Wall clock time and date at job start Tue Mar 31 2020 04:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00000 * 2 1 4 4 H 1.48506 * 109.46895 * 86.24931 * 3 2 1 5 5 H 1.48500 * 109.47196 * 206.24746 * 3 2 1 6 6 H 1.48499 * 109.47189 * 326.25187 * 3 2 1 7 7 C 1.37880 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00296 * 353.08192 * 7 2 1 9 9 C 1.50702 * 120.00124 * 173.08517 * 7 2 1 10 10 H 1.09000 * 109.46947 * 5.25481 * 9 7 2 11 11 O 1.45194 * 109.47037 * 245.25734 * 9 7 2 12 12 C 1.34715 * 117.00180 * 90.00140 * 11 9 7 13 13 O 1.21486 * 120.00276 * 359.97438 * 12 11 9 14 14 C 1.47662 * 120.00105 * 179.97438 * 12 11 9 15 15 C 1.39663 * 120.13540 * 359.72445 * 14 12 11 16 16 C 1.37884 * 119.85969 * 179.81002 * 15 14 12 17 17 C 1.38518 * 120.13726 * 0.44115 * 16 15 14 18 18 Cl 1.73599 * 119.86259 * 179.76314 * 17 16 15 19 19 C 1.38522 * 120.27581 * 359.78954 * 17 16 15 20 20 C 1.37886 * 120.13854 * 359.97438 * 19 17 16 21 21 C 1.50699 * 109.47104 * 125.25138 * 9 7 2 22 22 C 1.38238 * 120.00064 * 93.93366 * 21 9 7 23 23 C 1.38229 * 120.01121 * 179.74750 * 22 21 9 24 24 C 1.38259 * 120.02337 * 0.54670 * 23 22 21 25 25 C 1.38191 * 120.01735 * 359.70683 * 24 23 22 26 26 C 1.38332 * 120.01117 * 274.20774 * 21 9 7 27 27 Cl 1.73594 * 120.01272 * 0.02562 * 26 21 9 28 28 H 0.96998 * 120.00620 * 359.97438 * 1 2 3 29 29 H 1.07995 * 120.07141 * 0.02562 * 15 14 12 30 30 H 1.07999 * 119.93086 * 180.18258 * 16 15 14 31 31 H 1.08006 * 119.93245 * 179.97438 * 19 17 16 32 32 H 1.07998 * 120.06812 * 179.97438 * 20 19 17 33 33 H 1.08001 * 119.99360 * 0.02562 * 22 21 9 34 34 H 1.07997 * 119.98794 * 180.25886 * 23 22 21 35 35 H 1.08003 * 119.99205 * 179.72514 * 24 23 22 36 36 H 1.07993 * 120.01065 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4172 2.0922 1.3971 5 1 3.5841 1.4186 -0.6192 6 1 1.4884 2.6285 -0.7778 7 6 2.0045 -1.1941 -0.0005 8 1 1.4704 -2.1260 0.1117 9 6 3.5033 -1.1988 -0.1577 10 1 3.8712 -0.1728 -0.1633 11 8 3.8568 -1.8465 -1.4081 12 6 3.9499 -1.0612 -2.4987 13 8 3.7411 0.1321 -2.4077 14 6 4.3059 -1.6509 -3.8049 15 6 4.5522 -3.0214 -3.9117 16 6 4.8803 -3.5667 -5.1349 17 6 4.9748 -2.7566 -6.2546 18 17 5.3944 -3.4496 -7.7900 19 6 4.7364 -1.3958 -6.1542 20 6 4.4027 -0.8393 -4.9375 21 6 4.1264 -1.9496 0.9908 22 6 4.4180 -3.2946 0.8603 23 6 4.9944 -3.9822 1.9118 24 6 5.2691 -3.3281 3.0985 25 6 4.9733 -1.9848 3.2319 26 6 4.4015 -1.2945 2.1777 27 17 4.0284 0.3926 2.3450 28 1 -0.4851 0.8400 0.0004 29 1 4.4824 -3.6535 -3.0388 30 1 5.0682 -4.6268 -5.2194 31 1 4.8120 -0.7693 -7.0307 32 1 4.2174 0.2219 -4.8604 33 1 4.1996 -3.8071 -0.0649 34 1 5.2259 -5.0320 1.8080 35 1 5.7154 -3.8669 3.9212 36 1 5.1883 -1.4739 4.1587 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001242541.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:19 Heat of formation + Delta-G solvation = -57.252641 kcal Electronic energy + Delta-G solvation = -25307.248105 eV Core-core repulsion = 21386.681723 eV Total energy + Delta-G solvation = -3920.566381 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 350.026 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.52780 -40.32667 -39.65329 -37.58397 -37.39918 -37.24141 -35.08868 -33.20071 -32.20502 -32.02988 -31.57258 -29.30190 -25.94972 -24.68099 -23.85858 -23.54264 -22.26966 -21.40858 -19.69473 -19.01987 -18.39936 -18.01858 -17.29908 -16.87456 -16.41908 -16.25843 -16.09981 -15.83019 -15.48050 -14.88772 -14.79597 -14.66757 -14.58613 -14.53497 -14.32002 -13.88391 -13.40334 -13.23489 -13.14064 -12.84345 -12.61175 -12.52716 -12.39900 -12.17547 -12.13776 -11.87222 -11.78848 -11.38264 -11.14700 -11.08271 -10.87723 -10.18568 -9.90636 -9.73047 -9.48085 -8.54737 -6.65610 -0.50420 0.19713 0.29847 0.43694 0.97615 1.09295 1.19790 1.40303 1.49565 1.54655 1.83899 2.22732 2.62881 2.78548 2.95037 3.61060 3.71546 3.81712 3.98890 4.12243 4.13457 4.19794 4.30424 4.41664 4.52136 4.59050 4.64103 4.81563 4.88312 4.97833 5.04957 5.10538 5.20870 5.26529 5.39609 5.52675 5.54717 5.57320 5.75026 5.99338 6.04987 6.46153 6.89304 7.10255 8.58153 Molecular weight = 350.03amu Principal moments of inertia in cm(-1) A = 0.012468 B = 0.003596 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.199220 B = 7783.744282 C = 9232.011091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.061 3.939 3 Si 0.907 3.093 4 H -0.257 1.257 5 H -0.226 1.226 6 H -0.301 1.301 7 C -0.523 4.523 8 H 0.047 0.953 9 C 0.207 3.793 10 H 0.067 0.933 11 O -0.356 6.356 12 C 0.494 3.506 13 O -0.540 6.540 14 C -0.134 4.134 15 C -0.050 4.050 16 C -0.115 4.115 17 C -0.008 4.008 18 Cl -0.051 7.051 19 C -0.116 4.116 20 C -0.056 4.056 21 C -0.069 4.069 22 C -0.109 4.109 23 C -0.107 4.107 24 C -0.113 4.113 25 C -0.113 4.113 26 C -0.059 4.059 27 Cl -0.087 7.087 28 H 0.272 0.728 29 H 0.155 0.845 30 H 0.170 0.830 31 H 0.166 0.834 32 H 0.139 0.861 33 H 0.134 0.866 34 H 0.164 0.836 35 H 0.170 0.830 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.162 -9.462 -5.798 18.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.143 4.143 3 Si 0.735 3.265 4 H -0.183 1.183 5 H -0.150 1.150 6 H -0.229 1.229 7 C -0.559 4.559 8 H 0.065 0.935 9 C 0.154 3.846 10 H 0.084 0.916 11 O -0.273 6.273 12 C 0.340 3.660 13 O -0.432 6.432 14 C -0.135 4.135 15 C -0.068 4.068 16 C -0.133 4.133 17 C -0.035 4.035 18 Cl -0.021 7.021 19 C -0.134 4.134 20 C -0.075 4.075 21 C -0.070 4.070 22 C -0.128 4.128 23 C -0.125 4.125 24 C -0.130 4.130 25 C -0.131 4.131 26 C -0.085 4.085 27 Cl -0.059 7.059 28 H 0.081 0.919 29 H 0.173 0.827 30 H 0.188 0.812 31 H 0.183 0.817 32 H 0.157 0.843 33 H 0.152 0.848 34 H 0.181 0.819 35 H 0.188 0.812 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 14.944 -8.947 -5.836 18.369 hybrid contribution -0.730 1.571 -0.015 1.733 sum 14.213 -7.376 -5.851 17.049 Atomic orbital electron populations 1.69980 1.07875 1.28563 1.48753 1.25597 0.95082 1.01876 0.91730 0.86341 0.81861 0.79874 0.78465 1.18292 1.15021 1.22930 1.20998 0.89997 0.93831 1.51081 0.93497 1.19801 0.93738 0.93523 0.77495 0.91551 1.86460 1.79116 1.43291 1.18426 1.21684 0.73200 0.85058 0.86058 1.90805 1.47927 1.17952 1.86559 1.19495 1.07589 0.95986 0.90418 1.21595 0.93309 0.92812 0.99070 1.21309 1.00323 1.01822 0.89849 1.21370 1.00385 0.93747 0.88024 1.98389 1.91339 1.84389 1.28032 1.21183 1.00425 0.93657 0.98159 1.21320 0.94761 1.00699 0.90674 1.19790 0.97170 0.95976 0.94106 1.21142 0.98828 0.91983 1.00823 1.21624 0.97127 1.01456 0.92275 1.21493 0.99750 0.92900 0.98893 1.21281 0.98841 0.95685 0.97311 1.21021 1.05153 0.85602 0.96734 1.98351 1.93202 1.17012 1.97290 0.91903 0.82720 0.81229 0.81685 0.84300 0.84780 0.81851 0.81211 0.83086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.63 13.96 21.45 0.30 -57.33 16 2 C 0.06 3.64 5.47 84.66 0.46 4.10 16 3 Si 0.91 48.19 23.18 68.60 1.59 49.78 16 4 H -0.26 -12.71 6.17 99.48 0.61 -12.10 16 5 H -0.23 -11.98 4.52 99.48 0.45 -11.53 16 6 H -0.30 -16.26 7.11 99.48 0.71 -15.55 16 7 C -0.52 -30.38 9.19 25.60 0.24 -30.15 16 8 H 0.05 2.99 8.06 -2.91 -0.02 2.96 16 9 C 0.21 10.21 1.77 29.10 0.05 10.26 16 10 H 0.07 3.48 2.83 -2.39 -0.01 3.47 16 11 O -0.36 -16.01 7.98 -56.25 -0.45 -16.46 16 12 C 0.49 21.55 7.86 70.31 0.55 22.10 16 13 O -0.54 -27.05 12.81 19.88 0.25 -26.79 16 14 C -0.13 -4.39 5.87 -20.10 -0.12 -4.50 16 15 C -0.05 -1.27 9.62 22.53 0.22 -1.05 16 16 C -0.11 -2.26 9.81 22.25 0.22 -2.04 16 17 C -0.01 -0.17 6.33 22.40 0.14 -0.02 16 18 Cl -0.05 -0.84 28.95 -2.72 -0.08 -0.92 16 19 C -0.12 -2.46 9.81 22.25 0.22 -2.24 16 20 C -0.06 -1.58 9.59 22.53 0.22 -1.36 16 21 C -0.07 -2.91 5.05 -19.84 -0.10 -3.01 16 22 C -0.11 -3.71 9.35 22.27 0.21 -3.50 16 23 C -0.11 -2.65 10.05 22.27 0.22 -2.43 16 24 C -0.11 -2.59 10.04 22.26 0.22 -2.37 16 25 C -0.11 -3.27 9.83 22.29 0.22 -3.05 16 26 C -0.06 -2.28 6.31 22.33 0.14 -2.13 16 27 Cl -0.09 -3.64 23.16 -2.72 -0.06 -3.71 16 28 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 29 H 0.16 3.69 7.61 -2.91 -0.02 3.67 16 30 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 31 H 0.17 2.59 8.06 -2.91 -0.02 2.56 16 32 H 0.14 4.03 7.65 -2.91 -0.02 4.00 16 33 H 0.13 4.35 7.37 -2.91 -0.02 4.33 16 34 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 35 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 36 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -74.26 335.90 5.45 -68.80 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: 0.79 Total: 8.02 kcal Atomic # 6 Polarization: -24.51 SS G_CDS: 3.11 Total: -21.40 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: 0.30 Total: -57.33 kcal Atomic # 8 Polarization: -43.06 SS G_CDS: -0.19 Total: -43.25 kcal Atomic # 14 Polarization: 48.19 SS G_CDS: 1.59 Total: 49.78 kcal Atomic # 17 Polarization: -4.48 SS G_CDS: -0.14 Total: -4.63 kcal Total: -74.26 5.45 -68.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001242541.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.552 kcal (2) G-P(sol) polarization free energy of solvation -74.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds