Wall clock time and date at job start Tue Mar 31 2020 05:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30865 * 1 3 3 Si 1.86802 * 120.00118 * 2 1 4 4 H 1.48506 * 109.46707 * 239.99637 * 3 2 1 5 5 H 1.48495 * 109.47258 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47298 * 119.99627 * 3 2 1 7 7 C 1.39912 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99761 * 175.58981 * 7 2 1 9 9 C 1.41136 * 120.00326 * 355.59018 * 7 2 1 10 10 C 1.40875 * 120.16711 * 214.77403 * 9 7 2 11 11 C 1.36358 * 119.83483 * 180.02562 * 10 9 7 12 12 C 1.39512 * 120.16515 * 0.02562 * 11 10 9 13 13 N 1.39129 * 119.83675 * 179.97438 * 12 11 10 14 14 C 1.34777 * 119.99990 * 35.32001 * 13 12 11 15 15 O 1.21598 * 119.99639 * 355.71136 * 14 13 12 16 16 C 1.47487 * 119.99821 * 175.71456 * 14 13 12 17 17 C 1.39760 * 120.18484 * 359.71950 * 16 14 13 18 18 C 1.37867 * 119.91180 * 179.72382 * 17 16 14 19 19 Cl 1.73604 * 119.85724 * 180.29840 * 18 17 16 20 20 C 1.38650 * 120.29005 * 0.58077 * 18 17 16 21 21 C 1.38146 * 120.36896 * 359.69628 * 20 18 17 22 22 Cl 1.73598 * 119.96198 * 180.02562 * 21 20 18 23 23 C 1.38804 * 120.07526 * 359.97438 * 21 20 18 24 24 O 1.35704 * 120.14077 * 180.02562 * 23 21 20 25 25 C 1.39518 * 120.32804 * 0.25151 * 12 11 10 26 26 C 1.36363 * 120.16402 * 359.48709 * 25 12 11 27 27 H 0.96996 * 119.99881 * 0.02562 * 1 2 3 28 28 H 1.08007 * 120.08136 * 359.97438 * 10 9 7 29 29 H 1.07994 * 119.91716 * 179.97438 * 11 10 9 30 30 H 0.97001 * 119.99697 * 215.59605 * 13 12 11 31 31 H 1.07998 * 120.03892 * 0.02562 * 17 16 14 32 32 H 1.08002 * 119.81958 * 179.72097 * 20 18 17 33 33 H 0.96695 * 113.99667 * 269.98242 * 24 23 21 34 34 H 1.07994 * 119.91602 * 179.74798 * 25 12 11 35 35 H 1.07998 * 120.08421 * 180.25622 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.0965 1.6962 -1.2125 5 1 1.2778 2.7465 -0.0006 6 1 3.0964 1.6965 1.2126 7 6 2.0082 -1.2117 0.0005 8 1 3.0858 -1.2131 -0.0714 9 6 1.3057 -2.4321 0.0951 10 6 1.8647 -3.5182 0.7968 11 6 1.1803 -4.6944 0.8834 12 6 -0.0703 -4.8240 0.2788 13 7 -0.7624 -6.0274 0.3710 14 6 -0.6816 -6.7669 1.4950 15 8 0.0568 -6.4223 2.3976 16 6 -1.4886 -7.9940 1.6299 17 6 -2.3427 -8.3904 0.5972 18 6 -3.0902 -9.5415 0.7270 19 17 -4.1449 -10.0368 -0.5599 20 6 -3.0078 -10.3023 1.8832 21 6 -2.1717 -9.9183 2.9137 22 17 -2.0762 -10.8791 4.3564 23 6 -1.4071 -8.7658 2.7965 24 8 -0.5850 -8.3877 3.8077 25 6 -0.6278 -3.7547 -0.4228 26 6 0.0426 -2.5706 -0.5133 27 1 -0.4850 0.8400 -0.0004 28 1 2.8334 -3.4198 1.2643 29 1 1.6078 -5.5280 1.4207 30 1 -1.2998 -6.3362 -0.3751 31 1 -2.4133 -7.7983 -0.3033 32 1 -3.6002 -11.2003 1.9786 33 1 -1.0028 -7.8064 4.4577 34 1 -1.5945 -3.8636 -0.8917 35 1 -0.3921 -1.7424 -1.0532 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000226180.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:20 Heat of formation + Delta-G solvation = -36.857631 kcal Electronic energy + Delta-G solvation = -24510.358724 eV Core-core repulsion = 20525.250825 eV Total energy + Delta-G solvation = -3985.107898 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 351.022 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.78229 -39.14490 -37.60479 -37.24273 -36.82924 -36.32659 -34.52197 -33.10883 -31.61588 -29.97971 -29.62467 -28.82867 -25.51235 -24.11897 -23.02009 -21.72276 -20.95679 -19.93673 -18.89978 -17.91462 -17.33646 -17.03280 -16.30623 -15.97615 -15.66355 -15.18522 -15.12164 -14.55579 -14.17154 -13.89947 -13.83151 -13.12617 -13.08237 -12.89611 -12.69784 -12.60896 -12.18591 -11.76978 -11.63034 -11.44326 -11.37537 -11.32719 -11.17323 -11.06019 -10.99903 -10.76779 -10.09803 -9.55645 -9.52295 -9.43205 -9.21661 -8.97020 -8.93390 -7.60044 -6.92537 -6.66553 -4.38838 0.22718 0.44567 1.38070 1.83217 2.38321 2.73555 3.05031 3.07110 3.08975 3.13673 3.38801 3.55774 3.73686 3.94743 4.27914 4.47102 4.60158 4.65871 4.79951 5.04697 5.25150 5.46582 5.57127 5.62479 5.83323 6.13819 6.39775 6.65960 6.85045 7.01544 7.14014 7.24022 7.36776 7.58848 7.66043 7.79544 8.01051 8.15946 8.26399 8.53652 8.62771 8.87915 8.94125 10.24330 Molecular weight = 351.02amu Principal moments of inertia in cm(-1) A = 0.018265 B = 0.002303 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.608916 B =12155.031203 C =13340.609707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.070 3.930 3 Si 0.916 3.084 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.459 4.459 8 H 0.076 0.924 9 C 0.102 3.898 10 C -0.206 4.206 11 C -0.082 4.082 12 C -0.002 4.002 13 N -0.641 5.641 14 C 0.541 3.459 15 O -0.503 6.503 16 C -0.128 4.128 17 C -0.062 4.062 18 C -0.043 4.043 19 Cl -0.051 7.051 20 C -0.070 4.070 21 C -0.065 4.065 22 Cl -0.040 7.040 23 C 0.184 3.816 24 O -0.460 6.460 25 C -0.117 4.117 26 C -0.142 4.142 27 H 0.279 0.721 28 H 0.097 0.903 29 H 0.109 0.891 30 H 0.394 0.606 31 H 0.148 0.852 32 H 0.151 0.849 33 H 0.402 0.598 34 H 0.092 0.908 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.770 -17.964 1.764 20.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.146 4.146 3 Si 0.741 3.259 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.490 4.490 8 H 0.094 0.906 9 C 0.100 3.900 10 C -0.226 4.226 11 C -0.102 4.102 12 C -0.094 4.094 13 N -0.284 5.284 14 C 0.327 3.673 15 O -0.379 6.379 16 C -0.133 4.133 17 C -0.081 4.081 18 C -0.070 4.070 19 Cl -0.022 7.022 20 C -0.090 4.090 21 C -0.093 4.093 22 Cl -0.011 7.011 23 C 0.135 3.865 24 O -0.272 6.272 25 C -0.137 4.137 26 C -0.162 4.162 27 H 0.090 0.910 28 H 0.115 0.885 29 H 0.127 0.873 30 H 0.228 0.772 31 H 0.166 0.834 32 H 0.169 0.831 33 H 0.262 0.738 34 H 0.110 0.890 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.117 -17.990 2.167 20.284 hybrid contribution -0.513 0.710 -0.051 0.878 sum -9.630 -17.280 2.116 19.895 Atomic orbital electron populations 1.69744 1.07305 1.28915 1.37742 1.25893 0.94960 1.01221 0.92498 0.86235 0.79807 0.80017 0.79825 1.19014 1.20409 1.19048 1.19492 0.94779 0.90227 1.44488 0.90559 1.17738 0.92246 0.91998 0.88054 1.20812 1.01290 0.94913 1.05577 1.20412 0.92630 0.97862 0.99262 1.17215 0.94370 0.85526 1.12288 1.42860 1.48715 1.21261 1.15577 1.17720 0.83250 0.83103 0.83219 1.90829 1.37733 1.69763 1.39620 1.20488 1.00097 0.97424 0.95255 1.21285 0.93320 0.94682 0.98829 1.20536 0.98044 0.96960 0.91465 1.98402 1.64365 1.90971 1.48461 1.20943 0.97605 1.00068 0.90357 1.21136 1.00671 0.96037 0.91443 1.98396 1.97505 1.69826 1.35375 1.18194 0.88289 0.90664 0.89328 1.84776 1.36864 1.69509 1.36044 1.20307 0.98331 0.93076 1.02028 1.21194 0.97312 0.95560 1.02154 0.91015 0.88501 0.87338 0.77150 0.83434 0.83136 0.73825 0.89028 0.84973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.66 10.60 55.55 0.59 -20.07 16 2 C 0.07 1.73 5.42 -17.34 -0.09 1.64 16 3 Si 0.92 18.70 29.56 -169.99 -5.03 13.67 16 4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 7 C -0.46 -12.03 9.02 -37.86 -0.34 -12.37 16 8 H 0.08 1.92 7.85 -52.49 -0.41 1.50 16 9 C 0.10 2.68 5.55 -106.80 -0.59 2.09 16 10 C -0.21 -5.11 9.74 -39.26 -0.38 -5.49 16 11 C -0.08 -1.91 8.61 -39.78 -0.34 -2.25 16 12 C 0.00 -0.04 6.30 -83.60 -0.53 -0.57 16 13 N -0.64 -10.77 5.24 -10.69 -0.06 -10.82 16 14 C 0.54 9.13 7.59 -12.49 -0.09 9.03 16 15 O -0.50 -10.29 12.57 -16.61 -0.21 -10.50 16 16 C -0.13 -1.65 5.88 -104.86 -0.62 -2.26 16 17 C -0.06 -0.62 9.31 -39.15 -0.36 -0.99 16 18 C -0.04 -0.39 6.31 -39.57 -0.25 -0.64 16 19 Cl -0.05 -0.41 28.94 -51.86 -1.50 -1.92 16 20 C -0.07 -0.60 9.59 -39.46 -0.38 -0.98 16 21 C -0.07 -0.66 6.33 -39.41 -0.25 -0.91 16 22 Cl -0.04 -0.38 28.50 -51.86 -1.48 -1.85 16 23 C 0.18 2.24 6.71 -38.67 -0.26 1.98 16 24 O -0.46 -5.97 11.03 -40.71 -0.45 -6.42 16 25 C -0.12 -2.58 9.90 -39.78 -0.39 -2.97 16 26 C -0.14 -3.56 8.62 -39.26 -0.34 -3.90 16 27 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 28 H 0.10 2.29 8.06 -52.48 -0.42 1.87 16 29 H 0.11 2.52 6.22 -52.49 -0.33 2.19 16 30 H 0.39 5.11 6.86 -40.82 -0.28 4.83 16 31 H 0.15 1.22 6.41 -52.49 -0.34 0.89 16 32 H 0.15 0.98 8.06 -52.49 -0.42 0.55 16 33 H 0.40 3.87 9.06 45.56 0.41 4.29 16 34 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 35 H 0.13 3.42 6.13 -52.49 -0.32 3.10 16 LS Contribution 337.66 15.07 5.09 5.09 Total: -1.00 -29.85 337.66 -9.93 -39.78 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -1.67 Total: 11.63 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -5.23 Total: -18.59 kcal Atomic # 7 Polarization: -31.43 SS G_CDS: 0.53 Total: -30.89 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.66 Total: -16.92 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -2.98 Total: -3.77 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.85 -9.93 -39.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000226180.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.926 kcal (2) G-P(sol) polarization free energy of solvation -29.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds