Wall clock time and date at job start Tue Mar 31 2020 05:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30865 * 1 3 3 Si 1.86802 * 120.00118 * 2 1 4 4 H 1.48506 * 109.46707 * 239.99637 * 3 2 1 5 5 H 1.48495 * 109.47258 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47298 * 119.99627 * 3 2 1 7 7 C 1.39912 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99761 * 175.58981 * 7 2 1 9 9 C 1.41136 * 120.00326 * 355.59018 * 7 2 1 10 10 C 1.40875 * 120.16711 * 214.77403 * 9 7 2 11 11 C 1.36358 * 119.83483 * 180.02562 * 10 9 7 12 12 C 1.39512 * 120.16515 * 0.02562 * 11 10 9 13 13 N 1.39129 * 119.83675 * 179.97438 * 12 11 10 14 14 C 1.34777 * 119.99990 * 35.32001 * 13 12 11 15 15 O 1.21598 * 119.99639 * 355.71136 * 14 13 12 16 16 C 1.47487 * 119.99821 * 175.71456 * 14 13 12 17 17 C 1.39760 * 120.18484 * 359.71950 * 16 14 13 18 18 C 1.37867 * 119.91180 * 179.72382 * 17 16 14 19 19 Cl 1.73604 * 119.85724 * 180.29840 * 18 17 16 20 20 C 1.38650 * 120.29005 * 0.58077 * 18 17 16 21 21 C 1.38146 * 120.36896 * 359.69628 * 20 18 17 22 22 Cl 1.73598 * 119.96198 * 180.02562 * 21 20 18 23 23 C 1.38804 * 120.07526 * 359.97438 * 21 20 18 24 24 O 1.35704 * 120.14077 * 180.02562 * 23 21 20 25 25 C 1.39518 * 120.32804 * 0.25151 * 12 11 10 26 26 C 1.36363 * 120.16402 * 359.48709 * 25 12 11 27 27 H 0.96996 * 119.99881 * 0.02562 * 1 2 3 28 28 H 1.08007 * 120.08136 * 359.97438 * 10 9 7 29 29 H 1.07994 * 119.91716 * 179.97438 * 11 10 9 30 30 H 0.97001 * 119.99697 * 215.59605 * 13 12 11 31 31 H 1.07998 * 120.03892 * 0.02562 * 17 16 14 32 32 H 1.08002 * 119.81958 * 179.72097 * 20 18 17 33 33 H 0.96695 * 113.99667 * 269.98242 * 24 23 21 34 34 H 1.07994 * 119.91602 * 179.74798 * 25 12 11 35 35 H 1.07998 * 120.08421 * 180.25622 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.0965 1.6962 -1.2125 5 1 1.2778 2.7465 -0.0006 6 1 3.0964 1.6965 1.2126 7 6 2.0082 -1.2117 0.0005 8 1 3.0858 -1.2131 -0.0714 9 6 1.3057 -2.4321 0.0951 10 6 1.8647 -3.5182 0.7968 11 6 1.1803 -4.6944 0.8834 12 6 -0.0703 -4.8240 0.2788 13 7 -0.7624 -6.0274 0.3710 14 6 -0.6816 -6.7669 1.4950 15 8 0.0568 -6.4223 2.3976 16 6 -1.4886 -7.9940 1.6299 17 6 -2.3427 -8.3904 0.5972 18 6 -3.0902 -9.5415 0.7270 19 17 -4.1449 -10.0368 -0.5599 20 6 -3.0078 -10.3023 1.8832 21 6 -2.1717 -9.9183 2.9137 22 17 -2.0762 -10.8791 4.3564 23 6 -1.4071 -8.7658 2.7965 24 8 -0.5850 -8.3877 3.8077 25 6 -0.6278 -3.7547 -0.4228 26 6 0.0426 -2.5706 -0.5133 27 1 -0.4850 0.8400 -0.0004 28 1 2.8334 -3.4198 1.2643 29 1 1.6078 -5.5280 1.4207 30 1 -1.2998 -6.3362 -0.3751 31 1 -2.4133 -7.7983 -0.3033 32 1 -3.6002 -11.2003 1.9786 33 1 -1.0028 -7.8064 4.4577 34 1 -1.5945 -3.8636 -0.8917 35 1 -0.3921 -1.7424 -1.0532 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000226180.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:19 Heat of formation + Delta-G solvation = -53.481136 kcal Electronic energy + Delta-G solvation = -24511.079573 eV Core-core repulsion = 20525.250825 eV Total energy + Delta-G solvation = -3985.828748 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 351.022 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.89374 -40.43985 -38.92397 -38.36932 -37.67512 -37.11609 -36.16621 -34.79614 -32.66852 -31.46720 -30.85319 -30.54618 -27.11714 -25.32799 -23.94811 -23.35672 -22.60681 -21.41935 -19.91437 -19.29316 -18.92305 -18.25856 -17.39274 -17.13221 -16.90762 -16.68304 -16.19645 -15.78857 -15.63578 -15.33628 -14.85458 -14.63390 -14.46376 -14.00942 -13.89043 -13.77954 -13.58536 -13.35177 -13.22869 -12.88862 -12.78055 -12.49789 -12.37453 -12.15826 -12.06993 -11.92911 -11.74960 -11.39820 -11.22657 -10.85929 -10.63174 -10.26863 -9.75990 -9.46990 -8.74405 -8.50792 -6.33245 -0.66235 -0.35398 0.62777 0.81691 1.08575 1.14487 1.40393 1.45639 1.51714 1.63624 2.12768 2.24552 2.34204 2.80537 2.86984 3.35591 3.66304 3.68767 3.77494 3.94044 4.14224 4.39980 4.46480 4.53122 4.65231 4.76142 4.93450 5.03523 5.11570 5.14424 5.32509 5.41539 5.69693 5.89236 6.00480 6.12772 6.38646 6.53862 6.60747 6.67936 6.96598 6.98400 7.25815 8.41640 Molecular weight = 351.02amu Principal moments of inertia in cm(-1) A = 0.018265 B = 0.002303 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.608916 B =12155.031203 C =13340.609707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.029 3.971 3 Si 0.987 3.013 4 H -0.258 1.258 5 H -0.268 1.268 6 H -0.266 1.266 7 C -0.497 4.497 8 H 0.072 0.928 9 C 0.070 3.930 10 C -0.221 4.221 11 C -0.094 4.094 12 C 0.019 3.981 13 N -0.636 5.636 14 C 0.544 3.456 15 O -0.544 6.544 16 C -0.147 4.147 17 C -0.050 4.050 18 C -0.042 4.042 19 Cl -0.035 7.035 20 C -0.051 4.051 21 C -0.068 4.068 22 Cl -0.033 7.033 23 C 0.176 3.824 24 O -0.479 6.479 25 C -0.114 4.114 26 C -0.160 4.160 27 H 0.285 0.715 28 H 0.095 0.905 29 H 0.107 0.893 30 H 0.415 0.585 31 H 0.166 0.834 32 H 0.178 0.822 33 H 0.412 0.588 34 H 0.127 0.873 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.676 -19.596 1.177 22.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.183 4.183 3 Si 0.808 3.192 4 H -0.183 1.183 5 H -0.192 1.192 6 H -0.191 1.191 7 C -0.528 4.528 8 H 0.090 0.910 9 C 0.068 3.932 10 C -0.241 4.241 11 C -0.113 4.113 12 C -0.075 4.075 13 N -0.281 5.281 14 C 0.333 3.667 15 O -0.423 6.423 16 C -0.151 4.151 17 C -0.069 4.069 18 C -0.069 4.069 19 Cl -0.006 7.006 20 C -0.070 4.070 21 C -0.096 4.096 22 Cl -0.004 7.004 23 C 0.128 3.872 24 O -0.293 6.293 25 C -0.134 4.134 26 C -0.180 4.180 27 H 0.096 0.904 28 H 0.113 0.887 29 H 0.125 0.875 30 H 0.254 0.746 31 H 0.184 0.816 32 H 0.195 0.805 33 H 0.273 0.727 34 H 0.145 0.855 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.059 -19.666 1.560 22.616 hybrid contribution -0.056 0.936 0.167 0.953 sum -11.114 -18.730 1.727 21.848 Atomic orbital electron populations 1.69805 1.08508 1.30071 1.38265 1.26716 0.95819 1.04222 0.91569 0.85175 0.78538 0.75677 0.79812 1.18268 1.19202 1.19073 1.19710 0.94865 0.91376 1.46855 0.90954 1.18036 0.93368 0.92612 0.89220 1.20920 1.01631 0.95516 1.06058 1.20504 0.93649 0.97350 0.99845 1.17237 0.93508 0.86972 1.09758 1.42731 1.48676 1.19884 1.16831 1.18269 0.82557 0.83659 0.82230 1.90810 1.39535 1.70985 1.40933 1.20055 1.01611 0.96527 0.96956 1.21408 0.92064 0.94996 0.98453 1.20540 0.97898 0.96510 0.91946 1.98419 1.63732 1.90744 1.47739 1.21259 0.96248 1.00237 0.89265 1.21097 1.00731 0.95555 0.92223 1.98402 1.97501 1.69398 1.35101 1.18363 0.88549 0.91355 0.88972 1.84734 1.37968 1.69937 1.36645 1.20559 0.99335 0.91950 1.01549 1.21183 0.97462 0.96516 1.02806 0.90410 0.88688 0.87487 0.74626 0.81629 0.80506 0.72708 0.85475 0.86212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.69 10.60 21.82 0.23 -43.46 16 2 C 0.03 1.47 5.42 85.24 0.46 1.93 16 3 Si 0.99 38.81 29.56 68.60 2.03 40.84 16 4 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 5 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 6 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 7 C -0.50 -27.14 9.02 23.39 0.21 -26.93 16 8 H 0.07 3.82 7.85 -2.91 -0.02 3.80 16 9 C 0.07 3.82 5.55 -21.27 -0.12 3.70 16 10 C -0.22 -11.45 9.74 22.48 0.22 -11.23 16 11 C -0.09 -4.46 8.61 22.14 0.19 -4.27 16 12 C 0.02 0.79 6.30 38.60 0.24 1.03 16 13 N -0.64 -20.38 5.24 -306.00 -1.60 -21.99 16 14 C 0.54 17.92 7.59 86.68 0.66 18.58 16 15 O -0.54 -22.46 12.57 16.91 0.21 -22.25 16 16 C -0.15 -3.54 5.88 -20.02 -0.12 -3.66 16 17 C -0.05 -0.86 9.31 22.55 0.21 -0.65 16 18 C -0.04 -0.61 6.31 22.28 0.14 -0.47 16 19 Cl -0.04 -0.45 28.94 -2.72 -0.08 -0.53 16 20 C -0.05 -0.70 9.59 22.35 0.21 -0.49 16 21 C -0.07 -1.23 6.33 22.38 0.14 -1.08 16 22 Cl -0.03 -0.56 28.50 -2.72 -0.08 -0.63 16 23 C 0.18 4.06 6.71 22.86 0.15 4.21 16 24 O -0.48 -12.35 11.03 -69.31 -0.76 -13.12 16 25 C -0.11 -4.93 9.90 22.14 0.22 -4.71 16 26 C -0.16 -8.16 8.62 22.48 0.19 -7.97 16 27 H 0.29 13.52 8.30 -92.71 -0.77 12.75 16 28 H 0.09 4.76 8.06 -2.91 -0.02 4.74 16 29 H 0.11 5.10 6.22 -2.91 -0.02 5.09 16 30 H 0.42 9.64 6.86 -92.71 -0.64 9.00 16 31 H 0.17 2.15 6.41 -2.91 -0.02 2.13 16 32 H 0.18 1.52 8.06 -2.91 -0.02 1.50 16 33 H 0.41 8.05 9.06 -74.06 -0.67 7.38 16 34 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 35 H 0.12 6.38 6.13 -2.91 -0.02 6.36 16 Total: -1.00 -66.72 337.66 2.86 -63.85 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: -0.10 Total: 29.28 kcal Atomic # 6 Polarization: -35.02 SS G_CDS: 3.02 Total: -32.00 kcal Atomic # 7 Polarization: -64.07 SS G_CDS: -1.37 Total: -65.45 kcal Atomic # 8 Polarization: -34.81 SS G_CDS: -0.55 Total: -35.36 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.84 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -0.16 Total: -1.16 kcal Total: -66.72 2.86 -63.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000226180.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.371 kcal (2) G-P(sol) polarization free energy of solvation -66.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds