Wall clock time and date at job start Tue Mar 31 2020 04:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00000 * 2 1 4 4 H 1.48506 * 109.46895 * 86.24931 * 3 2 1 5 5 H 1.48500 * 109.47196 * 206.24746 * 3 2 1 6 6 H 1.48499 * 109.47189 * 326.25187 * 3 2 1 7 7 C 1.37880 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00296 * 353.08192 * 7 2 1 9 9 C 1.50702 * 120.00124 * 173.08517 * 7 2 1 10 10 H 1.09000 * 109.46947 * 5.25481 * 9 7 2 11 11 O 1.45194 * 109.47037 * 245.25734 * 9 7 2 12 12 C 1.34715 * 117.00180 * 90.00140 * 11 9 7 13 13 O 1.21486 * 120.00276 * 359.97438 * 12 11 9 14 14 C 1.47662 * 120.00105 * 179.97438 * 12 11 9 15 15 C 1.39663 * 120.13540 * 359.72445 * 14 12 11 16 16 C 1.37884 * 119.85969 * 179.81002 * 15 14 12 17 17 C 1.38518 * 120.13726 * 0.44115 * 16 15 14 18 18 Cl 1.73599 * 119.86259 * 179.76314 * 17 16 15 19 19 C 1.38522 * 120.27581 * 359.78954 * 17 16 15 20 20 C 1.37886 * 120.13854 * 359.97438 * 19 17 16 21 21 C 1.50699 * 109.47104 * 125.25138 * 9 7 2 22 22 C 1.38238 * 120.00064 * 93.93366 * 21 9 7 23 23 C 1.38229 * 120.01121 * 179.74750 * 22 21 9 24 24 C 1.38259 * 120.02337 * 0.54670 * 23 22 21 25 25 C 1.38191 * 120.01735 * 359.70683 * 24 23 22 26 26 C 1.38332 * 120.01117 * 274.20774 * 21 9 7 27 27 Cl 1.73594 * 120.01272 * 0.02562 * 26 21 9 28 28 H 0.96998 * 120.00620 * 359.97438 * 1 2 3 29 29 H 1.07995 * 120.07141 * 0.02562 * 15 14 12 30 30 H 1.07999 * 119.93086 * 180.18258 * 16 15 14 31 31 H 1.08006 * 119.93245 * 179.97438 * 19 17 16 32 32 H 1.07998 * 120.06812 * 179.97438 * 20 19 17 33 33 H 1.08001 * 119.99360 * 0.02562 * 22 21 9 34 34 H 1.07997 * 119.98794 * 180.25886 * 23 22 21 35 35 H 1.08003 * 119.99205 * 179.72514 * 24 23 22 36 36 H 1.07993 * 120.01065 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4172 2.0922 1.3971 5 1 3.5841 1.4186 -0.6192 6 1 1.4884 2.6285 -0.7778 7 6 2.0045 -1.1941 -0.0005 8 1 1.4704 -2.1260 0.1117 9 6 3.5033 -1.1988 -0.1577 10 1 3.8712 -0.1728 -0.1633 11 8 3.8568 -1.8465 -1.4081 12 6 3.9499 -1.0612 -2.4987 13 8 3.7411 0.1321 -2.4077 14 6 4.3059 -1.6509 -3.8049 15 6 4.5522 -3.0214 -3.9117 16 6 4.8803 -3.5667 -5.1349 17 6 4.9748 -2.7566 -6.2546 18 17 5.3944 -3.4496 -7.7900 19 6 4.7364 -1.3958 -6.1542 20 6 4.4027 -0.8393 -4.9375 21 6 4.1264 -1.9496 0.9908 22 6 4.4180 -3.2946 0.8603 23 6 4.9944 -3.9822 1.9118 24 6 5.2691 -3.3281 3.0985 25 6 4.9733 -1.9848 3.2319 26 6 4.4015 -1.2945 2.1777 27 17 4.0284 0.3926 2.3450 28 1 -0.4851 0.8400 0.0004 29 1 4.4824 -3.6535 -3.0388 30 1 5.0682 -4.6268 -5.2194 31 1 4.8120 -0.7693 -7.0307 32 1 4.2174 0.2219 -4.8604 33 1 4.1996 -3.8071 -0.0649 34 1 5.2259 -5.0320 1.8080 35 1 5.7154 -3.8669 3.9212 36 1 5.1883 -1.4739 4.1587 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001242541.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:20 Heat of formation + Delta-G solvation = -40.543288 kcal Electronic energy + Delta-G solvation = -25306.523533 eV Core-core repulsion = 21386.681723 eV Total energy + Delta-G solvation = -3919.841809 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 350.026 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.02048 -39.05864 -38.33943 -36.61182 -35.90155 -35.58576 -33.07261 -31.61688 -31.16425 -30.87021 -30.27471 -27.54405 -24.41734 -23.17202 -22.79823 -22.25347 -20.91237 -19.84752 -17.96982 -17.30832 -16.85867 -16.76423 -15.97533 -15.25391 -15.15755 -14.87549 -14.59029 -14.50351 -14.04992 -13.66793 -13.52733 -13.40030 -13.19724 -12.93607 -12.73439 -12.19895 -12.12369 -11.73162 -11.65631 -11.52858 -11.33324 -11.23317 -10.97624 -10.86463 -10.77453 -10.23084 -10.01360 -9.58838 -9.32561 -9.20905 -9.19484 -8.85046 -8.82847 -8.39617 -8.00006 -6.35198 -4.45426 0.64346 1.18860 1.61849 1.74474 1.89904 2.68724 2.92660 3.25924 3.37928 3.45222 3.54488 3.86942 4.10590 4.34479 4.66101 4.73293 4.98897 5.07135 5.19147 5.21427 5.23299 5.36485 5.48756 5.53837 5.81514 5.84104 5.88655 6.04970 6.11004 6.15048 6.28485 6.34952 6.44497 6.58894 6.65751 6.83095 6.94061 7.20925 7.27615 7.46621 8.15773 8.57577 8.72380 9.25572 10.73018 Molecular weight = 350.03amu Principal moments of inertia in cm(-1) A = 0.012468 B = 0.003596 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.199220 B = 7783.744282 C = 9232.011091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.100 3.900 3 Si 0.864 3.136 4 H -0.273 1.273 5 H -0.225 1.225 6 H -0.290 1.290 7 C -0.524 4.524 8 H 0.083 0.917 9 C 0.199 3.801 10 H 0.083 0.917 11 O -0.362 6.362 12 C 0.503 3.497 13 O -0.502 6.502 14 C -0.104 4.104 15 C -0.052 4.052 16 C -0.125 4.125 17 C -0.014 4.014 18 Cl -0.072 7.072 19 C -0.124 4.124 20 C -0.050 4.050 21 C -0.029 4.029 22 C -0.100 4.100 23 C -0.120 4.120 24 C -0.132 4.132 25 C -0.112 4.112 26 C -0.038 4.038 27 Cl -0.064 7.064 28 H 0.271 0.729 29 H 0.149 0.851 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.146 0.854 33 H 0.132 0.868 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.275 -6.680 -5.521 15.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.108 4.108 3 Si 0.693 3.307 4 H -0.200 1.200 5 H -0.149 1.149 6 H -0.218 1.218 7 C -0.559 4.559 8 H 0.101 0.899 9 C 0.147 3.853 10 H 0.101 0.899 11 O -0.279 6.279 12 C 0.346 3.654 13 O -0.392 6.392 14 C -0.105 4.105 15 C -0.070 4.070 16 C -0.144 4.144 17 C -0.041 4.041 18 Cl -0.043 7.043 19 C -0.142 4.142 20 C -0.068 4.068 21 C -0.030 4.030 22 C -0.118 4.118 23 C -0.138 4.138 24 C -0.151 4.151 25 C -0.131 4.131 26 C -0.064 4.064 27 Cl -0.035 7.035 28 H 0.081 0.919 29 H 0.167 0.833 30 H 0.157 0.843 31 H 0.157 0.843 32 H 0.164 0.836 33 H 0.150 0.850 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 12.029 -6.143 -5.558 14.606 hybrid contribution 0.001 0.964 0.005 0.964 sum 12.030 -5.178 -5.553 14.226 Atomic orbital electron populations 1.69889 1.06686 1.28076 1.45452 1.25057 0.94702 0.99482 0.91590 0.86987 0.83088 0.82734 0.77869 1.20031 1.14921 1.21756 1.20908 0.87612 0.95611 1.51762 0.89924 1.20109 0.95961 0.93163 0.76021 0.89947 1.86522 1.79058 1.43809 1.18506 1.20764 0.74365 0.85289 0.84942 1.90844 1.45949 1.16383 1.85993 1.19671 1.03995 0.94366 0.92484 1.21515 0.93677 0.94133 0.97690 1.21038 1.01905 1.00369 0.91048 1.21193 1.02006 0.93777 0.87097 1.98371 1.91698 1.84769 1.29481 1.20973 1.01731 0.93031 0.98512 1.21298 0.94297 1.00991 0.90236 1.19852 0.93996 0.94465 0.94732 1.20966 0.98414 0.93148 0.99295 1.21158 0.99510 0.99656 0.93475 1.20901 1.02275 0.93902 0.97987 1.20885 1.00015 0.94651 0.97557 1.20747 1.03448 0.86453 0.95767 1.98378 1.92809 1.14987 1.97331 0.91892 0.83322 0.84329 0.84314 0.83587 0.84968 0.86129 0.85987 0.85599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.85 13.96 55.43 0.77 -25.08 16 2 C 0.10 2.85 5.47 -17.82 -0.10 2.76 16 3 Si 0.86 22.16 23.18 -169.99 -3.94 18.22 16 4 H -0.27 -6.64 6.17 56.52 0.35 -6.29 16 5 H -0.23 -5.72 4.52 56.52 0.26 -5.46 16 6 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 7 C -0.52 -14.40 9.19 -34.44 -0.32 -14.72 16 8 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 9 C 0.20 4.71 1.77 -29.03 -0.05 4.66 16 10 H 0.08 2.06 2.83 -51.93 -0.15 1.91 16 11 O -0.36 -7.81 7.98 -40.53 -0.32 -8.13 16 12 C 0.50 10.49 7.86 34.58 0.27 10.76 16 13 O -0.50 -11.90 12.81 -19.26 -0.25 -12.15 16 14 C -0.10 -1.68 5.87 -104.98 -0.62 -2.30 16 15 C -0.05 -0.69 9.62 -39.18 -0.38 -1.07 16 16 C -0.12 -1.41 9.81 -39.61 -0.39 -1.80 16 17 C -0.01 -0.16 6.33 -39.37 -0.25 -0.41 16 18 Cl -0.07 -0.72 28.95 -51.86 -1.50 -2.22 16 19 C -0.12 -1.44 9.81 -39.61 -0.39 -1.83 16 20 C -0.05 -0.70 9.59 -39.17 -0.38 -1.08 16 21 C -0.03 -0.61 5.05 -104.59 -0.53 -1.14 16 22 C -0.10 -1.76 9.35 -39.58 -0.37 -2.13 16 23 C -0.12 -1.74 10.05 -39.58 -0.40 -2.13 16 24 C -0.13 -1.85 10.04 -39.59 -0.40 -2.25 16 25 C -0.11 -1.79 9.83 -39.55 -0.39 -2.18 16 26 C -0.04 -0.73 6.31 -39.50 -0.25 -0.98 16 27 Cl -0.06 -1.31 23.16 -51.86 -1.20 -2.52 16 28 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 29 H 0.15 1.84 7.61 -52.49 -0.40 1.44 16 30 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.14 1.28 8.06 -52.48 -0.42 0.86 16 32 H 0.15 2.03 7.65 -52.49 -0.40 1.63 16 33 H 0.13 2.19 7.37 -52.49 -0.39 1.80 16 34 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 35 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 36 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 335.90 15.07 5.06 5.06 Total: -1.00 -31.22 335.90 -9.50 -40.72 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -3.21 Total: 1.92 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: -4.92 Total: -15.82 kcal Atomic # 7 Polarization: -25.85 SS G_CDS: 0.77 Total: -25.08 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.57 Total: -20.28 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -3.94 Total: 18.22 kcal Atomic # 17 Polarization: -2.04 SS G_CDS: -2.70 Total: -4.74 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.22 -9.50 -40.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001242541.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.179 kcal (2) G-P(sol) polarization free energy of solvation -31.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds