Wall clock time and date at job start Tue Mar 31 2020 06:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46980 * 2 1 4 4 N 1.46492 * 109.47094 * 179.97438 * 3 2 1 5 5 C 1.38988 * 124.29763 * 270.02399 * 4 3 2 6 6 C 1.39069 * 131.69848 * 359.97438 * 5 4 3 7 7 C 1.38018 * 120.11993 * 179.20259 * 6 5 4 8 8 C 1.38500 * 120.62765 * 0.69912 * 7 6 5 9 9 C 1.38029 * 120.08956 * 359.53731 * 8 7 6 10 10 C 1.39096 * 119.72364 * 0.02562 * 9 8 7 11 11 C 1.48040 * 133.25572 * 179.97438 * 10 9 8 12 12 C 1.36593 * 127.48748 * 0.02562 * 11 10 9 13 13 C 1.46439 * 120.00238 * 187.29227 * 12 11 10 14 14 C 1.40137 * 120.24133 * 41.60969 * 13 12 11 15 15 C 1.37676 * 119.87285 * 179.97438 * 14 13 12 16 16 C 1.38683 * 120.37868 * 359.96970 * 15 14 13 17 17 C 1.38055 * 120.49961 * 0.02853 * 16 15 14 18 18 C 1.38767 * 120.11043 * 0.27565 * 17 16 15 19 19 O 1.35473 * 120.18511 * 179.70067 * 18 17 16 20 20 C 1.34754 * 117.00267 * 5.75291 * 19 18 17 21 21 H 1.07998 * 120.00032 * 5.46204 * 20 19 18 22 22 C 1.38737 * 120.00168 * 185.45080 * 20 19 18 23 23 N 1.31498 * 119.99859 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 120.00169 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46950 * 60.00412 * 24 22 20 26 26 H 1.48498 * 109.47004 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46877 * 300.00198 * 24 22 20 28 28 C 1.34392 * 124.29640 * 90.02827 * 4 3 2 29 29 O 1.21757 * 126.01655 * 359.97102 * 28 4 3 30 30 H 1.08995 * 109.47388 * 299.99476 * 1 2 3 31 31 H 1.08995 * 109.47415 * 59.99877 * 1 2 3 32 32 H 1.09005 * 109.47219 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46644 * 239.99996 * 2 1 3 34 34 H 1.08998 * 109.46921 * 120.00013 * 2 1 3 35 35 H 1.09000 * 109.47029 * 59.99829 * 3 2 1 36 36 H 1.08995 * 109.47147 * 300.00287 * 3 2 1 37 37 H 1.07998 * 119.93719 * 359.97438 * 6 5 4 38 38 H 1.07997 * 119.68161 * 180.24466 * 7 6 5 39 39 H 1.08005 * 119.95199 * 179.56069 * 8 7 6 40 40 H 1.08000 * 120.13794 * 179.97438 * 9 8 7 41 41 H 1.08002 * 119.99941 * 7.28641 * 12 11 10 42 42 H 1.07998 * 120.06275 * 359.95606 * 14 13 12 43 43 H 1.08002 * 119.81196 * 180.02562 * 15 14 13 44 44 H 1.08004 * 119.75076 * 180.02562 * 16 15 14 45 45 H 1.08004 * 119.94578 * 179.97438 * 17 16 15 46 46 H 0.97004 * 119.99754 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.2876 1.4422 1.1492 6 6 3.9505 1.4423 2.4984 7 6 4.9407 1.4253 3.4597 8 6 6.2772 1.4226 3.0960 9 6 6.6314 1.4273 1.7620 10 6 5.6409 1.4353 0.7855 11 6 5.6754 1.4422 -0.6945 12 6 6.7784 1.4419 -1.5003 13 6 6.6282 1.6104 -2.9472 14 6 5.7214 2.5488 -3.4581 15 6 5.5868 2.7013 -4.8198 16 6 6.3441 1.9316 -5.6900 17 6 7.2421 1.0026 -5.2036 18 6 7.3897 0.8275 -3.8349 19 8 8.2660 -0.0879 -3.3560 20 6 9.0507 -0.7129 -4.2557 21 1 9.0270 -0.4136 -5.2931 22 6 9.8893 -1.7408 -3.8493 23 7 9.9180 -2.1054 -2.5862 24 14 10.9776 -2.6067 -5.0964 25 1 11.8956 -1.6208 -5.7214 26 1 11.7726 -3.6587 -4.4136 27 1 10.1303 -3.2285 -6.1456 28 6 4.2627 1.4429 -1.1093 29 8 3.8530 1.4428 -2.2559 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6766 1.9563 -0.8899 37 1 2.9119 1.4431 2.7944 38 1 4.6709 1.4215 4.5054 39 1 7.0432 1.4164 3.8574 40 1 7.6732 1.4256 1.4776 41 1 7.7612 1.3175 -1.0703 42 1 5.1292 3.1510 -2.7851 43 1 4.8879 3.4251 -5.2125 44 1 6.2306 2.0599 -6.7564 45 1 7.8270 0.4077 -5.8894 46 1 10.5040 -2.8243 -2.3022 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409110439.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:25 Heat of formation + Delta-G solvation = 19.953625 kcal Electronic energy + Delta-G solvation = -29966.609884 eV Core-core repulsion = 25980.499954 eV Total energy + Delta-G solvation = -3986.109930 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 349.146 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.30189 -39.13929 -38.03771 -36.60089 -35.89835 -34.57481 -33.19472 -32.43194 -30.98203 -29.67532 -29.08484 -27.91085 -26.90586 -25.45078 -24.14025 -22.38098 -21.95286 -21.67355 -21.03675 -20.60298 -18.92100 -18.08491 -17.24973 -16.76010 -16.38313 -15.69515 -15.45625 -15.07151 -14.99211 -14.60799 -14.52463 -14.12867 -13.93977 -13.80702 -13.66661 -13.44101 -13.43337 -13.12356 -12.72180 -12.56850 -12.33998 -12.26841 -12.15201 -11.80016 -11.76934 -11.60164 -11.39776 -11.00607 -10.95839 -10.88191 -10.75123 -10.70582 -10.52503 -10.17316 -9.95781 -9.63623 -9.41953 -8.95236 -8.56133 -7.92381 -7.51816 -7.07822 -6.59238 -4.15231 0.68615 1.44394 1.86472 2.42302 2.49508 2.90830 3.07017 3.08872 3.10807 3.62046 3.86189 4.01200 4.53554 4.55244 4.68109 4.82352 4.85453 4.95588 4.98243 5.05053 5.11224 5.11873 5.26336 5.29673 5.43866 5.47514 5.58411 5.61631 5.65492 5.72653 5.79830 5.83697 5.94847 5.95345 6.05365 6.11931 6.16260 6.29128 6.37717 6.55420 6.57180 6.66680 6.68919 6.79298 6.87771 6.97485 7.03443 7.22250 7.30759 7.33438 7.37954 7.76021 7.85305 8.36147 8.85652 9.52314 10.57418 Molecular weight = 349.15amu Principal moments of inertia in cm(-1) A = 0.010006 B = 0.003356 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.568251 B = 8341.610426 C = 9636.699792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.143 4.143 3 C 0.116 3.884 4 N -0.550 5.550 5 C 0.140 3.860 6 C -0.142 4.142 7 C -0.099 4.099 8 C -0.143 4.143 9 C -0.072 4.072 10 C -0.078 4.078 11 C -0.228 4.228 12 C 0.106 3.894 13 C -0.190 4.190 14 C 0.006 3.994 15 C -0.221 4.221 16 C -0.051 4.051 17 C -0.240 4.240 18 C 0.181 3.819 19 O -0.163 6.163 20 C -0.393 4.393 21 H 0.095 0.905 22 C 0.043 3.957 23 N -0.853 5.853 24 Si 0.942 3.058 25 H -0.268 1.268 26 H -0.277 1.277 27 H -0.269 1.269 28 C 0.557 3.443 29 O -0.496 6.496 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.119 0.881 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.128 0.872 41 H 0.138 0.862 42 H 0.111 0.889 43 H 0.107 0.893 44 H 0.109 0.891 45 H 0.130 0.870 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.102 7.053 8.801 15.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.182 4.182 3 C -0.005 4.005 4 N -0.271 5.271 5 C 0.043 3.957 6 C -0.163 4.163 7 C -0.117 4.117 8 C -0.162 4.162 9 C -0.090 4.090 10 C -0.081 4.081 11 C -0.231 4.231 12 C 0.087 3.913 13 C -0.191 4.191 14 C -0.012 4.012 15 C -0.240 4.240 16 C -0.070 4.070 17 C -0.259 4.259 18 C 0.125 3.875 19 O -0.064 6.064 20 C -0.469 4.469 21 H 0.112 0.888 22 C -0.163 4.163 23 N -0.486 5.486 24 Si 0.766 3.234 25 H -0.193 1.193 26 H -0.201 1.201 27 H -0.194 1.194 28 C 0.351 3.649 29 O -0.372 6.372 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.137 0.863 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.146 0.854 41 H 0.155 0.845 42 H 0.129 0.871 43 H 0.126 0.874 44 H 0.127 0.873 45 H 0.148 0.852 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.290 6.775 8.449 15.644 hybrid contribution 0.363 -0.651 -0.591 0.952 sum -10.926 6.123 7.858 14.786 Atomic orbital electron populations 1.21677 0.94824 1.02105 1.01862 1.21918 0.96293 0.96727 1.03219 1.21599 0.77691 0.97720 1.03520 1.45518 1.06292 1.69680 1.05598 1.18278 0.90027 0.99585 0.87815 1.20130 0.99682 1.07258 0.89232 1.20785 0.92481 0.99944 0.98524 1.20915 0.96123 1.03662 0.95535 1.20601 0.98686 0.98140 0.91614 1.18993 0.92402 1.04313 0.92435 1.20379 0.93203 1.17889 0.91644 1.22168 0.96668 0.80748 0.91750 1.17907 1.05603 1.04689 0.90924 1.20781 0.91199 0.94259 0.94950 1.20480 1.05073 1.05244 0.93211 1.20927 0.93817 0.93667 0.98545 1.21076 1.05300 1.04551 0.95014 1.19451 0.87709 0.88909 0.91477 1.83858 1.41685 1.44670 1.36195 1.21371 1.18028 1.16388 0.91119 0.88783 1.25338 0.97672 0.95991 0.97283 1.69994 1.36306 1.27364 1.14919 0.85756 0.79341 0.78987 0.79283 1.19309 1.20132 1.19355 1.18406 0.86903 0.75894 0.83665 1.90889 1.79023 1.49146 1.18188 0.92642 0.92407 0.92295 0.91151 0.91538 0.90150 0.89403 0.86325 0.85856 0.85778 0.85419 0.84481 0.87066 0.87443 0.87297 0.85234 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 37.16 0.37 -0.91 16 2 C -0.14 -1.64 6.26 -26.73 -0.17 -1.81 16 3 C 0.12 1.41 5.78 -4.05 -0.02 1.38 16 4 N -0.55 -8.60 2.73 -114.64 -0.31 -8.91 16 5 C 0.14 2.10 6.74 -83.60 -0.56 1.54 16 6 C -0.14 -1.71 9.79 -39.35 -0.39 -2.09 16 7 C -0.10 -1.07 10.01 -39.57 -0.40 -1.47 16 8 C -0.14 -1.68 10.04 -39.56 -0.40 -2.08 16 9 C -0.07 -1.02 10.09 -39.34 -0.40 -1.42 16 10 C -0.08 -1.29 6.30 -104.85 -0.66 -1.95 16 11 C -0.23 -4.31 6.02 -102.82 -0.62 -4.93 16 12 C 0.11 2.13 9.39 -36.88 -0.35 1.79 16 13 C -0.19 -4.14 5.35 -104.94 -0.56 -4.70 16 14 C 0.01 0.13 7.04 -39.07 -0.28 -0.15 16 15 C -0.22 -4.15 10.02 -39.62 -0.40 -4.55 16 16 C -0.05 -0.97 10.03 -39.48 -0.40 -1.36 16 17 C -0.24 -5.24 9.12 -39.45 -0.36 -5.60 16 18 C 0.18 4.34 6.67 -38.44 -0.26 4.08 16 19 O -0.16 -4.45 9.21 1.11 0.01 -4.44 16 20 C -0.39 -10.57 9.44 30.92 0.29 -10.28 16 21 H 0.09 2.33 5.30 -52.49 -0.28 2.06 16 22 C 0.04 1.14 5.50 -17.51 -0.10 1.04 16 23 N -0.85 -23.91 13.67 55.48 0.76 -23.15 16 24 Si 0.94 19.78 29.55 -169.99 -5.02 14.75 16 25 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 26 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 27 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 28 C 0.56 10.59 7.26 -12.78 -0.09 10.49 16 29 O -0.50 -10.50 13.90 5.14 0.07 -10.43 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.77 7.75 -51.93 -0.40 0.36 16 36 H 0.09 1.09 7.96 -51.93 -0.41 0.67 16 37 H 0.12 1.14 7.81 -52.49 -0.41 0.73 16 38 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 40 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 41 H 0.14 2.66 8.06 -52.49 -0.42 2.23 16 42 H 0.11 2.11 6.61 -52.49 -0.35 1.77 16 43 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 44 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 45 H 0.13 2.76 5.71 -52.48 -0.30 2.46 16 46 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 389.63 15.07 5.87 5.87 Total: -1.00 -31.25 389.63 -10.29 -41.54 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -5.94 Total: 7.74 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: -5.73 Total: -22.97 kcal Atomic # 7 Polarization: -32.51 SS G_CDS: 0.45 Total: -32.07 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: 0.08 Total: -14.87 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.25 -10.29 -41.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409110439.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.490 kcal (2) G-P(sol) polarization free energy of solvation -31.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds