Wall clock time and date at job start Tue Mar 31 2020 05:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47021 * 2 1 4 4 N 1.46500 * 109.47253 * 179.97438 * 3 2 1 5 5 C 1.32256 * 120.24276 * 269.74870 * 4 3 2 6 6 O 1.21712 * 122.52454 * 0.02562 * 5 4 3 7 7 C 1.46768 * 114.94613 * 179.82656 * 5 4 3 8 8 C 1.35816 * 127.96501 * 180.18133 * 7 5 4 9 9 C 1.46762 * 120.00455 * 352.31188 * 8 7 5 10 10 C 1.40114 * 120.10808 * 321.29340 * 9 8 7 11 11 C 1.37107 * 119.88814 * 179.69177 * 10 9 8 12 12 C 1.39192 * 120.10984 * 0.57924 * 11 10 9 13 13 O 1.35572 * 119.89093 * 179.74256 * 12 11 10 14 14 C 1.34775 * 116.99936 * 185.65270 * 13 12 11 15 15 H 1.08000 * 120.00190 * 354.89028 * 14 13 12 16 16 C 1.38699 * 120.00030 * 174.88439 * 14 13 12 17 17 N 1.31527 * 119.99555 * 0.02562 * 16 14 13 18 18 Si 1.86790 * 120.00268 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47265 * 90.00101 * 18 16 14 20 20 H 1.48503 * 109.47318 * 210.00368 * 18 16 14 21 21 H 1.48502 * 109.47229 * 330.00389 * 18 16 14 22 22 C 1.39190 * 120.22117 * 359.71222 * 12 11 10 23 23 C 1.37108 * 120.11401 * 359.97438 * 22 12 11 24 24 S 1.77481 * 104.06710 * 0.38647 * 7 5 4 25 25 C 1.33794 * 120.23803 * 90.02485 * 4 3 2 26 26 S 1.71208 * 126.55279 * 359.95989 * 25 4 3 27 27 H 1.09002 * 109.47000 * 60.00054 * 1 2 3 28 28 H 1.09005 * 109.46817 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47152 * 300.00022 * 1 2 3 30 30 H 1.09000 * 109.47152 * 239.99978 * 2 1 3 31 31 H 1.09000 * 109.47012 * 120.00486 * 2 1 3 32 32 H 1.09000 * 109.47624 * 300.00111 * 3 2 1 33 33 H 1.09000 * 109.47176 * 59.99993 * 3 2 1 34 34 H 1.08006 * 120.00116 * 172.30872 * 8 7 5 35 35 H 1.08001 * 120.05528 * 359.96856 * 10 9 8 36 36 H 1.08000 * 119.94494 * 180.31886 * 11 10 9 37 37 H 0.96997 * 119.99526 * 179.97438 * 17 16 14 38 38 H 1.07994 * 119.94707 * 180.02562 * 22 12 11 39 39 H 1.07994 * 120.05906 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1706 1.4477 1.1434 6 8 3.6132 1.4521 2.2254 7 6 5.6321 1.4431 1.0086 8 6 6.5625 1.4433 1.9981 9 6 6.1481 1.6186 3.3950 10 6 5.1233 2.5184 3.7166 11 6 4.7355 2.6739 5.0224 12 6 5.3662 1.9487 6.0292 13 8 4.9827 2.1098 7.3196 14 6 5.7079 1.4695 8.2579 15 1 6.4996 0.7969 7.9627 16 6 5.4375 1.6745 9.6028 17 7 4.4730 2.4934 9.9623 18 14 6.4421 0.7866 10.9034 19 1 7.6198 1.6137 11.2694 20 1 5.6031 0.5596 12.1075 21 1 6.9021 -0.5197 10.3672 22 6 6.3889 1.0582 5.7157 23 6 6.7797 0.8907 4.4122 24 16 5.9035 1.4434 -0.7453 25 6 4.1792 1.4429 -1.1550 26 16 3.5052 1.4423 -2.7288 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 7.6073 1.3145 1.7569 35 1 4.6366 3.0851 2.9366 36 1 3.9421 3.3634 5.2707 37 1 4.2837 2.6364 10.9028 38 1 6.8749 0.4975 6.5003 39 1 7.5736 0.1998 4.1700 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409340849.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:22 Heat of formation + Delta-G solvation = 22.045049 kcal Electronic energy + Delta-G solvation = -24884.900339 eV Core-core repulsion = 21205.411733 eV Total energy + Delta-G solvation = -3679.488606 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 349.059 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.69876 -39.39905 -37.68354 -36.72253 -34.55144 -33.42554 -32.53547 -30.59010 -29.11922 -27.99687 -26.70904 -25.75065 -23.87204 -22.30430 -21.99374 -21.23759 -19.88010 -19.05669 -18.34651 -17.86201 -17.08077 -16.51045 -16.01579 -15.66365 -15.25967 -15.03121 -14.72572 -14.53221 -14.15401 -13.99124 -13.89228 -13.45001 -13.03946 -12.86338 -12.65766 -12.46060 -12.37850 -12.12414 -12.04888 -11.79788 -11.57084 -11.51854 -11.36513 -11.19006 -11.00836 -10.90737 -10.69624 -10.64450 -10.16540 -9.68582 -9.23837 -9.05580 -8.43388 -8.19409 -8.04211 -7.24257 -6.84263 -4.34812 -0.52894 0.50377 0.72554 1.34913 1.55701 2.08820 2.16736 2.28419 2.69040 2.93205 2.94614 2.99261 3.67607 3.87976 4.29405 4.57062 4.62021 4.76508 4.84192 4.87472 4.92884 5.11963 5.17995 5.29030 5.36740 5.39600 5.49550 5.58542 5.64705 5.77213 5.81870 5.92537 6.01260 6.15791 6.32124 6.37306 6.62523 6.72927 6.97805 7.03309 7.11106 7.28097 7.49694 7.61694 8.59266 9.25543 10.31213 Molecular weight = 349.06amu Principal moments of inertia in cm(-1) A = 0.018722 B = 0.002438 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.246505 B =11482.492205 C =12502.444555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.135 4.135 3 C 0.087 3.913 4 N -0.507 5.507 5 C 0.535 3.465 6 O -0.441 6.441 7 C -0.329 4.329 8 C 0.146 3.854 9 C -0.229 4.229 10 C 0.016 3.984 11 C -0.203 4.203 12 C 0.177 3.823 13 O -0.150 6.150 14 C -0.388 4.388 15 H 0.101 0.899 16 C 0.042 3.958 17 N -0.841 5.841 18 Si 0.948 3.052 19 H -0.269 1.269 20 H -0.274 1.274 21 H -0.264 1.264 22 C -0.249 4.249 23 C -0.017 4.017 24 S 0.100 5.900 25 C 0.282 3.718 26 S -0.431 6.431 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.142 0.858 35 H 0.112 0.888 36 H 0.120 0.880 37 H 0.278 0.722 38 H 0.133 0.867 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.552 -3.001 -15.152 15.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C -0.036 4.036 4 N -0.225 5.225 5 C 0.323 3.677 6 O -0.314 6.314 7 C -0.446 4.446 8 C 0.121 3.879 9 C -0.232 4.232 10 C -0.003 4.003 11 C -0.223 4.223 12 C 0.119 3.881 13 O -0.049 6.049 14 C -0.463 4.463 15 H 0.119 0.881 16 C -0.166 4.166 17 N -0.472 5.472 18 Si 0.772 3.228 19 H -0.194 1.194 20 H -0.199 1.199 21 H -0.188 1.188 22 C -0.268 4.268 23 C -0.036 4.036 24 S 0.342 5.658 25 C -0.072 4.072 26 S -0.297 6.297 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.130 0.870 33 H 0.121 0.879 34 H 0.160 0.840 35 H 0.130 0.870 36 H 0.138 0.862 37 H 0.088 0.912 38 H 0.151 0.849 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.487 -2.765 -15.843 16.151 hybrid contribution -0.284 -0.502 2.179 2.254 sum 1.203 -3.267 -13.665 14.101 Atomic orbital electron populations 1.21640 0.93844 1.02474 1.02338 1.21777 0.97411 0.95021 1.03179 1.22364 0.74793 1.00250 1.06179 1.45455 1.11016 1.60387 1.05654 1.18082 0.88063 0.77904 0.83626 1.91014 1.72007 1.43800 1.24611 1.23501 0.95129 1.28861 0.97135 1.22000 0.96759 0.78533 0.90627 1.18214 1.06037 1.08584 0.90392 1.20604 0.90805 0.94073 0.94784 1.19960 1.05306 1.05737 0.91269 1.19661 0.91209 0.91690 0.85555 1.83894 1.48994 1.60869 1.11172 1.21604 1.15533 1.24405 0.84792 0.88148 1.25493 0.96999 0.96728 0.97412 1.70021 1.26966 1.31673 1.18580 0.85588 0.78922 0.79350 0.78981 1.19401 1.19858 1.18780 1.20911 1.03540 1.05533 0.96835 1.20741 0.95865 0.95374 0.91653 1.85820 1.00997 1.80154 0.98854 1.28337 0.98496 0.85135 0.95254 1.92902 1.76742 1.58352 1.01719 0.92055 0.91964 0.92211 0.90851 0.91310 0.87046 0.87868 0.84013 0.87003 0.86152 0.91215 0.84949 0.86670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.91 37.16 0.37 -0.87 16 2 C -0.14 -1.42 6.26 -26.73 -0.17 -1.58 16 3 C 0.09 0.98 5.11 -4.04 -0.02 0.95 16 4 N -0.51 -6.50 2.48 -117.64 -0.29 -6.79 16 5 C 0.54 7.63 6.97 -13.92 -0.10 7.54 16 6 O -0.44 -7.42 12.46 5.18 0.06 -7.36 16 7 C -0.33 -4.15 6.33 -37.00 -0.23 -4.38 16 8 C 0.15 1.75 9.86 -37.01 -0.37 1.39 16 9 C -0.23 -3.54 5.36 -105.04 -0.56 -4.10 16 10 C 0.02 0.28 6.90 -39.29 -0.27 0.01 16 11 C -0.20 -4.07 9.95 -39.64 -0.39 -4.46 16 12 C 0.18 3.91 6.66 -38.87 -0.26 3.65 16 13 O -0.15 -3.92 9.74 0.75 0.01 -3.91 16 14 C -0.39 -9.80 9.48 30.90 0.29 -9.50 16 15 H 0.10 2.29 5.18 -52.49 -0.27 2.02 16 16 C 0.04 1.04 5.49 -17.51 -0.10 0.94 16 17 N -0.84 -22.61 13.67 55.48 0.76 -21.85 16 18 Si 0.95 18.46 29.55 -169.99 -5.02 13.44 16 19 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 20 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 21 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 22 C -0.25 -4.78 9.12 -39.64 -0.36 -5.14 16 23 C -0.02 -0.28 9.77 -39.29 -0.38 -0.66 16 24 S 0.10 1.12 23.18 -107.50 -2.49 -1.37 16 25 C 0.28 3.61 7.58 53.62 0.41 4.01 16 26 S -0.43 -6.04 29.73 -107.50 -3.20 -9.24 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.11 1.17 7.08 -51.93 -0.37 0.81 16 33 H 0.10 1.16 7.50 -51.93 -0.39 0.77 16 34 H 0.14 1.18 8.06 -52.48 -0.42 0.75 16 35 H 0.11 1.83 6.25 -52.49 -0.33 1.51 16 36 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 37 H 0.28 6.79 8.31 -40.82 -0.34 6.45 16 38 H 0.13 2.49 5.62 -52.49 -0.29 2.19 16 39 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 361.70 15.07 5.45 5.45 Total: -1.00 -28.46 361.70 -11.03 -39.49 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -4.17 Total: 4.33 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -2.14 Total: -12.20 kcal Atomic # 7 Polarization: -29.11 SS G_CDS: 0.47 Total: -28.64 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.07 Total: -11.27 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.02 Total: 13.44 kcal Atomic # 16 Polarization: -4.92 SS G_CDS: -5.69 Total: -10.61 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.46 -11.03 -39.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409340849.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.538 kcal (2) G-P(sol) polarization free energy of solvation -28.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds