Wall clock time and date at job start Tue Mar 31 2020 04:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86794 * 120.00126 * 2 1 4 4 H 1.48505 * 109.47204 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47218 * 299.99715 * 3 2 1 6 6 H 1.48498 * 109.47131 * 59.99836 * 3 2 1 7 7 C 1.37881 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99796 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00253 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.47108 * 179.97438 * 9 7 2 11 11 O 1.45190 * 109.47358 * 300.00332 * 9 7 2 12 12 C 1.34719 * 117.00366 * 270.00043 * 11 9 7 13 13 O 1.21488 * 119.99498 * 359.97438 * 12 11 9 14 14 C 1.47655 * 120.00491 * 179.97438 * 12 11 9 15 15 C 1.39669 * 120.13752 * 179.97438 * 14 12 11 16 16 C 1.37879 * 119.86168 * 179.72339 * 15 14 12 17 17 C 1.38522 * 120.13892 * 0.25483 * 16 15 14 18 18 Cl 1.73603 * 119.86673 * 180.02562 * 17 16 15 19 19 C 1.38526 * 120.27545 * 0.03044 * 17 16 15 20 20 C 1.37889 * 120.13364 * 359.96843 * 19 17 16 21 21 C 1.50702 * 109.47000 * 60.00331 * 9 7 2 22 22 C 1.38234 * 120.00729 * 265.00423 * 21 9 7 23 23 C 1.38220 * 120.01455 * 179.97438 * 22 21 9 24 24 C 1.38257 * 120.02424 * 0.03789 * 23 22 21 25 25 C 1.38201 * 120.01454 * 359.97438 * 24 23 22 26 26 C 1.38335 * 120.00754 * 84.72207 * 21 9 7 27 27 Cl 1.73608 * 120.01040 * 359.97438 * 26 21 9 28 28 H 0.96999 * 120.00168 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.07158 * 0.02562 * 15 14 12 30 30 H 1.07999 * 119.93140 * 180.28334 * 16 15 14 31 31 H 1.07994 * 119.93422 * 179.97438 * 19 17 16 32 32 H 1.08002 * 120.06616 * 180.02562 * 20 19 17 33 33 H 1.08002 * 119.99286 * 359.97438 * 22 21 9 34 34 H 1.07996 * 119.98625 * 180.02562 * 23 22 21 35 35 H 1.08006 * 119.99680 * 179.97438 * 24 23 22 36 36 H 1.08009 * 120.00073 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 1 1.9593 -3.3277 0.0015 11 8 0.4166 -2.5753 1.1875 12 6 0.9655 -3.1267 2.2873 13 8 2.1099 -3.5333 2.2562 14 6 0.1764 -3.2370 3.5304 15 6 0.7425 -3.8087 4.6721 16 6 0.0024 -3.9036 5.8315 17 6 -1.3019 -3.4382 5.8640 18 17 -2.2272 -3.5606 7.3278 19 6 -1.8711 -2.8756 4.7333 20 6 -1.1412 -2.7750 3.5678 21 6 0.3841 -2.5799 -1.2284 22 6 -0.9418 -2.1939 -1.1664 23 6 -1.7368 -2.2673 -2.2947 24 6 -1.2067 -2.7275 -3.4857 25 6 0.1187 -3.1140 -3.5490 26 6 0.9166 -3.0347 -2.4214 27 17 2.5838 -3.5121 -2.5020 28 1 -0.4850 0.8400 -0.0004 29 1 1.7596 -4.1712 4.6482 30 1 0.4406 -4.3412 6.7162 31 1 -2.8886 -2.5149 4.7647 32 1 -1.5859 -2.3358 2.6870 33 1 -1.3566 -1.8348 -0.2361 34 1 -2.7725 -1.9652 -2.2458 35 1 -1.8284 -2.7851 -4.3670 36 1 0.5327 -3.4731 -4.4797 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001242540.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:16 Heat of formation + Delta-G solvation = -58.200911 kcal Electronic energy + Delta-G solvation = -25394.840927 eV Core-core repulsion = 21474.233426 eV Total energy + Delta-G solvation = -3920.607501 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 350.026 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.34986 -40.16665 -39.51936 -37.53364 -37.19770 -37.07194 -34.91992 -32.64723 -32.15313 -31.90251 -31.34444 -28.87337 -25.89314 -24.68129 -23.80851 -23.30414 -22.17808 -21.52554 -19.16671 -18.67931 -18.00893 -17.71879 -17.04476 -16.94966 -16.31346 -16.21125 -15.95127 -15.63824 -15.42095 -14.87332 -14.61178 -14.49127 -14.41236 -14.16901 -13.94482 -13.57125 -13.18727 -12.98985 -12.90247 -12.59866 -12.53478 -12.47331 -12.30159 -12.18945 -12.15631 -11.86013 -11.63083 -11.38591 -11.27948 -10.87103 -10.75552 -10.15808 -9.86934 -9.48580 -9.30505 -8.12555 -6.42552 -0.45379 0.22470 0.50695 0.73695 0.98930 1.33290 1.38068 1.43536 1.47497 1.63198 2.07838 2.35015 2.68143 3.04349 3.11214 3.69910 3.81863 3.85870 4.16952 4.19260 4.22418 4.37906 4.44046 4.55705 4.64371 4.79856 4.89495 4.92543 5.03607 5.05235 5.08058 5.29869 5.40434 5.55444 5.59970 5.60874 5.77866 5.87227 5.92882 6.10340 6.25908 6.59449 7.09679 7.32511 8.78609 Molecular weight = 350.03amu Principal moments of inertia in cm(-1) A = 0.011731 B = 0.003405 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.214436 B = 8222.202498 C = 8720.371838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.053 3.947 3 Si 0.940 3.060 4 H -0.280 1.280 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.551 4.551 8 H 0.045 0.955 9 C 0.250 3.750 10 H 0.035 0.965 11 O -0.336 6.336 12 C 0.491 3.509 13 O -0.555 6.555 14 C -0.132 4.132 15 C -0.054 4.054 16 C -0.115 4.115 17 C -0.009 4.009 18 Cl -0.051 7.051 19 C -0.117 4.117 20 C -0.050 4.050 21 C -0.055 4.055 22 C -0.050 4.050 23 C -0.137 4.137 24 C -0.119 4.119 25 C -0.132 4.132 26 C -0.053 4.053 27 Cl -0.090 7.090 28 H 0.269 0.731 29 H 0.143 0.857 30 H 0.168 0.832 31 H 0.165 0.835 32 H 0.144 0.856 33 H 0.131 0.869 34 H 0.144 0.856 35 H 0.159 0.841 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.762 -5.650 5.236 11.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.154 4.154 3 Si 0.766 3.234 4 H -0.205 1.205 5 H -0.198 1.198 6 H -0.200 1.200 7 C -0.587 4.587 8 H 0.063 0.937 9 C 0.197 3.803 10 H 0.053 0.947 11 O -0.251 6.251 12 C 0.338 3.662 13 O -0.449 6.449 14 C -0.133 4.133 15 C -0.073 4.073 16 C -0.133 4.133 17 C -0.035 4.035 18 Cl -0.022 7.022 19 C -0.135 4.135 20 C -0.068 4.068 21 C -0.057 4.057 22 C -0.068 4.068 23 C -0.155 4.155 24 C -0.137 4.137 25 C -0.150 4.150 26 C -0.080 4.080 27 Cl -0.062 7.062 28 H 0.078 0.922 29 H 0.161 0.839 30 H 0.186 0.814 31 H 0.182 0.818 32 H 0.162 0.838 33 H 0.149 0.851 34 H 0.161 0.839 35 H 0.176 0.824 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -8.543 -5.682 5.293 11.545 hybrid contribution 1.288 1.032 -0.037 1.651 sum -7.255 -4.650 5.255 10.093 Atomic orbital electron populations 1.69997 1.05989 1.27393 1.45174 1.25489 0.95816 1.01204 0.92850 0.85782 0.79059 0.80391 0.78156 1.20466 1.19752 1.20005 1.21220 0.92435 0.90905 1.54143 0.93654 1.19037 0.86789 0.96179 0.78266 0.94681 1.86623 1.47158 1.70577 1.20700 1.21617 0.85283 0.73725 0.85590 1.90696 1.20212 1.48564 1.85465 1.19534 0.95699 1.06042 0.92052 1.21320 1.00600 0.94857 0.90482 1.21194 0.92307 1.00942 0.98882 1.21335 0.93162 1.00295 0.88756 1.98383 1.72959 1.96537 1.34316 1.21257 1.01921 0.99987 0.90379 1.21539 0.91883 0.94412 0.99004 1.19681 0.95056 0.97128 0.93804 1.21054 0.91893 0.93905 0.99995 1.21513 1.00808 1.00358 0.92803 1.21298 0.94270 0.99299 0.98791 1.21076 0.94437 1.02891 0.96629 1.20872 0.85363 1.05700 0.96019 1.98296 1.18894 1.90527 1.98438 0.92154 0.83918 0.81404 0.81788 0.83814 0.85101 0.83865 0.82384 0.83694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -42.88 9.49 21.45 0.20 -42.67 16 2 C 0.05 2.78 5.24 84.66 0.44 3.23 16 3 Si 0.94 42.45 29.54 68.60 2.03 44.48 16 4 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 5 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 7 C -0.55 -30.38 8.91 25.60 0.23 -30.15 16 8 H 0.05 2.65 7.81 -2.91 -0.02 2.62 16 9 C 0.25 12.83 1.88 29.10 0.05 12.88 16 10 H 0.04 1.92 6.16 -2.38 -0.01 1.90 16 11 O -0.34 -16.37 7.36 -56.29 -0.41 -16.78 16 12 C 0.49 22.53 7.86 70.31 0.55 23.08 16 13 O -0.56 -28.28 15.61 19.88 0.31 -27.96 16 14 C -0.13 -4.67 5.87 -20.10 -0.12 -4.79 16 15 C -0.05 -1.58 9.59 22.53 0.22 -1.36 16 16 C -0.11 -2.56 9.81 22.25 0.22 -2.34 16 17 C -0.01 -0.19 6.33 22.41 0.14 -0.05 16 18 Cl -0.05 -0.93 28.95 -2.72 -0.08 -1.01 16 19 C -0.12 -2.72 9.81 22.26 0.22 -2.50 16 20 C -0.05 -1.50 9.62 22.53 0.22 -1.29 16 21 C -0.06 -2.57 4.65 -19.84 -0.09 -2.66 16 22 C -0.05 -2.08 7.45 22.26 0.17 -1.92 16 23 C -0.14 -4.58 10.05 22.27 0.22 -4.35 16 24 C -0.12 -3.56 10.05 22.27 0.22 -3.33 16 25 C -0.13 -4.46 9.83 22.29 0.22 -4.24 16 26 C -0.05 -2.22 6.31 22.32 0.14 -2.08 16 27 Cl -0.09 -3.69 27.41 -2.72 -0.07 -3.77 16 28 H 0.27 12.79 8.31 -92.71 -0.77 12.02 16 29 H 0.14 4.13 7.65 -2.91 -0.02 4.11 16 30 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 31 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 32 H 0.14 4.52 7.61 -2.91 -0.02 4.50 16 33 H 0.13 5.84 6.33 -2.91 -0.02 5.83 16 34 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 35 H 0.16 3.37 8.06 -2.91 -0.02 3.35 16 36 H 0.15 4.05 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -62.79 347.09 6.16 -56.63 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 1.13 Total: 12.96 kcal Atomic # 6 Polarization: -24.93 SS G_CDS: 3.05 Total: -21.88 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: 0.20 Total: -42.67 kcal Atomic # 8 Polarization: -44.64 SS G_CDS: -0.10 Total: -44.75 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Atomic # 17 Polarization: -4.62 SS G_CDS: -0.15 Total: -4.77 kcal Total: -62.79 6.16 -56.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001242540.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.572 kcal (2) G-P(sol) polarization free energy of solvation -62.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds