Wall clock time and date at job start Tue Mar 31 2020 05:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42904 * 109.46903 * 2 1 4 4 C 1.35960 * 117.00020 * 179.97438 * 3 2 1 5 5 C 1.37937 * 119.98406 * 359.72410 * 4 3 2 6 6 C 1.40210 * 119.82524 * 179.79360 * 5 4 3 7 7 C 1.46694 * 120.10780 * 180.25140 * 6 5 4 8 8 N 1.30723 * 120.00282 * 180.22615 * 7 6 5 9 9 N 1.40104 * 120.00315 * 180.02562 * 8 7 6 10 10 C 1.34779 * 120.00393 * 180.02562 * 9 8 7 11 11 O 1.21988 * 119.99981 * 359.97438 * 10 9 8 12 12 C 1.40584 * 120.00114 * 179.97438 * 10 9 8 13 13 H 1.07998 * 120.00024 * 353.71172 * 12 10 9 14 14 C 1.40190 * 120.00049 * 173.70839 * 12 10 9 15 15 N 1.30611 * 119.99995 * 6.28655 * 14 12 10 16 16 Si 1.86795 * 119.99931 * 186.27934 * 14 12 10 17 17 H 1.48496 * 109.47166 * 94.99098 * 16 14 12 18 18 H 1.48504 * 109.46998 * 214.98954 * 16 14 12 19 19 H 1.48498 * 109.47564 * 334.98632 * 16 14 12 20 20 C 1.40352 * 119.79410 * 0.47930 * 6 5 4 21 21 C 1.37591 * 119.96045 * 359.75394 * 20 6 5 22 22 C 1.39080 * 120.18231 * 0.02562 * 21 20 6 23 23 O 1.35732 * 119.89915 * 180.02562 * 22 21 20 24 24 C 1.42905 * 116.99643 * 359.97438 * 23 22 21 25 25 C 1.50700 * 109.46677 * 179.97438 * 24 23 22 26 26 O 1.20820 * 120.00179 * 0.02562 * 25 24 23 27 27 O 1.34236 * 119.99601 * 179.97438 * 25 24 23 28 28 C 1.45204 * 116.99911 * 179.97438 * 27 25 24 29 29 H 1.09003 * 109.46768 * 60.00309 * 1 2 3 30 30 H 1.09004 * 109.47340 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47587 * 300.00331 * 1 2 3 32 32 H 1.09003 * 109.46768 * 119.99691 * 2 1 3 33 33 H 1.08994 * 109.47587 * 239.99669 * 2 1 3 34 34 H 1.08008 * 120.08716 * 0.02562 * 5 4 3 35 35 H 1.08003 * 119.99751 * 0.23165 * 7 6 5 36 36 H 0.96999 * 119.99703 * 359.97438 * 9 8 7 37 37 H 0.96995 * 120.00012 * 179.97438 * 15 14 12 38 38 H 1.07999 * 120.01785 * 179.72518 * 20 6 5 39 39 H 1.07997 * 119.90573 * 180.02562 * 21 20 6 40 40 H 1.09002 * 109.47062 * 299.99933 * 24 23 22 41 41 H 1.09000 * 109.47319 * 59.99674 * 24 23 22 42 42 H 1.09001 * 109.46580 * 300.00433 * 28 27 25 43 43 H 1.08996 * 109.46734 * 59.99993 * 28 27 25 44 44 H 1.08996 * 109.46953 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3541 1.5255 0.0005 5 6 4.1941 0.4314 0.0068 6 6 5.5836 0.6190 0.0030 7 6 6.4827 -0.5401 0.0040 8 7 7.7778 -0.3628 0.0049 9 7 8.6365 -1.4699 0.0054 10 6 9.9718 -1.2872 0.0068 11 8 10.4328 -0.1578 0.0072 12 6 10.8333 -2.3981 0.0078 13 1 10.4295 -3.3945 0.1099 14 6 12.2167 -2.2125 -0.1237 15 7 12.7166 -1.0058 -0.1238 16 14 13.3449 -3.6909 -0.2988 17 1 13.6006 -3.9507 -1.7383 18 1 14.6312 -3.4163 0.3907 19 1 12.7001 -4.8809 0.3121 20 6 6.1118 1.9194 0.0030 21 6 5.2659 3.0046 0.0016 22 6 3.8878 2.8170 0.0007 23 8 3.0587 3.8916 -0.0011 24 6 3.6706 5.1830 -0.0016 25 6 2.6017 6.2453 -0.0044 26 8 1.4356 5.9289 -0.0053 27 8 2.9451 7.5430 -0.0047 28 6 1.8630 8.5112 -0.0080 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8932 -0.5138 0.8901 33 1 1.8934 -0.5138 -0.8899 34 1 3.7826 -0.5672 0.0109 35 1 6.0745 -1.5401 0.0040 36 1 8.2699 -2.3680 0.0054 37 1 13.6737 -0.8774 -0.2144 38 1 7.1815 2.0681 0.0045 39 1 5.6733 4.0048 0.0011 40 1 4.2895 5.2922 0.8890 41 1 4.2916 5.2906 -0.8909 42 1 1.2516 8.3697 -0.8993 43 1 1.2477 8.3713 0.8807 44 1 2.2775 9.5193 -0.0084 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000567438.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:48 Heat of formation + Delta-G solvation = -148.742623 kcal Electronic energy + Delta-G solvation = -29041.305524 eV Core-core repulsion = 24539.312451 eV Total energy + Delta-G solvation = -4501.993074 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 350.140 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.89865 -41.31195 -39.64473 -39.59985 -38.37962 -37.55271 -36.59357 -34.71332 -33.27616 -32.56289 -31.29186 -31.11357 -29.73949 -28.46226 -27.78120 -25.12365 -24.66085 -23.01822 -22.54389 -21.76724 -21.38682 -19.91142 -19.45067 -18.57503 -18.32524 -18.05400 -18.04821 -17.63439 -17.31419 -17.10878 -16.59463 -16.37874 -16.07151 -15.70825 -15.47043 -15.19242 -14.92902 -14.70492 -14.54468 -14.18773 -14.06364 -13.77364 -13.47157 -13.37235 -13.31176 -13.09403 -13.00412 -12.92731 -12.71441 -12.67080 -12.38037 -12.03855 -12.03067 -12.00314 -11.89146 -11.61650 -11.59501 -11.00327 -10.99023 -10.06250 -9.97827 -9.44676 -8.57010 -8.43210 -7.08491 -0.17505 0.35642 0.97225 1.05481 1.36682 1.40284 1.52995 1.58848 2.04344 2.23540 2.35261 2.42639 2.47105 2.81302 3.54379 3.64277 3.74398 3.79615 3.89427 4.00207 4.06915 4.12833 4.13190 4.24209 4.27642 4.28293 4.31200 4.45047 4.53577 4.65914 4.69859 4.81277 4.89502 4.99144 5.14309 5.19045 5.19756 5.27658 5.31943 5.55310 5.57781 5.81869 5.97197 6.03235 6.52421 6.58588 6.68591 6.93775 7.44986 8.41279 8.58936 Molecular weight = 350.14amu Principal moments of inertia in cm(-1) A = 0.012830 B = 0.001891 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.835021 B =14801.561885 C =16946.947482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.040 3.960 3 O -0.324 6.324 4 C 0.095 3.905 5 C -0.138 4.138 6 C -0.041 4.041 7 C 0.066 3.934 8 N -0.256 5.256 9 N -0.593 5.593 10 C 0.544 3.456 11 O -0.615 6.615 12 C -0.562 4.562 13 H 0.096 0.904 14 C 0.031 3.969 15 N -0.799 5.799 16 Si 1.009 2.991 17 H -0.261 1.261 18 H -0.269 1.269 19 H -0.244 1.244 20 C -0.096 4.096 21 C -0.164 4.164 22 C 0.096 3.904 23 O -0.306 6.306 24 C 0.058 3.942 25 C 0.468 3.532 26 O -0.525 6.525 27 O -0.354 6.354 28 C 0.029 3.971 29 H 0.058 0.942 30 H 0.102 0.898 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.168 0.832 35 H 0.142 0.858 36 H 0.385 0.615 37 H 0.282 0.718 38 H 0.119 0.881 39 H 0.167 0.833 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.047 7.928 -0.122 24.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.034 4.034 3 O -0.239 6.239 4 C 0.049 3.951 5 C -0.159 4.159 6 C -0.044 4.044 7 C -0.144 4.144 8 N -0.063 5.063 9 N -0.339 5.339 10 C 0.354 3.646 11 O -0.501 6.501 12 C -0.598 4.598 13 H 0.114 0.886 14 C -0.188 4.188 15 N -0.427 5.427 16 Si 0.827 3.173 17 H -0.185 1.185 18 H -0.194 1.194 19 H -0.167 1.167 20 C -0.117 4.117 21 C -0.182 4.182 22 C 0.050 3.950 23 O -0.220 6.220 24 C -0.018 4.018 25 C 0.311 3.689 26 O -0.413 6.413 27 O -0.270 6.270 28 C -0.064 4.064 29 H 0.077 0.923 30 H 0.121 0.879 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.185 0.815 35 H 0.159 0.841 36 H 0.223 0.777 37 H 0.092 0.908 38 H 0.137 0.863 39 H 0.184 0.816 40 H 0.153 0.847 41 H 0.152 0.848 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -22.429 9.471 -0.121 24.347 hybrid contribution -0.080 -1.409 -0.058 1.413 sum -22.509 8.061 -0.179 23.909 Atomic orbital electron populations 1.21788 0.91863 1.04060 1.02853 1.23134 0.96773 0.80818 1.02703 1.86188 1.17535 1.31131 1.89068 1.18099 0.83590 0.90852 1.02562 1.21213 0.91099 0.98843 1.04793 1.18298 0.91630 0.91503 1.02953 1.24479 0.89713 0.98696 1.01495 1.74901 1.04761 1.17396 1.09258 1.47325 1.05665 1.03889 1.77010 1.17151 0.78862 0.90739 0.77835 1.90660 1.75149 1.27420 1.56825 1.20289 0.92318 0.94178 1.53056 0.88621 1.27135 1.00262 1.00435 0.90995 1.70178 1.14374 1.25465 1.32694 0.84846 0.76342 0.76651 0.79483 1.18520 1.19406 1.16715 1.21254 1.00147 0.91739 0.98522 1.21193 0.89923 1.01279 1.05852 1.18562 0.88857 0.84687 1.02894 1.86047 1.34080 1.12412 1.89434 1.22239 0.92386 0.78904 1.08239 1.23317 0.89311 0.84012 0.72240 1.90714 1.22138 1.83037 1.45454 1.86459 1.41217 1.15556 1.83780 1.23640 0.89073 0.90931 1.02747 0.92289 0.87929 0.92276 0.90622 0.90632 0.81455 0.84062 0.77712 0.90798 0.86339 0.81565 0.84733 0.84751 0.91807 0.91800 0.84415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 10.28 71.98 0.74 -1.21 16 2 C 0.04 0.64 5.46 71.98 0.39 1.04 16 3 O -0.32 -8.04 9.92 -79.18 -0.79 -8.83 16 4 C 0.09 2.40 6.70 22.56 0.15 2.55 16 5 C -0.14 -3.20 8.78 22.68 0.20 -3.00 16 6 C -0.04 -1.19 5.88 -20.08 -0.12 -1.31 16 7 C 0.07 2.14 10.75 87.07 0.94 3.07 16 8 N -0.26 -11.43 10.18 -52.28 -0.53 -11.96 16 9 N -0.59 -28.52 6.26 -180.57 -1.13 -29.65 16 10 C 0.54 32.48 7.64 84.81 0.65 33.13 16 11 O -0.62 -42.79 15.22 -5.28 -0.08 -42.87 16 12 C -0.56 -31.22 9.25 23.32 0.22 -31.00 16 13 H 0.10 4.63 7.86 -2.91 -0.02 4.60 16 14 C 0.03 1.65 5.49 85.35 0.47 2.12 16 15 N -0.80 -47.85 11.73 21.86 0.26 -47.59 16 16 Si 1.01 38.87 29.56 68.60 2.03 40.90 16 17 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 18 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 19 H -0.24 -8.61 7.11 99.48 0.71 -7.90 16 20 C -0.10 -2.88 9.58 22.63 0.22 -2.67 16 21 C -0.16 -3.89 9.01 22.32 0.20 -3.69 16 22 C 0.10 2.43 6.72 22.84 0.15 2.59 16 23 O -0.31 -7.72 9.44 -64.10 -0.60 -8.33 16 24 C 0.06 0.96 5.33 71.24 0.38 1.34 16 25 C 0.47 9.50 8.03 71.24 0.57 10.07 16 26 O -0.52 -14.83 16.25 28.41 0.46 -14.37 16 27 O -0.35 -5.60 10.57 -51.48 -0.54 -6.15 16 28 C 0.03 0.31 10.56 113.37 1.20 1.50 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.84 16 30 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.08 1.00 7.64 -2.39 -0.02 0.98 16 33 H 0.08 1.00 7.67 -2.39 -0.02 0.98 16 34 H 0.17 2.74 6.28 -2.91 -0.02 2.72 16 35 H 0.14 3.48 8.03 -2.91 -0.02 3.46 16 36 H 0.38 15.13 8.61 -213.32 -1.84 13.30 16 37 H 0.28 15.03 8.29 -92.71 -0.77 14.26 16 38 H 0.12 4.22 7.54 -2.91 -0.02 4.20 16 39 H 0.17 2.78 6.27 -2.91 -0.02 2.76 16 40 H 0.14 1.53 7.65 -2.39 -0.02 1.51 16 41 H 0.14 1.53 7.65 -2.39 -0.02 1.51 16 42 H 0.06 0.71 8.13 -2.39 -0.02 0.69 16 43 H 0.06 0.71 8.13 -2.39 -0.02 0.69 16 44 H 0.14 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -90.36 392.24 4.64 -85.72 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: -0.78 Total: 28.60 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: 6.35 Total: 14.53 kcal Atomic # 7 Polarization: -87.80 SS G_CDS: -1.41 Total: -89.21 kcal Atomic # 8 Polarization: -78.99 SS G_CDS: -1.55 Total: -80.55 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.90 kcal Total: -90.36 4.64 -85.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000567438.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.022 kcal (2) G-P(sol) polarization free energy of solvation -90.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds