Wall clock time and date at job start Tue Mar 31 2020 05:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.46882 * 126.89347 * 306.31184 * 3 2 1 5 5 C 1.41030 * 126.33274 * 359.97438 * 4 3 2 6 6 H 1.07997 * 120.00320 * 359.97438 * 5 4 3 7 7 C 1.40130 * 120.00164 * 179.97438 * 5 4 3 8 8 N 1.30721 * 119.99654 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00158 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47297 * 90.00160 * 9 7 5 11 11 H 1.48501 * 109.47048 * 210.00065 * 9 7 5 12 12 H 1.48503 * 109.47388 * 330.00162 * 9 7 5 13 13 N 1.32847 * 107.33594 * 180.02562 * 4 3 2 14 14 N 1.39940 * 109.60131 * 359.97438 * 13 4 3 15 15 C 1.36892 * 109.33499 * 0.02562 * 14 13 4 16 16 N 1.33654 * 120.78138 * 179.97438 * 15 14 13 17 17 C 1.31395 * 120.92969 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.95665 * 179.97438 * 17 16 15 19 19 F 1.39892 * 109.46957 * 4.99912 * 18 17 16 20 20 F 1.39910 * 109.46925 * 124.99956 * 18 17 16 21 21 F 1.39905 * 109.47227 * 244.99655 * 18 17 16 22 22 C 1.40103 * 120.08868 * 0.03138 * 17 16 15 23 23 C 1.35652 * 119.40938 * 359.94923 * 22 17 16 24 24 C 1.50705 * 120.36251 * 180.02562 * 23 22 17 25 25 F 1.39901 * 109.46778 * 270.02122 * 24 23 22 26 26 F 1.39898 * 109.46636 * 30.01597 * 24 23 22 27 27 F 1.39891 * 109.47372 * 150.01811 * 24 23 22 28 28 H 0.97006 * 119.99758 * 179.97438 * 8 7 5 29 29 H 1.07998 * 120.29614 * 179.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.4500 -0.6946 0.9466 5 6 3.0434 -1.4940 2.0350 6 1 1.9922 -1.6401 2.2346 7 6 4.0034 -2.0987 2.8574 8 7 5.2758 -1.9214 2.6160 9 14 3.4648 -3.1581 4.2985 10 1 3.3219 -4.5668 3.8512 11 1 4.4831 -3.0820 5.3767 12 1 2.1610 -2.6677 4.8135 13 7 4.7017 -0.4302 0.5886 14 7 4.7024 0.3983 -0.5392 15 6 3.4110 0.6666 -0.9053 16 7 3.1464 1.4426 -1.9609 17 6 4.1175 1.9669 -2.6739 18 6 3.7941 2.8383 -3.8602 19 9 2.4107 3.0331 -3.9323 20 9 4.4325 4.0751 -3.7182 21 9 4.2391 2.2156 -5.0314 22 6 5.4532 1.7161 -2.3336 23 6 5.7316 0.9301 -1.2636 24 6 7.1607 0.6466 -0.8780 25 9 7.6029 -0.5038 -1.5400 26 9 7.9655 1.7319 -1.2408 27 9 7.2401 0.4488 0.5046 28 1 5.9404 -2.3398 3.1856 29 1 6.2540 2.1451 -2.9176 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000169607.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:20 Heat of formation + Delta-G solvation = -157.075289 kcal Electronic energy + Delta-G solvation = -30796.197830 eV Core-core repulsion = 25278.065426 eV Total energy + Delta-G solvation = -5518.132404 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 350.030 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.21294 -50.07576 -47.75369 -47.66100 -47.64135 -47.40222 -41.69340 -37.68968 -35.59927 -34.51763 -33.89704 -31.20667 -29.45492 -27.72121 -26.72140 -26.23323 -23.17437 -22.48102 -21.27837 -19.49747 -19.05298 -18.62540 -18.44728 -18.27671 -17.98637 -17.88587 -16.53625 -16.31646 -15.73183 -15.61632 -15.40766 -14.59657 -14.51095 -14.43270 -14.26555 -14.11701 -14.07829 -13.95135 -13.80855 -13.79693 -13.58742 -13.53165 -13.36934 -12.80782 -12.74410 -12.37559 -12.33986 -12.24035 -12.02013 -11.63419 -11.57770 -11.34085 -10.90258 -10.61923 -10.51703 -9.98692 -9.32122 -8.78402 -7.49379 -7.25213 -5.26451 0.15204 0.78055 2.08019 2.31115 2.63151 2.68006 2.85104 2.90016 3.02176 3.34181 3.36322 3.47415 3.50148 3.57970 3.86382 4.19253 4.19438 4.29077 4.40336 4.46118 4.59559 4.82043 4.94233 5.15715 5.27877 5.80907 5.90241 6.24438 6.53884 6.78412 7.49699 7.59903 7.83319 8.12242 8.44316 8.61659 9.66259 Molecular weight = 350.03amu Principal moments of inertia in cm(-1) A = 0.011646 B = 0.004710 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.589983 B = 5942.936443 C = 8007.369352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.326 3.674 3 C -0.213 4.213 4 C 0.255 3.745 5 C -0.376 4.376 6 H 0.105 0.895 7 C 0.062 3.938 8 N -0.719 5.719 9 Si 0.929 3.071 10 H -0.262 1.262 11 H -0.270 1.270 12 H -0.255 1.255 13 N -0.296 5.296 14 N -0.259 5.259 15 C 0.291 3.709 16 N -0.416 5.416 17 C 0.094 3.906 18 C 0.533 3.467 19 F -0.158 7.158 20 F -0.167 7.167 21 F -0.167 7.167 22 C -0.184 4.184 23 C 0.103 3.897 24 C 0.526 3.474 25 F -0.165 7.165 26 F -0.169 7.169 27 F -0.139 7.139 28 H 0.293 0.707 29 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.895 4.808 -6.420 10.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C 0.014 3.986 3 C -0.232 4.232 4 C 0.115 3.885 5 C -0.411 4.411 6 H 0.123 0.877 7 C -0.166 4.166 8 N -0.340 5.340 9 Si 0.751 3.249 10 H -0.187 1.187 11 H -0.195 1.195 12 H -0.178 1.178 13 N -0.134 5.134 14 N -0.024 5.024 15 C 0.063 3.937 16 N -0.130 5.130 17 C -0.069 4.069 18 C 0.477 3.523 19 F -0.139 7.139 20 F -0.149 7.149 21 F -0.149 7.149 22 C -0.210 4.210 23 C -0.025 4.025 24 C 0.470 3.530 25 F -0.146 7.146 26 F -0.150 7.150 27 F -0.120 7.120 28 H 0.104 0.896 29 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 5.543 4.525 -6.024 9.353 hybrid contribution 0.585 -0.275 0.339 0.730 sum 6.128 4.250 -5.685 9.377 Atomic orbital electron populations 1.81095 1.11551 1.12209 1.10512 1.24029 0.90690 0.91825 0.92075 1.16242 0.85189 1.17059 1.04701 1.20398 0.86245 0.90544 0.91286 1.19200 0.95690 1.21137 1.05111 0.87667 1.26209 0.94394 0.96484 0.99517 1.69777 1.01368 1.29701 1.33150 0.85921 0.80138 0.79910 0.78943 1.18682 1.19482 1.17832 1.79687 1.17475 1.17925 0.98323 1.47536 1.03827 1.30191 1.20887 1.19744 0.84270 0.96814 0.92916 1.67515 1.33839 1.07708 1.03904 1.21015 0.90186 0.99290 0.96448 1.17544 0.75158 0.78108 0.81478 1.93260 1.29175 1.95088 1.96388 1.93242 1.81921 1.43947 1.95741 1.93245 1.89260 1.82444 1.49917 1.20641 0.97858 1.03501 0.98975 1.20045 0.88170 0.99579 0.94696 1.17512 0.84120 0.74688 0.76665 1.93263 1.90319 1.50203 1.80811 1.93216 1.75027 1.55017 1.91744 1.93399 1.96347 1.94526 1.27686 0.89577 0.81039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.80 18.54 41.83 0.78 -10.03 15 2 C 0.33 7.32 15.71 -22.47 -0.35 6.97 15 3 C -0.21 -4.80 6.25 -103.63 -0.65 -5.45 15 4 C 0.26 6.05 6.92 -82.87 -0.57 5.47 15 5 C -0.38 -8.61 9.26 -37.81 -0.35 -8.96 15 6 H 0.11 2.29 7.85 -52.49 -0.41 1.88 15 7 C 0.06 1.33 5.50 -17.31 -0.10 1.23 15 8 N -0.72 -16.20 11.95 55.56 0.66 -15.54 15 9 Si 0.93 16.05 29.56 -169.99 -5.02 11.03 15 10 H -0.26 -4.50 7.11 56.52 0.40 -4.10 15 11 H -0.27 -4.57 7.11 56.52 0.40 -4.16 15 12 H -0.25 -4.40 7.11 56.52 0.40 -4.00 15 13 N -0.30 -6.96 9.52 33.30 0.32 -6.65 15 14 N -0.26 -5.39 3.81 -8.17 -0.03 -5.42 15 15 C 0.29 6.16 7.84 -155.44 -1.22 4.94 15 16 N -0.42 -8.00 9.87 -8.18 -0.08 -8.08 15 17 C 0.09 1.49 6.30 -82.08 -0.52 0.98 15 18 C 0.53 7.19 3.33 36.01 0.12 7.31 15 19 F -0.16 -2.36 16.87 2.25 0.04 -2.32 15 20 F -0.17 -2.04 17.18 2.25 0.04 -2.00 15 21 F -0.17 -2.09 17.29 2.25 0.04 -2.05 15 22 C -0.18 -2.63 8.97 -39.81 -0.36 -2.99 15 23 C 0.10 1.77 6.35 -81.38 -0.52 1.25 15 24 C 0.53 8.35 3.41 36.01 0.12 8.47 15 25 F -0.16 -2.60 17.30 2.25 0.04 -2.56 15 26 F -0.17 -2.22 16.47 2.25 0.04 -2.19 15 27 F -0.14 -2.58 16.00 2.25 0.04 -2.55 15 28 H 0.29 5.92 8.29 -40.82 -0.34 5.59 15 29 H 0.17 1.78 7.60 -52.49 -0.40 1.38 15 LS Contribution 309.26 15.07 4.66 4.66 Total: -1.00 -25.04 309.26 -2.82 -27.87 By element: Atomic # 1 Polarization: -3.47 SS G_CDS: 0.06 Total: -3.42 kcal Atomic # 6 Polarization: 23.62 SS G_CDS: -4.39 Total: 19.24 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: 1.64 Total: -45.71 kcal Atomic # 9 Polarization: -13.89 SS G_CDS: 0.23 Total: -13.67 kcal Atomic # 14 Polarization: 16.05 SS G_CDS: -5.02 Total: 11.03 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -25.04 -2.82 -27.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000169607.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.208 kcal (2) G-P(sol) polarization free energy of solvation -25.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds