Wall clock time and date at job start Tue Mar 31 2020 05:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42904 * 109.46903 * 2 1 4 4 C 1.35960 * 117.00020 * 179.97438 * 3 2 1 5 5 C 1.37937 * 119.98406 * 359.72410 * 4 3 2 6 6 C 1.40210 * 119.82524 * 179.79360 * 5 4 3 7 7 C 1.46694 * 120.10780 * 180.25140 * 6 5 4 8 8 N 1.30723 * 120.00282 * 180.22615 * 7 6 5 9 9 N 1.40104 * 120.00315 * 180.02562 * 8 7 6 10 10 C 1.34779 * 120.00393 * 180.02562 * 9 8 7 11 11 O 1.21988 * 119.99981 * 359.97438 * 10 9 8 12 12 C 1.40584 * 120.00114 * 179.97438 * 10 9 8 13 13 H 1.07998 * 120.00024 * 353.71172 * 12 10 9 14 14 C 1.40190 * 120.00049 * 173.70839 * 12 10 9 15 15 N 1.30611 * 119.99995 * 6.28655 * 14 12 10 16 16 Si 1.86795 * 119.99931 * 186.27934 * 14 12 10 17 17 H 1.48496 * 109.47166 * 94.99098 * 16 14 12 18 18 H 1.48504 * 109.46998 * 214.98954 * 16 14 12 19 19 H 1.48498 * 109.47564 * 334.98632 * 16 14 12 20 20 C 1.40352 * 119.79410 * 0.47930 * 6 5 4 21 21 C 1.37591 * 119.96045 * 359.75394 * 20 6 5 22 22 C 1.39080 * 120.18231 * 0.02562 * 21 20 6 23 23 O 1.35732 * 119.89915 * 180.02562 * 22 21 20 24 24 C 1.42905 * 116.99643 * 359.97438 * 23 22 21 25 25 C 1.50700 * 109.46677 * 179.97438 * 24 23 22 26 26 O 1.20820 * 120.00179 * 0.02562 * 25 24 23 27 27 O 1.34236 * 119.99601 * 179.97438 * 25 24 23 28 28 C 1.45204 * 116.99911 * 179.97438 * 27 25 24 29 29 H 1.09003 * 109.46768 * 60.00309 * 1 2 3 30 30 H 1.09004 * 109.47340 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47587 * 300.00331 * 1 2 3 32 32 H 1.09003 * 109.46768 * 119.99691 * 2 1 3 33 33 H 1.08994 * 109.47587 * 239.99669 * 2 1 3 34 34 H 1.08008 * 120.08716 * 0.02562 * 5 4 3 35 35 H 1.08003 * 119.99751 * 0.23165 * 7 6 5 36 36 H 0.96999 * 119.99703 * 359.97438 * 9 8 7 37 37 H 0.96995 * 120.00012 * 179.97438 * 15 14 12 38 38 H 1.07999 * 120.01785 * 179.72518 * 20 6 5 39 39 H 1.07997 * 119.90573 * 180.02562 * 21 20 6 40 40 H 1.09002 * 109.47062 * 299.99933 * 24 23 22 41 41 H 1.09000 * 109.47319 * 59.99674 * 24 23 22 42 42 H 1.09001 * 109.46580 * 300.00433 * 28 27 25 43 43 H 1.08996 * 109.46734 * 59.99993 * 28 27 25 44 44 H 1.08996 * 109.46953 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3541 1.5255 0.0005 5 6 4.1941 0.4314 0.0068 6 6 5.5836 0.6190 0.0030 7 6 6.4827 -0.5401 0.0040 8 7 7.7778 -0.3628 0.0049 9 7 8.6365 -1.4699 0.0054 10 6 9.9718 -1.2872 0.0068 11 8 10.4328 -0.1578 0.0072 12 6 10.8333 -2.3981 0.0078 13 1 10.4295 -3.3945 0.1099 14 6 12.2167 -2.2125 -0.1237 15 7 12.7166 -1.0058 -0.1238 16 14 13.3449 -3.6909 -0.2988 17 1 13.6006 -3.9507 -1.7383 18 1 14.6312 -3.4163 0.3907 19 1 12.7001 -4.8809 0.3121 20 6 6.1118 1.9194 0.0030 21 6 5.2659 3.0046 0.0016 22 6 3.8878 2.8170 0.0007 23 8 3.0587 3.8916 -0.0011 24 6 3.6706 5.1830 -0.0016 25 6 2.6017 6.2453 -0.0044 26 8 1.4356 5.9289 -0.0053 27 8 2.9451 7.5430 -0.0047 28 6 1.8630 8.5112 -0.0080 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8932 -0.5138 0.8901 33 1 1.8934 -0.5138 -0.8899 34 1 3.7826 -0.5672 0.0109 35 1 6.0745 -1.5401 0.0040 36 1 8.2699 -2.3680 0.0054 37 1 13.6737 -0.8774 -0.2144 38 1 7.1815 2.0681 0.0045 39 1 5.6733 4.0048 0.0011 40 1 4.2895 5.2922 0.8890 41 1 4.2916 5.2906 -0.8909 42 1 1.2516 8.3697 -0.8993 43 1 1.2477 8.3713 0.8807 44 1 2.2775 9.5193 -0.0084 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000567438.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:49 Heat of formation + Delta-G solvation = -121.517182 kcal Electronic energy + Delta-G solvation = -29040.124941 eV Core-core repulsion = 24539.312451 eV Total energy + Delta-G solvation = -4500.812490 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 350.140 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.00619 -40.38105 -38.69902 -37.82643 -37.14686 -36.66490 -34.97598 -32.72059 -32.15673 -31.36983 -30.28737 -30.06005 -28.53398 -27.30505 -26.44181 -24.20428 -23.42464 -22.19709 -21.20910 -20.67382 -19.79642 -18.88079 -17.94226 -17.58565 -17.26435 -17.25814 -16.87796 -16.27407 -16.27272 -15.60503 -15.60439 -15.41564 -14.78402 -14.55908 -14.18279 -13.90417 -13.79049 -13.37323 -13.34708 -13.16145 -12.93865 -12.75697 -12.65400 -12.38436 -12.26786 -12.09023 -11.71391 -11.50899 -11.34894 -11.22111 -11.21270 -11.16758 -10.96348 -10.73351 -10.69557 -10.52604 -10.40309 -9.57510 -9.07985 -8.80886 -8.13040 -7.81577 -7.16762 -6.45432 -4.99513 0.99935 1.43198 1.79015 1.80843 2.77585 3.02580 3.07962 3.09712 3.12551 3.30728 3.65455 3.93445 4.04572 4.28519 4.40474 4.62190 4.64628 4.71298 4.72487 4.76983 4.80599 4.84649 5.00767 5.06331 5.06609 5.12934 5.25698 5.35998 5.44566 5.58913 5.61787 5.70261 5.85085 5.86653 5.90797 6.09643 6.30709 6.53625 6.65322 6.78984 6.91284 7.16983 7.34737 7.50368 7.78542 7.94384 8.60344 8.72021 9.23649 10.34138 10.58753 Molecular weight = 350.14amu Principal moments of inertia in cm(-1) A = 0.012830 B = 0.001891 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.835021 B =14801.561885 C =16946.947482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 O -0.305 6.305 4 C 0.107 3.893 5 C -0.162 4.162 6 C -0.009 4.009 7 C 0.014 3.986 8 N -0.182 5.182 9 N -0.586 5.586 10 C 0.557 3.443 11 O -0.553 6.553 12 C -0.537 4.537 13 H 0.072 0.928 14 C 0.088 3.912 15 N -0.743 5.743 16 Si 0.917 3.083 17 H -0.269 1.269 18 H -0.276 1.276 19 H -0.262 1.262 20 C -0.086 4.086 21 C -0.171 4.171 22 C 0.090 3.910 23 O -0.285 6.285 24 C 0.067 3.933 25 C 0.464 3.536 26 O -0.482 6.482 27 O -0.357 6.357 28 C 0.038 3.962 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.138 0.862 35 H 0.107 0.893 36 H 0.370 0.630 37 H 0.275 0.725 38 H 0.144 0.856 39 H 0.137 0.863 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.602 9.141 -0.028 23.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.219 6.219 4 C 0.062 3.938 5 C -0.183 4.183 6 C -0.012 4.012 7 C -0.195 4.195 8 N 0.008 4.992 9 N -0.332 5.332 10 C 0.366 3.634 11 O -0.433 6.433 12 C -0.573 4.573 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.370 5.370 16 Si 0.741 3.259 17 H -0.195 1.195 18 H -0.201 1.201 19 H -0.186 1.186 20 C -0.106 4.106 21 C -0.189 4.189 22 C 0.044 3.956 23 O -0.199 6.199 24 C -0.010 4.010 25 C 0.305 3.695 26 O -0.367 6.367 27 O -0.274 6.274 28 C -0.056 4.056 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.155 0.845 35 H 0.124 0.876 36 H 0.205 0.795 37 H 0.086 0.914 38 H 0.162 0.838 39 H 0.155 0.845 40 H 0.126 0.874 41 H 0.126 0.874 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -20.924 10.689 -0.031 23.497 hybrid contribution -0.088 -2.022 -0.098 2.026 sum -21.013 8.668 -0.128 22.731 Atomic orbital electron populations 1.21751 0.92904 1.02572 1.03556 1.22784 0.95825 0.82292 1.01408 1.86182 1.17970 1.28640 1.89158 1.17867 0.83016 0.90482 1.02470 1.21057 0.92543 0.97518 1.07204 1.18235 0.90865 0.92118 0.99948 1.23819 0.90800 0.96367 1.08473 1.74807 1.02990 1.17843 1.03603 1.48135 1.06546 1.02726 1.75823 1.16787 0.77039 0.91170 0.78417 1.90727 1.73240 1.25441 1.53864 1.19728 0.91375 0.93412 1.52826 0.91013 1.25767 0.98523 0.96776 0.92505 1.70015 1.13481 1.22104 1.31405 0.86194 0.79235 0.81355 0.79111 1.19462 1.20089 1.18603 1.21313 1.00990 0.90515 0.97805 1.21027 0.90499 1.00554 1.06847 1.18354 0.88649 0.84274 1.04364 1.86072 1.33043 1.11137 1.89665 1.21861 0.92516 0.80915 1.05680 1.23035 0.89734 0.83227 0.73544 1.90730 1.20428 1.82368 1.43143 1.86455 1.40370 1.16096 1.84447 1.23328 0.89210 0.90195 1.02858 0.91576 0.90530 0.91570 0.92012 0.92009 0.84450 0.87612 0.79490 0.91420 0.83783 0.84540 0.87428 0.87440 0.91643 0.91634 0.87657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.28 37.16 0.38 -0.77 16 2 C 0.05 0.49 5.46 37.16 0.20 0.69 16 3 O -0.31 -4.06 9.92 -34.18 -0.34 -4.40 16 4 C 0.11 1.46 6.70 -39.13 -0.26 1.20 16 5 C -0.16 -2.07 8.78 -38.95 -0.34 -2.41 16 6 C -0.01 -0.14 5.88 -104.95 -0.62 -0.76 16 7 C 0.01 0.23 10.75 -14.61 -0.16 0.08 16 8 N -0.18 -3.96 10.18 32.12 0.33 -3.63 16 9 N -0.59 -13.70 6.26 28.90 0.18 -13.52 16 10 C 0.56 15.92 7.64 -15.37 -0.12 15.80 16 11 O -0.55 -18.14 15.22 4.93 0.08 -18.07 16 12 C -0.54 -14.60 9.25 -37.96 -0.35 -14.95 16 13 H 0.07 1.74 7.86 -52.49 -0.41 1.33 16 14 C 0.09 2.35 5.49 -17.34 -0.10 2.26 16 15 N -0.74 -21.41 11.73 55.56 0.65 -20.75 16 16 Si 0.92 19.03 29.56 -169.99 -5.03 14.00 16 17 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 18 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 19 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 20 C -0.09 -1.29 9.58 -39.02 -0.37 -1.67 16 21 C -0.17 -2.14 9.01 -39.51 -0.36 -2.50 16 22 C 0.09 1.21 6.72 -38.71 -0.26 0.95 16 23 O -0.29 -3.81 9.44 -46.57 -0.44 -4.25 16 24 C 0.07 0.62 5.33 36.01 0.19 0.82 16 25 C 0.46 4.96 8.03 36.01 0.29 5.25 16 26 O -0.48 -6.85 16.25 -25.47 -0.41 -7.26 16 27 O -0.36 -3.10 10.57 -39.27 -0.41 -3.52 16 28 C 0.04 0.23 10.56 101.05 1.07 1.29 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.51 7.64 -51.93 -0.40 0.11 16 33 H 0.06 0.51 7.67 -51.93 -0.40 0.11 16 34 H 0.14 1.40 6.28 -52.48 -0.33 1.07 16 35 H 0.11 1.46 8.03 -52.48 -0.42 1.04 16 36 H 0.37 7.22 8.61 -182.59 -1.57 5.64 16 37 H 0.27 7.07 8.29 -40.82 -0.34 6.73 16 38 H 0.14 2.43 7.54 -52.49 -0.40 2.04 16 39 H 0.14 1.29 6.27 -52.49 -0.33 0.96 16 40 H 0.11 0.76 7.65 -51.93 -0.40 0.36 16 41 H 0.11 0.76 7.65 -51.93 -0.40 0.36 16 42 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 43 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 44 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 392.24 15.07 5.91 5.91 Total: -1.00 -38.50 392.24 -7.01 -45.51 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -6.72 Total: 4.72 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -0.80 Total: 5.27 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 1.16 Total: -37.91 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: -1.53 Total: -37.50 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -38.50 -7.01 -45.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000567438.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.012 kcal (2) G-P(sol) polarization free energy of solvation -38.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds