Wall clock time and date at job start Tue Mar 31 2020 05:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30636 * 1 3 3 Si 1.86799 * 120.00093 * 2 1 4 4 H 1.48493 * 109.46754 * 269.99660 * 3 2 1 5 5 H 1.48495 * 109.46932 * 29.99684 * 3 2 1 6 6 H 1.48500 * 109.47178 * 149.99902 * 3 2 1 7 7 C 1.40135 * 119.99687 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99966 * 180.02562 * 7 2 1 9 9 C 1.41762 * 120.00300 * 0.02562 * 7 2 1 10 10 O 1.21776 * 120.00111 * 359.97438 * 9 7 2 11 11 N 1.34780 * 120.00006 * 180.02562 * 9 7 2 12 12 C 1.39505 * 119.99946 * 185.73703 * 11 9 7 13 13 C 1.38951 * 120.11640 * 33.91676 * 12 11 9 14 14 C 1.38072 * 119.97509 * 179.97438 * 13 12 11 15 15 C 1.38430 * 120.20357 * 0.02562 * 14 13 12 16 16 C 1.38206 * 120.23156 * 359.97438 * 15 14 13 17 17 C 1.38599 * 120.02950 * 359.97438 * 16 15 14 18 18 O 1.35876 * 120.10273 * 179.74521 * 17 16 15 19 19 C 1.35881 * 117.99820 * 260.64230 * 18 17 16 20 20 C 1.38740 * 120.05823 * 355.02245 * 19 18 17 21 21 C 1.38243 * 119.93761 * 179.74584 * 20 19 18 22 22 Cl 1.73603 * 119.97264 * 180.27657 * 21 20 19 23 23 C 1.38411 * 120.05773 * 0.55381 * 21 20 19 24 24 C 1.38243 * 120.11495 * 359.70345 * 23 21 20 25 25 C 1.38247 * 120.05734 * 0.02562 * 24 23 21 26 26 Cl 1.73600 * 120.03012 * 180.02562 * 25 24 23 27 27 H 0.96996 * 119.99973 * 0.02562 * 1 2 3 28 28 H 0.96998 * 120.00225 * 5.73429 * 11 9 7 29 29 H 1.08006 * 120.01077 * 359.97438 * 13 12 11 30 30 H 1.08001 * 119.89373 * 180.02562 * 14 13 12 31 31 H 1.08003 * 119.87875 * 180.02562 * 15 14 13 32 32 H 1.08009 * 119.98334 * 180.02562 * 16 15 14 33 33 H 1.07998 * 120.02853 * 0.02562 * 20 19 18 34 34 H 1.08002 * 119.94336 * 179.71550 * 23 21 20 35 35 H 1.07990 * 119.97186 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.4879 2.0463 -1.4000 5 1 1.4378 2.6526 0.7000 6 1 3.5379 1.4401 0.7001 7 6 2.0070 -1.2136 0.0005 8 1 3.0870 -1.2137 0.0010 9 6 1.2982 -2.4413 0.0005 10 8 0.0804 -2.4414 0.0005 11 7 1.9721 -3.6086 0.0016 12 6 1.2798 -4.8137 -0.1192 13 6 0.1309 -4.8829 -0.8976 14 6 -0.5516 -6.0773 -1.0155 15 6 -0.0953 -7.2078 -0.3598 16 6 1.0466 -7.1487 0.4166 17 6 1.7398 -5.9549 0.5408 18 8 2.8596 -5.8938 1.3079 19 6 2.7451 -5.3907 2.5650 20 6 1.5360 -4.8633 2.9949 21 6 1.4208 -4.3569 4.2760 22 17 -0.0936 -3.7032 4.8173 23 6 2.5134 -4.3653 5.1257 24 6 3.7207 -4.8854 4.6979 25 6 3.8398 -5.3982 3.4196 26 17 5.3560 -6.0518 2.8833 27 1 -0.4850 0.8400 -0.0004 28 1 2.9383 -3.6107 0.0863 29 1 -0.2281 -4.0026 -1.4101 30 1 -1.4443 -6.1296 -1.6212 31 1 -0.6330 -8.1395 -0.4560 32 1 1.3993 -8.0333 0.9261 33 1 0.6844 -4.8525 2.3308 34 1 2.4226 -3.9650 6.1246 35 1 4.5716 -4.8912 5.3629 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000092177.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:36 Heat of formation + Delta-G solvation = -24.087694 kcal Electronic energy + Delta-G solvation = -25991.944480 eV Core-core repulsion = 22007.390328 eV Total energy + Delta-G solvation = -3984.554152 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 351.022 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.88566 -39.01458 -37.73077 -36.84340 -36.55806 -35.96599 -33.60694 -32.46953 -30.69593 -30.63824 -29.57780 -28.73230 -26.46484 -23.67921 -22.72078 -22.51174 -21.43631 -19.97129 -18.66726 -17.70806 -17.06398 -16.35049 -16.27974 -15.82768 -15.38233 -15.25667 -14.65448 -14.20998 -14.17887 -13.95151 -13.71135 -13.39683 -12.98679 -12.67136 -12.43313 -12.28736 -12.08925 -12.03477 -11.71160 -11.51012 -11.27995 -11.13345 -10.96212 -10.84566 -10.81146 -10.70660 -10.57786 -10.39023 -9.50131 -8.96899 -8.77829 -8.51180 -8.20380 -7.80857 -7.21464 -6.44443 -4.97106 0.96454 1.21601 1.45389 1.83539 2.05760 2.29145 3.01737 3.09683 3.13065 3.29266 3.47477 3.92595 4.11344 4.41812 4.47993 4.70262 4.99192 5.00914 5.22614 5.25728 5.38486 5.54623 5.61632 5.67674 5.82946 5.90019 5.95790 6.02357 6.18714 6.29679 6.50415 6.61240 6.78578 6.91491 7.14524 7.19040 7.57366 7.76331 7.94955 8.07549 8.74208 9.15625 10.29906 10.49219 Molecular weight = 351.02amu Principal moments of inertia in cm(-1) A = 0.007929 B = 0.004962 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3530.459571 B = 5641.778199 C = 6556.821375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.090 3.910 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.534 4.534 8 H 0.069 0.931 9 C 0.543 3.457 10 O -0.563 6.563 11 N -0.695 5.695 12 C 0.199 3.801 13 C -0.123 4.123 14 C -0.090 4.090 15 C -0.158 4.158 16 C -0.094 4.094 17 C -0.004 4.004 18 O -0.233 6.233 19 C 0.151 3.849 20 C -0.159 4.159 21 C 0.010 3.990 22 Cl -0.056 7.056 23 C -0.140 4.140 24 C -0.068 4.068 25 C -0.067 4.067 26 Cl -0.056 7.056 27 H 0.273 0.727 28 H 0.395 0.605 29 H 0.146 0.854 30 H 0.122 0.878 31 H 0.121 0.879 32 H 0.124 0.876 33 H 0.150 0.850 34 H 0.141 0.859 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.682 -10.797 6.911 13.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.134 4.134 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.569 4.569 8 H 0.088 0.912 9 C 0.353 3.647 10 O -0.447 6.447 11 N -0.337 5.337 12 C 0.098 3.902 13 C -0.144 4.144 14 C -0.109 4.109 15 C -0.178 4.178 16 C -0.113 4.113 17 C -0.050 4.050 18 O -0.144 6.144 19 C 0.105 3.895 20 C -0.179 4.179 21 C -0.017 4.017 22 Cl -0.026 7.026 23 C -0.159 4.159 24 C -0.087 4.087 25 C -0.094 4.094 26 Cl -0.027 7.027 27 H 0.084 0.916 28 H 0.229 0.771 29 H 0.163 0.837 30 H 0.140 0.860 31 H 0.139 0.861 32 H 0.142 0.858 33 H 0.168 0.832 34 H 0.159 0.841 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.837 -10.595 6.814 13.169 hybrid contribution 0.781 0.939 0.037 1.222 sum 4.618 -9.656 6.851 12.709 Atomic orbital electron populations 1.69996 1.07227 1.27967 1.31918 1.25730 0.94647 1.00620 0.92377 0.86311 0.80326 0.80803 0.79153 1.19419 1.20146 1.18611 1.20038 0.94396 0.89946 1.52501 0.91230 1.17052 0.87594 0.81836 0.78191 1.90669 1.13354 1.85812 1.54816 1.44333 1.09985 1.04143 1.75210 1.18305 0.93346 0.85959 0.92612 1.21327 0.95782 0.98703 0.98595 1.21128 0.99081 0.92286 0.98422 1.20778 0.97185 0.98701 1.01131 1.20887 0.94193 0.96427 0.99818 1.18413 0.92795 0.94738 0.99044 1.84513 1.31840 1.77086 1.20987 1.18809 0.92035 0.93691 0.84942 1.21235 0.98381 1.02098 0.96150 1.20740 0.88412 0.98405 0.94138 1.98394 1.30352 1.84249 1.89644 1.20874 0.91090 1.03315 1.00586 1.20745 0.97974 0.96704 0.93263 1.20154 0.87187 1.07579 0.94520 1.98358 1.29298 1.84637 1.90422 0.91585 0.77122 0.83672 0.86007 0.86093 0.85835 0.83203 0.84080 0.83591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.89 11.73 55.55 0.65 -20.24 16 2 C 0.09 2.36 5.50 -17.35 -0.10 2.26 16 3 Si 0.91 19.21 29.56 -169.99 -5.02 14.19 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.53 -14.28 9.31 -37.52 -0.35 -14.63 16 8 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 9 C 0.54 14.50 7.29 -14.91 -0.11 14.39 16 10 O -0.56 -16.70 12.62 5.12 0.06 -16.63 16 11 N -0.69 -15.43 5.09 -12.31 -0.06 -15.50 16 12 C 0.20 4.04 5.20 -83.59 -0.43 3.60 16 13 C -0.12 -2.46 8.65 -39.38 -0.34 -2.80 16 14 C -0.09 -1.45 10.04 -39.57 -0.40 -1.84 16 15 C -0.16 -2.26 10.04 -39.52 -0.40 -2.65 16 16 C -0.09 -1.44 9.98 -39.46 -0.39 -1.83 16 17 C 0.00 -0.07 4.45 -38.93 -0.17 -0.25 16 18 O -0.23 -4.04 9.00 -3.49 -0.03 -4.07 16 19 C 0.15 2.52 6.56 -39.16 -0.26 2.26 16 20 C -0.16 -2.82 8.80 -39.39 -0.35 -3.17 16 21 C 0.01 0.16 6.32 -39.52 -0.25 -0.09 16 22 Cl -0.06 -0.89 28.95 -51.86 -1.50 -2.39 16 23 C -0.14 -1.83 9.83 -39.52 -0.39 -2.22 16 24 C -0.07 -0.84 9.82 -39.58 -0.39 -1.23 16 25 C -0.07 -0.98 6.33 -39.34 -0.25 -1.23 16 26 Cl -0.06 -0.75 28.50 -51.86 -1.48 -2.23 16 27 H 0.27 6.96 8.29 -40.82 -0.34 6.62 16 28 H 0.40 8.17 8.51 -40.82 -0.35 7.82 16 29 H 0.15 3.31 6.47 -52.48 -0.34 2.97 16 30 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 31 H 0.12 1.35 8.06 -52.48 -0.42 0.92 16 32 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 33 H 0.15 3.01 6.23 -52.49 -0.33 2.69 16 34 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 342.53 15.07 5.16 5.16 Total: -1.00 -30.40 342.53 -9.46 -39.86 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -2.67 Total: 11.24 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -4.57 Total: -9.40 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: 0.59 Total: -35.73 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: 0.03 Total: -20.70 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.19 kcal Atomic # 17 Polarization: -1.64 SS G_CDS: -2.98 Total: -4.62 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.40 -9.46 -39.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000092177.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.772 kcal (2) G-P(sol) polarization free energy of solvation -30.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds