Wall clock time and date at job start Tue Mar 31 2020 07:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30797 * 1 3 3 Si 1.86799 * 119.99721 * 2 1 4 4 H 1.48500 * 109.47383 * 274.98562 * 3 2 1 5 5 H 1.48498 * 109.47439 * 34.98295 * 3 2 1 6 6 H 1.48503 * 109.47348 * 154.98645 * 3 2 1 7 7 C 1.39881 * 120.00523 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00229 * 186.33115 * 7 2 1 9 9 C 1.39218 * 119.99399 * 6.33375 * 7 2 1 10 10 O 1.22136 * 120.00545 * 353.64106 * 9 7 2 11 11 N 1.34777 * 119.99700 * 173.64143 * 9 7 2 12 12 N 1.40100 * 120.00017 * 179.97438 * 11 9 7 13 13 C 1.31393 * 120.00207 * 180.02562 * 12 11 9 14 14 C 1.40600 * 120.00205 * 180.02562 * 13 12 11 15 15 C 1.39792 * 125.89878 * 179.97438 * 14 13 12 16 16 C 1.38659 * 106.84451 * 179.78978 * 15 14 13 17 17 C 1.39055 * 107.03906 * 0.38780 * 16 15 14 18 18 C 1.46990 * 125.72603 * 179.87472 * 17 16 15 19 19 C 1.40131 * 120.19305 * 129.71153 * 18 17 16 20 20 C 1.37740 * 119.84386 * 179.72059 * 19 18 17 21 21 C 1.38549 * 120.24254 * 359.97438 * 20 19 18 22 22 C 1.38521 * 120.39176 * 0.02562 * 21 20 19 23 23 Cl 1.73598 * 119.92830 * 180.02562 * 22 21 20 24 24 C 1.38098 * 120.14753 * 0.02562 * 22 21 20 25 25 Cl 1.73596 * 120.12451 * 180.02562 * 24 22 21 26 26 O 1.34597 * 108.54614 * 359.60541 * 17 16 15 27 27 H 0.97000 * 120.00065 * 359.97438 * 1 2 3 28 28 H 0.97002 * 120.00217 * 0.02562 * 11 9 7 29 29 H 1.08006 * 119.99796 * 0.02562 * 13 12 11 30 30 H 1.08000 * 126.57526 * 0.04228 * 15 14 13 31 31 H 1.08005 * 126.48277 * 180.25647 * 16 15 14 32 32 H 1.07997 * 120.07547 * 359.70040 * 19 18 17 33 33 H 1.08003 * 119.87985 * 179.97438 * 20 19 18 34 34 H 1.08007 * 119.80869 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 2.3840 2.1073 -1.3948 5 1 1.4960 2.6200 0.8027 6 1 3.5882 1.4122 0.5920 7 6 2.0075 -1.2113 0.0005 8 1 3.0825 -1.2141 0.1037 9 6 1.3177 -2.4134 -0.1319 10 8 0.0964 -2.4200 -0.1318 11 7 1.9978 -3.5699 -0.2603 12 7 1.3038 -4.7796 -0.3931 13 6 1.9668 -5.9072 -0.5177 14 6 1.2703 -7.1212 -0.6515 15 6 1.8479 -8.3864 -0.7919 16 6 0.8054 -9.2957 -0.8868 17 6 -0.3776 -8.5687 -0.8118 18 6 -1.7350 -9.1294 -0.8733 19 6 -2.6842 -8.7855 0.0985 20 6 -3.9558 -9.3106 0.0307 21 6 -4.2993 -10.1766 -0.9948 22 6 -3.3688 -10.5232 -1.9607 23 17 -3.8125 -11.6089 -3.2406 24 6 -2.0890 -10.0071 -1.9077 25 17 -0.9236 -10.4413 -3.1188 26 8 -0.0711 -7.2661 -0.6675 27 1 -0.4850 0.8400 0.0004 28 1 2.9678 -3.5648 -0.2600 29 1 3.0468 -5.9014 -0.5174 30 1 2.9036 -8.6127 -0.8170 31 1 0.8952 -10.3661 -1.0000 32 1 -2.4192 -8.1106 0.8989 33 1 -4.6877 -9.0463 0.7796 34 1 -5.2985 -10.5840 -1.0414 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000567426.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:35 Heat of formation + Delta-G solvation = 9.349358 kcal Electronic energy + Delta-G solvation = -23932.012687 eV Core-core repulsion = 19883.482563 eV Total energy + Delta-G solvation = -4048.530124 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 352.017 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.38404 -40.36521 -39.68019 -37.65381 -37.61501 -37.15723 -34.77644 -34.23053 -33.78223 -32.45828 -31.79403 -29.78045 -28.26431 -25.46848 -23.99149 -23.21435 -22.61462 -21.99961 -21.17283 -19.71215 -18.91330 -17.86021 -17.73839 -17.44151 -17.39499 -16.61073 -16.47798 -15.88133 -15.47699 -15.28535 -15.23385 -15.15696 -14.75960 -14.05383 -14.01182 -13.76809 -13.32853 -13.26080 -13.05185 -12.99698 -12.87934 -12.76081 -12.68822 -12.49851 -12.13181 -12.01155 -11.92429 -11.22088 -11.04943 -10.92952 -10.53968 -10.03131 -9.89097 -9.86540 -8.58135 -8.46785 -7.15238 -0.58797 -0.16524 0.06799 0.68570 1.03468 1.28206 1.38664 1.41023 1.58175 1.80880 1.99245 2.02420 2.31099 2.38578 2.41631 3.35481 3.61244 3.71989 3.74956 3.85555 4.02801 4.07648 4.17746 4.27541 4.38607 4.72463 4.75849 4.78800 4.89959 5.00582 5.10323 5.16160 5.18454 5.45582 5.54258 5.78910 5.97280 6.05216 6.63696 6.84375 7.39013 8.36845 8.54744 Molecular weight = 352.02amu Principal moments of inertia in cm(-1) A = 0.018261 B = 0.002051 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.970180 B =13648.191819 C =14420.208299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.028 3.972 3 Si 1.013 2.987 4 H -0.260 1.260 5 H -0.269 1.269 6 H -0.242 1.242 7 C -0.556 4.556 8 H 0.099 0.901 9 C 0.540 3.460 10 O -0.620 6.620 11 N -0.587 5.587 12 N -0.255 5.255 13 C 0.079 3.921 14 C 0.011 3.989 15 C -0.142 4.142 16 C -0.160 4.160 17 C -0.007 4.007 18 C -0.018 4.018 19 C -0.091 4.091 20 C -0.090 4.090 21 C -0.082 4.082 22 C -0.041 4.041 23 Cl -0.042 7.042 24 C -0.023 4.023 25 Cl -0.040 7.040 26 O -0.169 6.169 27 H 0.282 0.718 28 H 0.389 0.611 29 H 0.181 0.819 30 H 0.199 0.801 31 H 0.177 0.823 32 H 0.140 0.860 33 H 0.177 0.823 34 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.440 -24.321 -1.938 24.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.191 4.191 3 Si 0.830 3.170 4 H -0.185 1.185 5 H -0.194 1.194 6 H -0.164 1.164 7 C -0.591 4.591 8 H 0.117 0.883 9 C 0.351 3.649 10 O -0.506 6.506 11 N -0.333 5.333 12 N -0.066 5.066 13 C -0.127 4.127 14 C -0.041 4.041 15 C -0.165 4.165 16 C -0.179 4.179 17 C -0.060 4.060 18 C -0.019 4.019 19 C -0.109 4.109 20 C -0.108 4.108 21 C -0.101 4.101 22 C -0.068 4.068 23 Cl -0.013 7.013 24 C -0.051 4.051 25 Cl -0.010 7.010 26 O -0.063 6.063 27 H 0.092 0.908 28 H 0.227 0.773 29 H 0.198 0.802 30 H 0.216 0.784 31 H 0.194 0.806 32 H 0.158 0.842 33 H 0.195 0.805 34 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -3.445 -23.500 -2.066 23.841 hybrid contribution 1.540 0.388 -0.328 1.622 sum -1.905 -23.112 -2.394 23.314 Atomic orbital electron populations 1.70290 1.10066 1.29881 1.32374 1.27189 0.95546 1.05613 0.90774 0.84793 0.78938 0.73768 0.79483 1.18492 1.19367 1.16425 1.19974 0.96662 0.90345 1.52154 0.88252 1.16881 0.87410 0.82214 0.78374 1.90719 1.15897 1.86280 1.57722 1.47347 1.08032 1.02379 1.75577 1.75424 1.29031 0.93647 1.08529 1.22611 0.98884 0.87817 1.03365 1.19893 0.79284 0.94942 1.10028 1.22503 1.02105 0.88179 1.03743 1.22209 0.89450 1.01365 1.04892 1.21189 0.94673 0.80858 1.09306 1.17630 0.90655 0.97805 0.95814 1.21746 0.93230 0.98442 0.97528 1.21544 0.95848 0.94894 0.98524 1.21646 1.00059 0.96690 0.91671 1.20771 0.92853 0.98425 0.94761 1.98396 1.92374 1.61636 1.48848 1.20897 0.90915 1.00658 0.92594 1.98389 1.57774 1.91448 1.53438 1.84291 1.25423 1.27513 1.69118 0.90760 0.77276 0.80244 0.78389 0.80580 0.84236 0.80530 0.80588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -48.62 11.70 21.81 0.26 -48.36 16 2 C 0.03 1.51 5.48 85.24 0.47 1.98 16 3 Si 1.01 39.12 29.56 68.60 2.03 41.15 16 4 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 5 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 6 H -0.24 -8.45 7.11 99.48 0.71 -7.74 16 7 C -0.56 -31.14 9.17 22.90 0.21 -30.93 16 8 H 0.10 4.79 7.85 -2.91 -0.02 4.77 16 9 C 0.54 33.01 7.59 84.48 0.64 33.66 16 10 O -0.62 -44.65 15.18 -5.76 -0.09 -44.74 16 11 N -0.59 -29.01 6.26 -181.37 -1.14 -30.14 16 12 N -0.26 -12.22 11.02 -56.24 -0.62 -12.84 16 13 C 0.08 2.72 10.71 85.34 0.91 3.63 16 14 C 0.01 0.35 6.96 23.22 0.16 0.51 16 15 C -0.14 -3.17 10.88 22.75 0.25 -2.92 16 16 C -0.16 -3.66 9.39 22.57 0.21 -3.45 16 17 C -0.01 -0.19 6.31 24.76 0.16 -0.04 16 18 C -0.02 -0.45 5.81 -20.05 -0.12 -0.57 16 19 C -0.09 -1.96 9.80 22.61 0.22 -1.74 16 20 C -0.09 -1.33 10.02 22.23 0.22 -1.10 16 21 C -0.08 -1.15 9.83 22.41 0.22 -0.93 16 22 C -0.04 -0.76 6.31 22.30 0.14 -0.62 16 23 Cl -0.04 -0.72 27.95 -2.72 -0.08 -0.79 16 24 C -0.02 -0.51 6.35 22.71 0.14 -0.37 16 25 Cl -0.04 -0.88 25.65 -2.72 -0.07 -0.95 16 26 O -0.17 -6.24 10.64 -11.56 -0.12 -6.37 16 27 H 0.28 15.29 8.30 -92.71 -0.77 14.52 16 28 H 0.39 15.34 8.62 -213.32 -1.84 13.50 16 29 H 0.18 4.26 8.04 -2.91 -0.02 4.23 16 30 H 0.20 2.66 8.06 -2.91 -0.02 2.63 16 31 H 0.18 3.08 7.77 -2.91 -0.02 3.06 16 32 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 33 H 0.18 1.42 8.06 -2.91 -0.02 1.40 16 34 H 0.18 1.34 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -86.74 346.71 3.37 -83.37 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: -0.65 Total: 22.57 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: 3.84 Total: -2.90 kcal Atomic # 7 Polarization: -89.84 SS G_CDS: -1.50 Total: -91.34 kcal Atomic # 8 Polarization: -50.90 SS G_CDS: -0.21 Total: -51.11 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Atomic # 17 Polarization: -1.59 SS G_CDS: -0.15 Total: -1.74 kcal Total: -86.74 3.37 -83.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000567426.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.720 kcal (2) G-P(sol) polarization free energy of solvation -86.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds