560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.444576 B =17314.245035 C =17947.468744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.076 4.076 3 H 0.141 0.859 4 S -0.240 6.240 5 C -0.045 4.045 6 C -0.088 4.088 7 C -0.116 4.116 8 C -0.132 4.132 9 C -0.123 4.123 10 C -0.130 4.130 11 C -0.112 4.112 12 C 0.544 3.456 13 O -0.543 6.543 14 N -0.578 5.578 15 N -0.281 5.281 16 C 0.112 3.888 17 C -0.013 4.013 18 C -0.109 4.109 19 C -0.116 4.116 20 C 0.048 3.952 21 C -0.516 4.516 22 H 0.071 0.929 23 C 0.000 4.000 24 N -0.935 5.935 25 Si 0.955 3.045 26 H -0.282 1.282 27 H -0.287 1.287 28 H -0.259 1.259 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.059 0.941 32 H 0.112 0.888 33 H 0.106 0.894 34 H 0.130 0.870 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.134 0.866 39 H 0.401 0.599 40 H 0.133 0.867 41 H 0.056 0.944 42 H 0.049 0.951 43 H 0.026 0.974 44 H 0.062 0.938 45 H 0.059 0.941 46 H 0.062 0.938 47 H -0.019 1.019 48 H 0.008 0.992 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.277 3.714 -26.553 31.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.209 4.209 3 H 0.158 0.842 4 S -0.010 6.010 5 C -0.192 4.192 6 C -0.089 4.089 7 C -0.136 4.136 8 C -0.150 4.150 9 C -0.141 4.141 10 C -0.148 4.148 11 C -0.132 4.132 12 C 0.330 3.670 13 O -0.417 6.417 14 N -0.321 5.321 15 N -0.083 5.083 16 C -0.103 4.103 17 C -0.015 4.015 18 C -0.166 4.166 19 C -0.174 4.174 20 C 0.010 3.990 21 C -0.554 4.554 22 H 0.089 0.911 23 C -0.197 4.197 24 N -0.576 5.576 25 Si 0.781 3.219 26 H -0.208 1.208 27 H -0.213 1.213 28 H -0.183 1.183 29 H 0.105 0.895 30 H 0.118 0.882 31 H 0.079 0.921 32 H 0.130 0.870 33 H 0.124 0.876 34 H 0.148 0.852 35 H 0.157 0.843 36 H 0.159 0.841 37 H 0.159 0.841 38 H 0.152 0.848 39 H 0.242 0.758 40 H 0.150 0.850 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.045 0.955 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.081 0.919 47 H 0.000 1.000 48 H 0.026 0.974 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.180 1.274 -27.178 31.156 hybrid contribution 0.097 2.076 1.276 2.439 sum -15.083 3.350 -25.901 30.160 Atomic orbital electron populations 1.22041 0.88284 1.03976 1.05351 1.23287 1.02417 1.03392 0.91772 0.84166 1.88205 1.75566 1.37840 0.99372 1.22468 1.05169 1.00267 0.91272 1.19340 0.95820 0.99225 0.94552 1.21302 0.95627 1.00350 0.96288 1.21443 1.00618 0.97575 0.95318 1.21539 0.94416 0.97458 1.00736 1.21463 0.97238 1.00194 0.95915 1.21308 1.00288 0.96143 0.95463 1.20305 0.77168 0.86490 0.83030 1.90742 1.46673 1.19076 1.85256 1.46848 1.64047 1.15477 1.05754 1.74534 1.13432 1.25563 0.94725 1.26509 0.93108 0.98602 0.92048 1.19644 0.96745 0.95060 0.90095 1.21491 0.99727 0.95441 0.99991 1.21635 0.95776 1.02362 0.97635 1.18946 0.90888 0.94824 0.94328 1.21582 1.12789 1.10808 1.10200 0.91122 1.25854 0.97239 0.95796 1.00858 1.70091 1.22278 1.23491 1.41756 0.85588 0.78759 0.78137 0.79425 1.20799 1.21255 1.18272 0.89471 0.88200 0.92143 0.86964 0.87564 0.85238 0.84345 0.84054 0.84062 0.84780 0.75838 0.85022 0.92537 0.93159 0.95474 0.91892 0.92217 0.91903 1.00033 0.97412 0.93150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.08 71.98 0.65 -1.04 16 2 C -0.08 -1.39 3.18 29.85 0.09 -1.30 16 3 H 0.14 1.68 8.14 -2.39 -0.02 1.66 16 4 S -0.24 -5.41 20.38 -56.49 -1.15 -6.56 16 5 C -0.04 -0.59 5.77 71.24 0.41 -0.18 16 6 C -0.09 -1.38 5.14 -19.87 -0.10 -1.48 16 7 C -0.12 -1.82 9.70 22.27 0.22 -1.60 16 8 C -0.13 -1.85 10.05 22.27 0.22 -1.62 16 9 C -0.12 -1.58 10.05 22.27 0.22 -1.36 16 10 C -0.13 -1.73 10.05 22.27 0.22 -1.50 16 11 C -0.11 -1.65 9.70 22.27 0.22 -1.44 16 12 C 0.54 16.01 7.12 87.66 0.62 16.63 16 13 O -0.54 -22.17 16.38 -3.10 -0.05 -22.22 16 14 N -0.58 -15.89 6.25 -173.51 -1.08 -16.97 16 15 N -0.28 -10.01 9.70 -50.46 -0.49 -10.50 16 16 C 0.11 3.73 9.56 88.67 0.85 4.58 16 17 C -0.01 -0.49 0.75 -52.93 -0.04 -0.53 16 18 C -0.11 -4.45 7.45 71.98 0.54 -3.91 16 19 C -0.12 -3.83 8.20 71.98 0.59 -3.24 16 20 C 0.05 2.38 4.02 29.85 0.12 2.50 16 21 C -0.52 -27.38 7.65 25.60 0.20 -27.19 16 22 H 0.07 3.57 5.68 -2.91 -0.02 3.55 16 23 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 24 N -0.94 -55.47 13.29 21.45 0.28 -55.19 16 25 Si 0.96 43.44 29.54 68.60 2.03 45.46 16 26 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 27 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 28 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 29 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.10 0.67 6.92 -2.39 -0.02 0.65 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.11 1.00 7.09 -2.39 -0.02 0.98 16 33 H 0.11 1.06 8.08 -2.39 -0.02 1.04 16 34 H 0.13 1.77 8.06 -2.91 -0.02 1.75 16 35 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 36 H 0.14 1.17 8.06 -2.91 -0.02 1.15 16 37 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 38 H 0.13 1.59 8.06 -2.91 -0.02 1.57 16 39 H 0.40 7.31 8.63 -213.32 -1.84 5.47 16 40 H 0.13 3.46 8.00 -2.91 -0.02 3.44 16 41 H 0.06 2.34 6.62 -2.39 -0.02 2.32 16 42 H 0.05 1.90 8.06 -2.39 -0.02 1.88 16 43 H 0.03 1.19 8.06 -2.39 -0.02 1.18 16 44 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.06 2.24 6.62 -2.39 -0.02 2.23 16 47 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 48 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 49 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -77.00 419.13 4.12 -72.87 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -0.91 Total: 15.34 kcal Atomic # 6 Polarization: -27.74 SS G_CDS: 5.50 Total: -22.25 kcal Atomic # 7 Polarization: -81.37 SS G_CDS: -1.29 Total: -82.65 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.05 Total: -22.22 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: -5.41 SS G_CDS: -1.15 Total: -6.56 kcal Total: -77.00 4.12 -72.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408720213.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.819 kcal (2) G-P(sol) polarization free energy of solvation -76.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds