Wall clock time and date at job start Tue Mar 31 2020 05:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.37671 * 119.99756 * 101.27612 * 3 2 1 5 5 C 1.41729 * 120.00077 * 173.30865 * 4 3 2 6 6 C 1.37871 * 126.83040 * 330.02674 * 5 4 3 7 7 N 1.35841 * 109.46353 * 180.02562 * 6 5 4 8 8 C 1.36957 * 124.76313 * 180.26874 * 7 6 5 9 9 H 1.07998 * 120.00151 * 148.47471 * 8 7 6 10 10 C 1.38929 * 119.99973 * 328.46913 * 8 7 6 11 11 N 1.31372 * 119.99818 * 163.39685 * 10 8 7 12 12 Si 1.86803 * 120.00053 * 343.39146 * 10 8 7 13 13 H 1.48494 * 109.46870 * 89.24148 * 12 10 8 14 14 H 1.48496 * 109.47265 * 209.24506 * 12 10 8 15 15 H 1.48497 * 109.47050 * 329.24517 * 12 10 8 16 16 C 1.38425 * 110.46631 * 0.02562 * 7 6 5 17 17 C 1.39020 * 132.93977 * 180.02562 * 16 7 6 18 18 C 1.37933 * 119.95573 * 179.97438 * 17 16 7 19 19 C 1.38643 * 120.59901 * 359.97438 * 18 17 16 20 20 C 1.37941 * 120.25243 * 0.02562 * 19 18 17 21 21 C 1.39116 * 119.69407 * 359.96172 * 20 19 18 22 22 C 1.48012 * 120.00208 * 281.26747 * 3 2 1 23 23 C 1.39577 * 120.13407 * 115.00350 * 22 3 2 24 24 C 1.37946 * 119.88269 * 179.74603 * 23 22 3 25 25 C 1.38364 * 120.15370 * 0.55402 * 24 23 22 26 26 C 1.38467 * 120.27360 * 359.69614 * 25 24 23 27 27 Cl 1.73603 * 119.94258 * 180.02562 * 26 25 24 28 28 C 1.38094 * 120.11136 * 0.02562 * 26 25 24 29 29 H 1.08005 * 120.00213 * 353.29819 * 4 3 2 30 30 H 1.07995 * 125.26692 * 0.06356 * 6 5 4 31 31 H 0.97003 * 119.99824 * 180.02562 * 11 10 8 32 32 H 1.07998 * 120.02377 * 359.97438 * 17 16 7 33 33 H 1.07997 * 119.70021 * 179.97438 * 18 17 16 34 34 H 1.07994 * 119.86853 * 179.97438 * 19 18 17 35 35 H 1.08004 * 120.15430 * 179.97438 * 20 19 18 36 36 H 1.08000 * 120.05883 * 0.02562 * 23 22 3 37 37 H 1.07999 * 119.92038 * 180.25059 * 24 23 22 38 38 H 1.08005 * 119.86625 * 179.72130 * 25 24 23 39 39 H 1.07997 * 120.07641 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2562 0.2341 -1.1693 5 6 4.6662 0.3758 -1.1455 6 6 5.4298 0.8697 -0.1093 7 7 6.7411 0.8488 -0.4634 8 6 7.7725 1.2655 0.3356 9 1 8.7411 0.7944 0.2566 10 6 7.5727 2.2943 1.2476 11 7 8.4297 2.4805 2.2258 12 14 6.0857 3.4129 1.0829 13 1 4.9453 2.8346 1.8380 14 1 6.4123 4.7542 1.6299 15 1 5.7174 3.5389 -0.3501 16 6 6.8888 0.3420 -1.7430 17 6 7.9980 0.1172 -2.5504 18 6 7.8346 -0.4124 -3.8134 19 6 6.5705 -0.7252 -4.2893 20 6 5.4585 -0.5090 -3.5024 21 6 5.6102 0.0244 -2.2265 22 6 3.3082 -0.2495 1.2571 23 6 4.1010 -1.3908 1.3882 24 6 4.7928 -1.6161 2.5602 25 6 4.6934 -0.7195 3.6094 26 6 3.9047 0.4122 3.4881 27 17 3.7867 1.5317 4.8097 28 6 3.2119 0.6516 2.3178 29 1 2.7217 0.3091 -2.1048 30 1 5.0451 1.2186 0.8376 31 1 8.2900 3.1986 2.8628 32 1 8.9870 0.3571 -2.1889 33 1 8.6991 -0.5850 -4.4373 34 1 6.4561 -1.1390 -5.2803 35 1 4.4745 -0.7529 -3.8749 36 1 4.1762 -2.0939 0.5720 37 1 5.4095 -2.4969 2.6609 38 1 5.2335 -0.9028 4.5265 39 1 2.5972 1.5346 2.2237 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409369980.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:08 Heat of formation + Delta-G solvation = 119.124008 kcal Electronic energy + Delta-G solvation = -27235.620286 eV Core-core repulsion = 23520.572344 eV Total energy + Delta-G solvation = -3715.047942 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.072 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.86262 -39.13037 -36.74157 -36.55236 -36.06836 -34.55036 -33.18296 -31.47519 -30.52723 -29.61187 -29.23231 -27.96116 -25.55230 -23.55309 -22.39692 -22.03498 -21.78897 -20.87233 -19.17721 -18.01259 -17.62652 -16.44610 -15.94621 -15.77187 -15.23673 -15.13506 -14.83144 -14.46907 -14.11211 -13.68968 -13.51480 -13.48849 -13.38306 -13.08271 -13.03262 -12.95453 -12.70546 -12.27375 -12.08326 -11.98840 -11.59160 -11.39153 -11.29079 -11.21984 -11.15666 -10.91066 -10.71225 -10.58114 -10.41908 -10.37849 -9.81766 -9.32215 -8.76915 -8.53293 -8.26296 -7.67540 -7.13104 -6.86436 -4.69518 0.99152 1.45863 1.49252 1.82689 2.30433 2.34978 2.83382 2.95600 2.99938 3.09258 3.34980 3.66968 3.77161 3.93069 3.99348 4.37757 4.54721 4.61676 4.98076 5.10039 5.26994 5.30834 5.46146 5.49072 5.50657 5.61898 5.65722 5.81309 5.90131 5.97228 6.04556 6.15973 6.24398 6.37987 6.45647 6.49343 6.58103 6.63054 6.74056 6.76411 6.98540 7.02382 7.05551 7.14713 7.30980 7.42314 7.60940 7.89977 7.96514 8.46873 8.72615 9.92473 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.009211 B = 0.005749 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3039.276383 B = 4868.890076 C = 6635.323032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.279 3.721 3 C -0.151 4.151 4 C 0.097 3.903 5 C -0.252 4.252 6 C 0.061 3.939 7 N -0.262 5.262 8 C -0.350 4.350 9 H 0.126 0.874 10 C 0.082 3.918 11 N -0.814 5.814 12 Si 0.864 3.136 13 H -0.249 1.249 14 H -0.275 1.275 15 H -0.249 1.249 16 C 0.050 3.950 17 C -0.088 4.088 18 C -0.138 4.138 19 C -0.141 4.141 20 C -0.097 4.097 21 C -0.067 4.067 22 C 0.005 3.995 23 C -0.085 4.085 24 C -0.101 4.101 25 C -0.110 4.110 26 C -0.030 4.030 27 Cl -0.081 7.081 28 C -0.115 4.115 29 H 0.123 0.877 30 H 0.168 0.832 31 H 0.291 0.709 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.776 -4.630 -2.203 5.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.144 5.144 2 C -0.033 4.033 3 C -0.157 4.157 4 C 0.073 3.927 5 C -0.259 4.259 6 C -0.083 4.083 7 N 0.080 4.920 8 C -0.478 4.478 9 H 0.144 0.856 10 C -0.134 4.134 11 N -0.442 5.442 12 Si 0.687 3.313 13 H -0.174 1.174 14 H -0.201 1.201 15 H -0.172 1.172 16 C -0.055 4.055 17 C -0.108 4.108 18 C -0.158 4.158 19 C -0.160 4.160 20 C -0.115 4.115 21 C -0.070 4.070 22 C 0.003 3.997 23 C -0.104 4.104 24 C -0.119 4.119 25 C -0.129 4.129 26 C -0.057 4.057 27 Cl -0.052 7.052 28 C -0.134 4.134 29 H 0.141 0.859 30 H 0.185 0.815 31 H 0.102 0.898 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.067 -4.299 -1.676 6.151 hybrid contribution 0.091 0.976 0.353 1.042 sum -3.976 -3.323 -1.323 5.349 Atomic orbital electron populations 1.81167 1.12231 1.12713 1.08280 1.25685 0.92412 0.92251 0.92974 1.16368 0.83325 1.21504 0.94462 1.20725 0.91761 0.85041 0.95132 1.17612 0.91423 1.20856 0.95990 1.22742 0.83448 1.03034 0.99093 1.40262 1.05299 1.37870 1.08539 1.19518 0.93033 1.19606 1.15623 0.85606 1.25338 0.97985 0.96464 0.93567 1.69628 1.35150 1.29236 1.10162 0.86948 0.82140 0.80790 0.81391 1.17394 1.20101 1.17247 1.18451 0.95132 1.05811 0.86097 1.20128 0.96679 1.00517 0.93466 1.20597 0.97026 1.02735 0.95431 1.20738 0.92536 1.03361 0.99361 1.20260 0.98113 1.00687 0.92477 1.18861 0.91897 1.02527 0.93764 1.18178 0.96330 0.93744 0.91403 1.21326 0.95388 0.96253 0.97383 1.20989 0.98875 0.99352 0.92730 1.21035 0.98414 0.93257 1.00145 1.20738 1.01730 0.93166 0.90038 1.98347 1.97384 1.62034 1.47459 1.21208 1.00400 0.99975 0.91767 0.85949 0.81534 0.89834 0.86482 0.86722 0.86963 0.86889 0.85061 0.85119 0.85252 0.85362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -8.31 18.54 41.84 0.78 -7.53 16 2 C 0.28 4.55 15.32 -22.47 -0.34 4.21 16 3 C -0.15 -2.36 5.33 -104.17 -0.56 -2.92 16 4 C 0.10 1.50 9.71 -38.46 -0.37 1.12 16 5 C -0.25 -4.57 5.41 -104.81 -0.57 -5.13 16 6 C 0.06 1.23 6.20 -15.91 -0.10 1.13 16 7 N -0.26 -5.68 2.60 -59.15 -0.15 -5.84 16 8 C -0.35 -8.26 10.23 -15.01 -0.15 -8.42 16 9 H 0.13 3.09 8.06 -52.49 -0.42 2.67 16 10 C 0.08 1.94 5.44 -17.49 -0.10 1.85 16 11 N -0.81 -19.90 13.95 55.49 0.77 -19.13 16 12 Si 0.86 18.52 24.95 -169.99 -4.24 14.27 16 13 H -0.25 -5.08 6.21 56.52 0.35 -4.73 16 14 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 15 H -0.25 -5.50 7.06 56.52 0.40 -5.10 16 16 C 0.05 1.01 6.72 -83.81 -0.56 0.45 16 17 C -0.09 -1.58 9.92 -39.40 -0.39 -1.97 16 18 C -0.14 -2.08 10.02 -39.54 -0.40 -2.48 16 19 C -0.14 -2.03 10.04 -39.54 -0.40 -2.42 16 20 C -0.10 -1.50 10.09 -39.36 -0.40 -1.90 16 21 C -0.07 -1.22 6.33 -104.89 -0.66 -1.89 16 22 C 0.00 0.08 3.00 -104.91 -0.31 -0.23 16 23 C -0.09 -1.29 8.34 -39.19 -0.33 -1.62 16 24 C -0.10 -1.46 10.03 -39.64 -0.40 -1.85 16 25 C -0.11 -1.65 9.82 -39.45 -0.39 -2.04 16 26 C -0.03 -0.49 6.31 -39.55 -0.25 -0.74 16 27 Cl -0.08 -1.25 28.95 -51.86 -1.50 -2.76 16 28 C -0.11 -1.90 8.03 -39.16 -0.31 -2.22 16 29 H 0.12 1.58 8.06 -52.48 -0.42 1.16 16 30 H 0.17 3.43 2.80 -52.49 -0.15 3.28 16 31 H 0.29 6.62 8.31 -40.82 -0.34 6.28 16 32 H 0.12 2.01 8.06 -52.49 -0.42 1.59 16 33 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.11 1.29 8.06 -52.49 -0.42 0.86 16 35 H 0.11 1.47 8.06 -52.48 -0.42 1.04 16 36 H 0.13 1.83 8.06 -52.49 -0.42 1.40 16 37 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 38 H 0.13 1.72 8.06 -52.48 -0.42 1.30 16 39 H 0.13 2.07 8.06 -52.49 -0.42 1.64 16 LS Contribution 357.36 15.07 5.39 5.39 Total: -1.00 -25.07 357.36 -9.51 -34.58 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -3.56 Total: 8.08 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: -6.99 Total: -27.07 kcal Atomic # 7 Polarization: -33.89 SS G_CDS: 1.40 Total: -32.50 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -4.24 Total: 14.27 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -1.50 Total: -2.76 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -25.07 -9.51 -34.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409369980.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.707 kcal (2) G-P(sol) polarization free energy of solvation -25.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds