Wall clock time and date at job start Tue Mar 31 2020 04:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86794 * 120.00126 * 2 1 4 4 H 1.48505 * 109.47204 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47218 * 299.99715 * 3 2 1 6 6 H 1.48498 * 109.47131 * 59.99836 * 3 2 1 7 7 C 1.37881 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99796 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00253 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.47108 * 179.97438 * 9 7 2 11 11 O 1.45190 * 109.47358 * 300.00332 * 9 7 2 12 12 C 1.34719 * 117.00366 * 270.00043 * 11 9 7 13 13 O 1.21488 * 119.99498 * 359.97438 * 12 11 9 14 14 C 1.47655 * 120.00491 * 179.97438 * 12 11 9 15 15 C 1.39669 * 120.13752 * 179.97438 * 14 12 11 16 16 C 1.37879 * 119.86168 * 179.72339 * 15 14 12 17 17 C 1.38522 * 120.13892 * 0.25483 * 16 15 14 18 18 Cl 1.73603 * 119.86673 * 180.02562 * 17 16 15 19 19 C 1.38526 * 120.27545 * 0.03044 * 17 16 15 20 20 C 1.37889 * 120.13364 * 359.96843 * 19 17 16 21 21 C 1.50702 * 109.47000 * 60.00331 * 9 7 2 22 22 C 1.38234 * 120.00729 * 265.00423 * 21 9 7 23 23 C 1.38220 * 120.01455 * 179.97438 * 22 21 9 24 24 C 1.38257 * 120.02424 * 0.03789 * 23 22 21 25 25 C 1.38201 * 120.01454 * 359.97438 * 24 23 22 26 26 C 1.38335 * 120.00754 * 84.72207 * 21 9 7 27 27 Cl 1.73608 * 120.01040 * 359.97438 * 26 21 9 28 28 H 0.96999 * 120.00168 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.07158 * 0.02562 * 15 14 12 30 30 H 1.07999 * 119.93140 * 180.28334 * 16 15 14 31 31 H 1.07994 * 119.93422 * 179.97438 * 19 17 16 32 32 H 1.08002 * 120.06616 * 180.02562 * 20 19 17 33 33 H 1.08002 * 119.99286 * 359.97438 * 22 21 9 34 34 H 1.07996 * 119.98625 * 180.02562 * 23 22 21 35 35 H 1.08006 * 119.99680 * 179.97438 * 24 23 22 36 36 H 1.08009 * 120.00073 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 1 1.9593 -3.3277 0.0015 11 8 0.4166 -2.5753 1.1875 12 6 0.9655 -3.1267 2.2873 13 8 2.1099 -3.5333 2.2562 14 6 0.1764 -3.2370 3.5304 15 6 0.7425 -3.8087 4.6721 16 6 0.0024 -3.9036 5.8315 17 6 -1.3019 -3.4382 5.8640 18 17 -2.2272 -3.5606 7.3278 19 6 -1.8711 -2.8756 4.7333 20 6 -1.1412 -2.7750 3.5678 21 6 0.3841 -2.5799 -1.2284 22 6 -0.9418 -2.1939 -1.1664 23 6 -1.7368 -2.2673 -2.2947 24 6 -1.2067 -2.7275 -3.4857 25 6 0.1187 -3.1140 -3.5490 26 6 0.9166 -3.0347 -2.4214 27 17 2.5838 -3.5121 -2.5020 28 1 -0.4850 0.8400 -0.0004 29 1 1.7596 -4.1712 4.6482 30 1 0.4406 -4.3412 6.7162 31 1 -2.8886 -2.5149 4.7647 32 1 -1.5859 -2.3358 2.6870 33 1 -1.3566 -1.8348 -0.2361 34 1 -2.7725 -1.9652 -2.2458 35 1 -1.8284 -2.7851 -4.3670 36 1 0.5327 -3.4731 -4.4797 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001242540.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:16 Heat of formation + Delta-G solvation = -47.836136 kcal Electronic energy + Delta-G solvation = -25394.391477 eV Core-core repulsion = 21474.233426 eV Total energy + Delta-G solvation = -3920.158051 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 350.026 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.83255 -38.77607 -38.08576 -36.51725 -35.61441 -35.40218 -33.07583 -31.21096 -30.99116 -30.53651 -29.86164 -27.11825 -24.33592 -23.13657 -22.68268 -21.83394 -20.69249 -19.95879 -17.69781 -17.00758 -16.45316 -16.33085 -15.62581 -15.20595 -14.87741 -14.64752 -14.49427 -14.25427 -14.00169 -13.54630 -13.47621 -13.11199 -12.94524 -12.68003 -12.32948 -12.08353 -11.74008 -11.52370 -11.47706 -11.12580 -11.08845 -10.91096 -10.86464 -10.74757 -10.63211 -10.37332 -10.01952 -9.67442 -9.50841 -9.08632 -9.07918 -8.86051 -8.73249 -7.96122 -7.73686 -6.23955 -4.45543 0.75960 1.30198 1.98427 2.01622 2.21496 2.97606 3.05958 3.15913 3.25526 3.31205 3.63343 4.00413 4.23223 4.56374 4.77864 4.83592 5.02065 5.24031 5.31424 5.41770 5.52993 5.63357 5.76884 5.83998 5.94502 6.11914 6.17602 6.29307 6.34798 6.51977 6.55518 6.61382 6.71683 6.86777 7.03492 7.30545 7.42805 7.61240 7.72739 7.77054 7.86090 8.55937 8.86233 9.27707 10.70411 Molecular weight = 350.03amu Principal moments of inertia in cm(-1) A = 0.011731 B = 0.003405 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.214436 B = 8222.202498 C = 8720.371838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.082 3.918 3 Si 0.894 3.106 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.524 4.524 8 H 0.072 0.928 9 C 0.244 3.756 10 H 0.061 0.939 11 O -0.331 6.331 12 C 0.500 3.500 13 O -0.520 6.520 14 C -0.103 4.103 15 C -0.052 4.052 16 C -0.127 4.127 17 C -0.015 4.015 18 Cl -0.075 7.075 19 C -0.126 4.126 20 C -0.047 4.047 21 C -0.026 4.026 22 C -0.035 4.035 23 C -0.140 4.140 24 C -0.133 4.133 25 C -0.133 4.133 26 C -0.033 4.033 27 Cl -0.086 7.086 28 H 0.265 0.735 29 H 0.145 0.855 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.153 0.847 33 H 0.148 0.852 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.216 -5.834 4.967 9.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.125 4.125 3 Si 0.721 3.279 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.560 4.560 8 H 0.090 0.910 9 C 0.192 3.808 10 H 0.079 0.921 11 O -0.246 6.246 12 C 0.344 3.656 13 O -0.412 6.412 14 C -0.104 4.104 15 C -0.071 4.071 16 C -0.145 4.145 17 C -0.042 4.042 18 Cl -0.046 7.046 19 C -0.144 4.144 20 C -0.065 4.065 21 C -0.027 4.027 22 C -0.054 4.054 23 C -0.159 4.159 24 C -0.151 4.151 25 C -0.152 4.152 26 C -0.059 4.059 27 Cl -0.057 7.057 28 H 0.076 0.924 29 H 0.163 0.837 30 H 0.155 0.845 31 H 0.156 0.844 32 H 0.171 0.829 33 H 0.165 0.835 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.970 -5.863 5.018 9.757 hybrid contribution 0.596 1.174 -0.037 1.318 sum -5.373 -4.689 4.981 8.699 Atomic orbital electron populations 1.69913 1.05874 1.26930 1.45737 1.25053 0.94954 0.99539 0.92975 0.86477 0.80623 0.82938 0.77832 1.19335 1.20592 1.20634 1.21273 0.93464 0.89158 1.52100 0.90981 1.19276 0.86435 0.98046 0.77020 0.92149 1.86648 1.47485 1.70135 1.20369 1.20757 0.85172 0.74867 0.84767 1.90738 1.18596 1.46946 1.84887 1.19669 0.94833 1.02641 0.93265 1.21266 1.00315 0.95043 0.90429 1.20936 0.92520 1.02048 0.99030 1.21188 0.93062 1.01801 0.88102 1.98365 1.73588 1.96774 1.35866 1.21056 1.01109 1.00869 0.91409 1.21611 0.92569 0.94222 0.98108 1.19695 0.94255 0.94698 0.94092 1.21127 0.92049 0.92950 0.99253 1.21171 0.99693 1.01465 0.93533 1.20798 0.94572 1.01900 0.97845 1.20673 0.94045 1.03820 0.96674 1.20587 0.85055 1.04841 0.95425 1.98308 1.18436 1.90484 1.98452 0.92443 0.83745 0.84476 0.84429 0.82926 0.83458 0.86971 0.86854 0.86435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.04 9.49 55.43 0.53 -20.52 16 2 C 0.08 2.09 5.24 -17.82 -0.09 1.99 16 3 Si 0.89 20.31 29.54 -169.99 -5.02 15.29 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.52 -13.67 8.91 -34.44 -0.31 -13.97 16 8 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 9 C 0.24 5.90 1.88 -29.03 -0.05 5.84 16 10 H 0.06 1.52 6.16 -51.93 -0.32 1.20 16 11 O -0.33 -7.58 7.36 -40.54 -0.30 -7.88 16 12 C 0.50 10.73 7.86 34.58 0.27 11.00 16 13 O -0.52 -12.27 15.61 -19.26 -0.30 -12.57 16 14 C -0.10 -1.75 5.87 -104.98 -0.62 -2.37 16 15 C -0.05 -0.76 9.59 -39.18 -0.38 -1.13 16 16 C -0.13 -1.54 9.81 -39.61 -0.39 -1.93 16 17 C -0.01 -0.18 6.33 -39.37 -0.25 -0.43 16 18 Cl -0.07 -0.80 28.95 -51.86 -1.50 -2.30 16 19 C -0.13 -1.58 9.81 -39.60 -0.39 -1.97 16 20 C -0.05 -0.70 9.62 -39.17 -0.38 -1.08 16 21 C -0.03 -0.59 4.65 -104.59 -0.49 -1.07 16 22 C -0.03 -0.73 7.45 -39.59 -0.30 -1.02 16 23 C -0.14 -2.51 10.05 -39.58 -0.40 -2.91 16 24 C -0.13 -2.23 10.05 -39.59 -0.40 -2.62 16 25 C -0.13 -2.39 9.83 -39.55 -0.39 -2.78 16 26 C -0.03 -0.67 6.31 -39.50 -0.25 -0.92 16 27 Cl -0.09 -1.69 27.41 -51.86 -1.42 -3.11 16 28 H 0.27 6.31 8.31 -40.82 -0.34 5.97 16 29 H 0.14 2.02 7.65 -52.49 -0.40 1.62 16 30 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 31 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.15 2.31 7.61 -52.49 -0.40 1.91 16 33 H 0.15 3.20 6.33 -52.49 -0.33 2.87 16 34 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 35 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 36 H 0.12 1.82 8.06 -52.48 -0.42 1.39 16 LS Contribution 347.09 15.07 5.23 5.23 Total: -1.00 -27.40 347.09 -10.69 -38.09 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -3.11 Total: 3.15 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -4.79 Total: -15.38 kcal Atomic # 7 Polarization: -21.04 SS G_CDS: 0.53 Total: -20.52 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.60 Total: -20.45 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 17 Polarization: -2.49 SS G_CDS: -2.92 Total: -5.41 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -27.40 -10.69 -38.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001242540.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.745 kcal (2) G-P(sol) polarization free energy of solvation -27.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds