Wall clock time and date at job start Tue Mar 31 2020 05:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30636 * 1 3 3 Si 1.86799 * 120.00093 * 2 1 4 4 H 1.48493 * 109.46754 * 269.99660 * 3 2 1 5 5 H 1.48495 * 109.46932 * 29.99684 * 3 2 1 6 6 H 1.48500 * 109.47178 * 149.99902 * 3 2 1 7 7 C 1.40135 * 119.99687 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99966 * 180.02562 * 7 2 1 9 9 C 1.41762 * 120.00300 * 0.02562 * 7 2 1 10 10 O 1.21776 * 120.00111 * 359.97438 * 9 7 2 11 11 N 1.34780 * 120.00006 * 180.02562 * 9 7 2 12 12 C 1.39505 * 119.99946 * 185.73703 * 11 9 7 13 13 C 1.38951 * 120.11640 * 33.91676 * 12 11 9 14 14 C 1.38072 * 119.97509 * 179.97438 * 13 12 11 15 15 C 1.38430 * 120.20357 * 0.02562 * 14 13 12 16 16 C 1.38206 * 120.23156 * 359.97438 * 15 14 13 17 17 C 1.38599 * 120.02950 * 359.97438 * 16 15 14 18 18 O 1.35876 * 120.10273 * 179.74521 * 17 16 15 19 19 C 1.35881 * 117.99820 * 260.64230 * 18 17 16 20 20 C 1.38740 * 120.05823 * 355.02245 * 19 18 17 21 21 C 1.38243 * 119.93761 * 179.74584 * 20 19 18 22 22 Cl 1.73603 * 119.97264 * 180.27657 * 21 20 19 23 23 C 1.38411 * 120.05773 * 0.55381 * 21 20 19 24 24 C 1.38243 * 120.11495 * 359.70345 * 23 21 20 25 25 C 1.38247 * 120.05734 * 0.02562 * 24 23 21 26 26 Cl 1.73600 * 120.03012 * 180.02562 * 25 24 23 27 27 H 0.96996 * 119.99973 * 0.02562 * 1 2 3 28 28 H 0.96998 * 120.00225 * 5.73429 * 11 9 7 29 29 H 1.08006 * 120.01077 * 359.97438 * 13 12 11 30 30 H 1.08001 * 119.89373 * 180.02562 * 14 13 12 31 31 H 1.08003 * 119.87875 * 180.02562 * 15 14 13 32 32 H 1.08009 * 119.98334 * 180.02562 * 16 15 14 33 33 H 1.07998 * 120.02853 * 0.02562 * 20 19 18 34 34 H 1.08002 * 119.94336 * 179.71550 * 23 21 20 35 35 H 1.07990 * 119.97186 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.4879 2.0463 -1.4000 5 1 1.4378 2.6526 0.7000 6 1 3.5379 1.4401 0.7001 7 6 2.0070 -1.2136 0.0005 8 1 3.0870 -1.2137 0.0010 9 6 1.2982 -2.4413 0.0005 10 8 0.0804 -2.4414 0.0005 11 7 1.9721 -3.6086 0.0016 12 6 1.2798 -4.8137 -0.1192 13 6 0.1309 -4.8829 -0.8976 14 6 -0.5516 -6.0773 -1.0155 15 6 -0.0953 -7.2078 -0.3598 16 6 1.0466 -7.1487 0.4166 17 6 1.7398 -5.9549 0.5408 18 8 2.8596 -5.8938 1.3079 19 6 2.7451 -5.3907 2.5650 20 6 1.5360 -4.8633 2.9949 21 6 1.4208 -4.3569 4.2760 22 17 -0.0936 -3.7032 4.8173 23 6 2.5134 -4.3653 5.1257 24 6 3.7207 -4.8854 4.6979 25 6 3.8398 -5.3982 3.4196 26 17 5.3560 -6.0518 2.8833 27 1 -0.4850 0.8400 -0.0004 28 1 2.9383 -3.6107 0.0863 29 1 -0.2281 -4.0026 -1.4101 30 1 -1.4443 -6.1296 -1.6212 31 1 -0.6330 -8.1395 -0.4560 32 1 1.3993 -8.0333 0.9261 33 1 0.6844 -4.8525 2.3308 34 1 2.4226 -3.9650 6.1246 35 1 4.5716 -4.8912 5.3629 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000092177.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:35 Heat of formation + Delta-G solvation = -41.273717 kcal Electronic energy + Delta-G solvation = -25992.689722 eV Core-core repulsion = 22007.390328 eV Total energy + Delta-G solvation = -3985.299394 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 351.022 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.21796 -40.43438 -39.28856 -38.28521 -37.72958 -37.14482 -35.40577 -34.47486 -31.92586 -31.84959 -31.00517 -30.19032 -28.34782 -24.92958 -24.19570 -23.78886 -22.75990 -21.72253 -20.01713 -19.43249 -18.39518 -17.86370 -17.67036 -17.44508 -16.91528 -16.47242 -15.96656 -15.87406 -15.51387 -15.22314 -15.04017 -14.88551 -14.60436 -14.44394 -13.78363 -13.49029 -13.38403 -13.31096 -13.25530 -12.96585 -12.83155 -12.75933 -12.59441 -12.24111 -12.09045 -12.07300 -11.91498 -11.81665 -11.16291 -10.86663 -10.02834 -9.97743 -9.74136 -9.36966 -8.83123 -8.42246 -7.05650 -0.21735 0.02323 0.13792 0.44928 0.88056 1.12110 1.35639 1.35920 1.51730 2.00785 2.17013 2.30812 2.34456 2.80054 2.90112 3.55798 3.60994 3.74710 3.91684 3.94032 4.12818 4.15862 4.40513 4.45252 4.54137 4.58018 4.70525 4.89374 4.93956 5.03571 5.17339 5.29007 5.33463 5.40852 5.56754 5.78715 5.83382 6.05513 6.11771 6.48738 6.70595 7.27676 8.33267 8.52068 Molecular weight = 351.02amu Principal moments of inertia in cm(-1) A = 0.007929 B = 0.004962 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3530.459571 B = 5641.778199 C = 6556.821375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.038 3.962 3 Si 0.992 3.008 4 H -0.259 1.259 5 H -0.269 1.269 6 H -0.251 1.251 7 C -0.564 4.564 8 H 0.082 0.918 9 C 0.538 3.462 10 O -0.604 6.604 11 N -0.692 5.692 12 C 0.165 3.835 13 C -0.151 4.151 14 C -0.088 4.088 15 C -0.135 4.135 16 C -0.092 4.092 17 C 0.001 3.999 18 O -0.239 6.239 19 C 0.135 3.865 20 C -0.180 4.180 21 C -0.006 4.006 22 Cl -0.065 7.065 23 C -0.127 4.127 24 C -0.052 4.052 25 C -0.071 4.071 26 Cl -0.044 7.044 27 H 0.279 0.721 28 H 0.399 0.601 29 H 0.104 0.896 30 H 0.148 0.852 31 H 0.168 0.832 32 H 0.155 0.845 33 H 0.117 0.883 34 H 0.174 0.826 35 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.567 -12.129 8.451 16.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.181 4.181 3 Si 0.811 3.189 4 H -0.184 1.184 5 H -0.193 1.193 6 H -0.174 1.174 7 C -0.599 4.599 8 H 0.100 0.900 9 C 0.347 3.653 10 O -0.491 6.491 11 N -0.334 5.334 12 C 0.066 3.934 13 C -0.172 4.172 14 C -0.106 4.106 15 C -0.154 4.154 16 C -0.110 4.110 17 C -0.044 4.044 18 O -0.150 6.150 19 C 0.090 3.910 20 C -0.199 4.199 21 C -0.033 4.033 22 Cl -0.036 7.036 23 C -0.146 4.146 24 C -0.071 4.071 25 C -0.098 4.098 26 Cl -0.015 7.015 27 H 0.089 0.911 28 H 0.233 0.767 29 H 0.122 0.878 30 H 0.166 0.834 31 H 0.186 0.814 32 H 0.173 0.827 33 H 0.135 0.865 34 H 0.191 0.809 35 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 5.739 -11.992 8.349 15.699 hybrid contribution 0.205 1.151 -0.407 1.238 sum 5.944 -10.841 7.942 14.694 Atomic orbital electron populations 1.70136 1.09411 1.29444 1.33221 1.26886 0.95461 1.04713 0.91011 0.85087 0.78936 0.75156 0.79691 1.18352 1.19312 1.17398 1.20513 0.95185 0.90849 1.53361 0.90017 1.17246 0.87228 0.83230 0.77549 1.90623 1.15026 1.86900 1.56555 1.43791 1.09893 1.04107 1.75631 1.18502 0.94222 0.86059 0.94631 1.21162 0.96967 0.99074 0.99991 1.21417 0.99364 0.91338 0.98513 1.21277 0.96287 0.99493 0.98371 1.21323 0.93915 0.96329 0.99451 1.18554 0.92782 0.94577 0.98491 1.84463 1.31690 1.77392 1.21463 1.18934 0.92545 0.94677 0.84886 1.21019 0.98022 1.04234 0.96664 1.20966 0.89064 0.99045 0.94244 1.98385 1.31267 1.84421 1.89552 1.21271 0.90071 1.01939 1.01341 1.21234 0.98799 0.94383 0.92671 1.20397 0.87056 1.07407 0.94955 1.98363 1.28169 1.84441 1.90485 0.91051 0.76698 0.87832 0.83442 0.81436 0.82716 0.86507 0.80859 0.79532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -46.71 11.73 21.85 0.26 -46.45 16 2 C 0.04 2.07 5.50 85.33 0.47 2.54 16 3 Si 0.99 39.88 29.56 68.60 2.03 41.91 16 4 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 5 H -0.27 -10.34 7.11 99.48 0.71 -9.64 16 6 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 7 C -0.56 -31.48 9.31 23.60 0.22 -31.26 16 8 H 0.08 4.17 7.85 -2.91 -0.02 4.15 16 9 C 0.54 30.62 7.29 85.11 0.62 31.24 16 10 O -0.60 -38.62 12.62 -4.59 -0.06 -38.68 16 11 N -0.69 -32.74 5.09 -311.05 -1.58 -34.32 16 12 C 0.17 7.05 5.20 38.43 0.20 7.25 16 13 C -0.15 -6.41 8.65 22.40 0.19 -6.22 16 14 C -0.09 -2.79 10.04 22.28 0.22 -2.56 16 15 C -0.14 -3.50 10.04 22.31 0.22 -3.28 16 16 C -0.09 -2.61 9.98 22.35 0.22 -2.39 16 17 C 0.00 0.05 4.45 22.69 0.10 0.15 16 18 O -0.24 -8.24 9.00 -35.39 -0.32 -8.56 16 19 C 0.13 4.47 6.56 22.54 0.15 4.61 16 20 C -0.18 -6.51 8.80 22.39 0.20 -6.32 16 21 C -0.01 -0.20 6.32 22.31 0.14 -0.06 16 22 Cl -0.07 -2.13 28.95 -2.72 -0.08 -2.21 16 23 C -0.13 -3.03 9.83 22.31 0.22 -2.81 16 24 C -0.05 -1.14 9.82 22.27 0.22 -0.92 16 25 C -0.07 -1.93 6.33 22.43 0.14 -1.79 16 26 Cl -0.04 -1.07 28.50 -2.72 -0.08 -1.15 16 27 H 0.28 14.83 8.29 -92.71 -0.77 14.06 16 28 H 0.40 17.48 8.51 -92.71 -0.79 16.70 16 29 H 0.10 5.23 6.47 -2.91 -0.02 5.22 16 30 H 0.15 3.82 8.06 -2.91 -0.02 3.79 16 31 H 0.17 2.86 8.06 -2.91 -0.02 2.84 16 32 H 0.16 3.47 8.06 -2.91 -0.02 3.44 16 33 H 0.12 5.01 6.23 -2.91 -0.02 4.99 16 34 H 0.17 2.97 8.06 -2.91 -0.02 2.94 16 35 H 0.19 2.52 8.06 -2.92 -0.02 2.49 16 Total: -1.00 -72.36 342.53 4.10 -68.27 By element: Atomic # 1 Polarization: 32.59 SS G_CDS: 0.39 Total: 32.98 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: 3.54 Total: -11.79 kcal Atomic # 7 Polarization: -79.45 SS G_CDS: -1.33 Total: -80.78 kcal Atomic # 8 Polarization: -46.86 SS G_CDS: -0.38 Total: -47.24 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.91 kcal Atomic # 17 Polarization: -3.19 SS G_CDS: -0.16 Total: -3.35 kcal Total: -72.36 4.10 -68.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000092177.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.993 kcal (2) G-P(sol) polarization free energy of solvation -72.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds