Wall clock time and date at job start Tue Mar 31 2020 05:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.46882 * 126.89347 * 306.31184 * 3 2 1 5 5 C 1.41030 * 126.33274 * 359.97438 * 4 3 2 6 6 H 1.07997 * 120.00320 * 359.97438 * 5 4 3 7 7 C 1.40130 * 120.00164 * 179.97438 * 5 4 3 8 8 N 1.30721 * 119.99654 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00158 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47297 * 90.00160 * 9 7 5 11 11 H 1.48501 * 109.47048 * 210.00065 * 9 7 5 12 12 H 1.48503 * 109.47388 * 330.00162 * 9 7 5 13 13 N 1.32847 * 107.33594 * 180.02562 * 4 3 2 14 14 N 1.39940 * 109.60131 * 359.97438 * 13 4 3 15 15 C 1.36892 * 109.33499 * 0.02562 * 14 13 4 16 16 N 1.33654 * 120.78138 * 179.97438 * 15 14 13 17 17 C 1.31395 * 120.92969 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.95665 * 179.97438 * 17 16 15 19 19 F 1.39892 * 109.46957 * 4.99912 * 18 17 16 20 20 F 1.39910 * 109.46925 * 124.99956 * 18 17 16 21 21 F 1.39905 * 109.47227 * 244.99655 * 18 17 16 22 22 C 1.40103 * 120.08868 * 0.03138 * 17 16 15 23 23 C 1.35652 * 119.40938 * 359.94923 * 22 17 16 24 24 C 1.50705 * 120.36251 * 180.02562 * 23 22 17 25 25 F 1.39901 * 109.46778 * 270.02122 * 24 23 22 26 26 F 1.39898 * 109.46636 * 30.01597 * 24 23 22 27 27 F 1.39891 * 109.47372 * 150.01811 * 24 23 22 28 28 H 0.97006 * 119.99758 * 179.97438 * 8 7 5 29 29 H 1.07998 * 120.29614 * 179.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.4500 -0.6946 0.9466 5 6 3.0434 -1.4940 2.0350 6 1 1.9922 -1.6401 2.2346 7 6 4.0034 -2.0987 2.8574 8 7 5.2758 -1.9214 2.6160 9 14 3.4648 -3.1581 4.2985 10 1 3.3219 -4.5668 3.8512 11 1 4.4831 -3.0820 5.3767 12 1 2.1610 -2.6677 4.8135 13 7 4.7017 -0.4302 0.5886 14 7 4.7024 0.3983 -0.5392 15 6 3.4110 0.6666 -0.9053 16 7 3.1464 1.4426 -1.9609 17 6 4.1175 1.9669 -2.6739 18 6 3.7941 2.8383 -3.8602 19 9 2.4107 3.0331 -3.9323 20 9 4.4325 4.0751 -3.7182 21 9 4.2391 2.2156 -5.0314 22 6 5.4532 1.7161 -2.3336 23 6 5.7316 0.9301 -1.2636 24 6 7.1607 0.6466 -0.8780 25 9 7.6029 -0.5038 -1.5400 26 9 7.9655 1.7319 -1.2408 27 9 7.2401 0.4488 0.5046 28 1 5.9404 -2.3398 3.1856 29 1 6.2540 2.1451 -2.9176 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000169607.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:19 Heat of formation + Delta-G solvation = -168.907662 kcal Electronic energy + Delta-G solvation = -30796.710920 eV Core-core repulsion = 25278.065426 eV Total energy + Delta-G solvation = -5518.645494 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 350.030 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.36436 -51.32264 -48.88824 -48.81904 -48.78987 -48.76557 -43.23526 -39.22615 -37.31496 -36.08185 -35.43408 -32.73667 -30.98729 -29.24958 -28.24007 -27.54996 -24.69044 -23.80841 -22.89178 -20.90128 -20.36149 -19.78883 -19.68889 -19.66731 -19.34036 -19.20713 -18.04068 -17.73127 -17.23497 -17.15375 -16.90770 -15.76126 -15.67977 -15.60962 -15.54872 -15.41761 -15.20807 -15.19630 -14.92375 -14.91264 -14.90483 -14.89104 -14.80107 -14.43286 -14.28021 -13.94944 -13.89370 -13.65712 -13.56107 -13.16350 -13.08364 -12.95404 -12.38788 -12.07495 -11.95690 -11.48558 -10.91945 -10.39940 -9.11339 -8.82285 -6.96814 -1.28504 -0.65070 0.67556 1.02647 1.18766 1.20953 1.42629 1.51941 1.57266 1.76736 1.81111 2.12247 2.16908 2.19601 2.51011 2.53203 2.91183 3.05086 3.10148 3.14249 3.17194 3.18750 3.44387 3.64124 4.02057 4.28393 4.35741 4.64822 4.95481 5.24557 5.86822 6.05384 6.19549 6.48939 6.71257 6.96920 8.12196 Molecular weight = 350.03amu Principal moments of inertia in cm(-1) A = 0.011646 B = 0.004710 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.589983 B = 5942.936443 C = 8007.369352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C 0.332 3.668 3 C -0.248 4.248 4 C 0.242 3.758 5 C -0.411 4.411 6 H 0.103 0.897 7 C 0.031 3.969 8 N -0.753 5.753 9 Si 0.996 3.004 10 H -0.258 1.258 11 H -0.261 1.261 12 H -0.256 1.256 13 N -0.328 5.328 14 N -0.272 5.272 15 C 0.296 3.704 16 N -0.435 5.435 17 C 0.107 3.893 18 C 0.545 3.455 19 F -0.165 7.165 20 F -0.152 7.152 21 F -0.154 7.154 22 C -0.151 4.151 23 C 0.093 3.907 24 C 0.534 3.466 25 F -0.163 7.163 26 F -0.146 7.146 27 F -0.157 7.157 28 H 0.299 0.701 29 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.313 5.917 -7.927 12.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.172 5.172 2 C 0.021 3.979 3 C -0.268 4.268 4 C 0.101 3.899 5 C -0.446 4.446 6 H 0.121 0.879 7 C -0.194 4.194 8 N -0.375 5.375 9 Si 0.815 3.185 10 H -0.183 1.183 11 H -0.185 1.185 12 H -0.180 1.180 13 N -0.165 5.165 14 N -0.037 5.037 15 C 0.066 3.934 16 N -0.149 5.149 17 C -0.058 4.058 18 C 0.490 3.510 19 F -0.146 7.146 20 F -0.133 7.133 21 F -0.136 7.136 22 C -0.175 4.175 23 C -0.034 4.034 24 C 0.478 3.522 25 F -0.144 7.144 26 F -0.127 7.127 27 F -0.138 7.138 28 H 0.111 0.889 29 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 7.002 5.660 -7.567 11.762 hybrid contribution 0.316 -0.364 0.457 0.664 sum 7.319 5.297 -7.110 11.497 Atomic orbital electron populations 1.81062 1.11741 1.13167 1.11266 1.24118 0.90787 0.91350 0.91620 1.16297 0.85162 1.19177 1.06115 1.20664 0.86775 0.90731 0.91684 1.19424 0.96084 1.22793 1.06302 0.87892 1.26985 0.94077 0.96949 1.01343 1.69827 1.02330 1.30906 1.34460 0.84951 0.79628 0.78084 0.75852 1.18270 1.18516 1.17971 1.79566 1.17416 1.19649 0.99860 1.47610 1.04527 1.30562 1.20990 1.19710 0.84329 0.96440 0.92935 1.67581 1.35202 1.08152 1.03923 1.21685 0.90389 0.97668 0.96048 1.17167 0.74991 0.78109 0.80771 1.93262 1.29905 1.95095 1.96350 1.93288 1.81545 1.42840 1.95648 1.93286 1.89048 1.82326 1.48903 1.21302 0.98603 1.00439 0.97152 1.20665 0.88386 0.99440 0.94884 1.17316 0.83769 0.75243 0.75865 1.93272 1.90200 1.50310 1.80605 1.93265 1.74245 1.53805 1.91408 1.93370 1.96392 1.94709 1.29335 0.88949 0.75933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -23.02 18.54 19.00 0.35 -22.67 15 2 C 0.33 15.47 15.71 88.33 1.39 16.85 15 3 C -0.25 -11.62 6.25 -19.22 -0.12 -11.74 15 4 C 0.24 12.00 6.92 41.94 0.29 12.29 15 5 C -0.41 -19.70 9.26 23.41 0.22 -19.48 15 6 H 0.10 4.76 7.85 -2.91 -0.02 4.73 15 7 C 0.03 1.37 5.50 85.32 0.47 1.84 15 8 N -0.75 -34.96 11.95 21.86 0.26 -34.70 15 9 Si 1.00 33.42 29.56 68.60 2.03 35.45 15 10 H -0.26 -8.42 7.11 99.48 0.71 -7.71 15 11 H -0.26 -8.27 7.11 99.48 0.71 -7.56 15 12 H -0.26 -8.53 7.11 99.48 0.71 -7.83 15 13 N -0.33 -15.85 9.52 -48.57 -0.46 -16.31 15 14 N -0.27 -11.30 3.81 -179.75 -0.69 -11.99 15 15 C 0.30 12.61 7.84 133.72 1.05 13.65 15 16 N -0.44 -16.16 9.87 -179.81 -1.77 -17.93 15 17 C 0.11 3.03 6.30 43.08 0.27 3.30 15 18 C 0.55 12.63 3.33 71.24 0.24 12.87 15 19 F -0.16 -4.47 16.87 44.97 0.76 -3.71 15 20 F -0.15 -3.02 17.18 44.97 0.77 -2.24 15 21 F -0.15 -3.19 17.29 44.97 0.78 -2.41 15 22 C -0.15 -3.70 8.97 22.12 0.20 -3.50 15 23 C 0.09 2.97 6.35 41.21 0.26 3.24 15 24 C 0.53 15.83 3.41 71.24 0.24 16.07 15 25 F -0.16 -4.82 17.30 44.97 0.78 -4.04 15 26 F -0.15 -3.32 16.47 44.97 0.74 -2.58 15 27 F -0.16 -5.79 16.00 44.97 0.72 -5.07 15 28 H 0.30 12.40 8.29 -92.70 -0.77 11.63 15 29 H 0.22 3.17 7.60 -2.91 -0.02 3.15 15 Total: -1.00 -56.46 309.26 10.08 -46.39 By element: Atomic # 1 Polarization: -4.89 SS G_CDS: 1.31 Total: -3.59 kcal Atomic # 6 Polarization: 40.90 SS G_CDS: 4.51 Total: 45.41 kcal Atomic # 7 Polarization: -101.29 SS G_CDS: -2.31 Total: -103.60 kcal Atomic # 9 Polarization: -24.60 SS G_CDS: 4.55 Total: -20.06 kcal Atomic # 14 Polarization: 33.42 SS G_CDS: 2.03 Total: 35.45 kcal Total: -56.46 10.08 -46.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000169607.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.521 kcal (2) G-P(sol) polarization free energy of solvation -56.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 10.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds