Wall clock time and date at job start Tue Mar 31 2020 05:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47019 * 2 1 4 4 N 1.46498 * 109.47089 * 179.97438 * 3 2 1 5 5 C 1.36292 * 119.00991 * 270.01797 * 4 3 2 6 6 S 1.76193 * 118.27737 * 359.97433 * 5 4 3 7 7 C 1.76201 * 99.99947 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99940 * 359.97438 * 7 6 5 9 9 C 1.38733 * 119.99642 * 179.97438 * 7 6 5 10 10 N 1.31567 * 119.99743 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 120.00270 * 0.02562 * 9 7 6 12 12 H 1.48492 * 109.47199 * 90.00047 * 11 9 7 13 13 H 1.48507 * 109.47016 * 210.00135 * 11 9 7 14 14 H 1.48495 * 109.46863 * 329.99699 * 11 9 7 15 15 N 1.31980 * 123.44660 * 179.97438 * 5 4 3 16 16 C 1.34785 * 118.00371 * 359.95441 * 15 5 4 17 17 S 1.74621 * 128.79387 * 180.02562 * 16 15 5 18 18 C 1.75809 * 92.36636 * 179.97438 * 17 16 15 19 19 C 1.33968 * 111.41152 * 0.03638 * 18 17 16 20 20 C 1.39867 * 121.53738 * 0.04845 * 16 15 5 21 21 C 1.35516 * 119.01245 * 89.99844 * 4 3 2 22 22 O 1.21888 * 122.19197 * 0.03113 * 21 4 3 23 23 C 1.52345 * 123.13184 * 180.02562 * 19 18 17 24 24 C 1.52932 * 108.95047 * 342.69567 * 23 19 18 25 25 C 1.53176 * 109.10081 * 50.94558 * 24 23 19 26 26 C 1.51791 * 124.23076 * 180.02562 * 18 17 16 27 27 H 1.08997 * 109.47387 * 300.00438 * 1 2 3 28 28 H 1.09001 * 109.47053 * 60.00097 * 1 2 3 29 29 H 1.08998 * 109.46857 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47302 * 240.00325 * 2 1 3 31 31 H 1.08997 * 109.47146 * 119.99419 * 2 1 3 32 32 H 1.09005 * 109.47258 * 59.99873 * 3 2 1 33 33 H 1.09001 * 109.47129 * 299.99857 * 3 2 1 34 34 H 0.96999 * 120.00396 * 179.97438 * 10 9 7 35 35 H 1.09004 * 109.54977 * 222.85923 * 23 19 18 36 36 H 1.09006 * 109.56473 * 102.54209 * 23 19 18 37 37 H 1.08994 * 109.52831 * 291.06046 * 24 23 19 38 38 H 1.09001 * 109.58838 * 170.86671 * 24 23 19 39 39 H 1.09001 * 109.57165 * 169.68691 * 25 24 23 40 40 H 1.09009 * 109.67365 * 49.38000 * 25 24 23 41 41 H 1.08996 * 109.57402 * 283.18148 * 26 18 17 42 42 H 1.09004 * 109.56721 * 43.54380 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1654 1.4424 1.1928 6 16 3.2126 1.4428 2.6749 7 6 4.5068 1.4416 3.8706 8 1 5.5381 1.4405 3.5501 9 6 4.2008 1.4421 5.2238 10 7 5.1672 1.4407 6.1167 11 14 2.4170 1.4434 5.7782 12 1 1.9434 0.0437 5.9254 13 1 2.3045 2.1439 7.0828 14 1 1.5850 2.1438 4.7670 15 7 5.4812 1.4419 1.2955 16 6 6.2047 1.4406 0.1583 17 16 7.9403 1.4391 -0.0342 18 6 7.8188 1.4373 -1.7881 19 6 6.5408 1.4387 -2.1898 20 6 5.5916 1.4408 -1.0989 21 6 4.1627 1.4424 -1.1842 22 8 3.5760 1.4427 -2.2526 23 6 6.1289 1.4371 -3.6566 24 6 7.3249 1.8642 -4.5087 25 6 8.5426 1.0189 -4.1228 26 6 9.0117 1.4349 -2.7267 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 4.9534 1.4415 7.0628 35 1 5.3065 2.1368 -3.8053 36 1 5.8140 0.4345 -3.9462 37 1 7.5413 2.9175 -4.3308 38 1 7.0951 1.7122 -5.5633 39 1 9.3448 1.1846 -4.8420 40 1 8.2698 -0.0365 -4.1170 41 1 9.4448 2.4342 -2.7695 42 1 9.7581 0.7268 -2.3665 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003362874.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:19 Heat of formation + Delta-G solvation = -28.598987 kcal Electronic energy + Delta-G solvation = -26275.167471 eV Core-core repulsion = 22663.889959 eV Total energy + Delta-G solvation = -3611.277513 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 350.086 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.54280 -39.54392 -38.65333 -37.13435 -34.83965 -34.58605 -33.55533 -31.69776 -29.94252 -28.30981 -27.89493 -25.88470 -25.39435 -23.72257 -23.03595 -22.43980 -20.82455 -19.61691 -19.21403 -18.76665 -18.12193 -17.45997 -17.20819 -17.07109 -16.20665 -15.94047 -15.88451 -15.55934 -14.97450 -14.78071 -14.63988 -14.54362 -14.46429 -13.91876 -13.77252 -13.76109 -13.64016 -13.40034 -13.19642 -13.10500 -13.02705 -12.58198 -12.54107 -12.12488 -12.08163 -11.79332 -11.75413 -11.68759 -11.33511 -11.26258 -11.24540 -11.03350 -10.90698 -10.76026 -9.92605 -9.47995 -8.64430 -8.58248 -6.44201 -0.85050 0.07908 0.34019 0.51181 0.93462 0.98781 1.30010 1.32037 1.38412 1.50235 2.10446 2.26426 2.35244 2.81459 3.27506 3.56260 3.70345 3.79142 3.85035 3.92444 4.03650 4.16388 4.18513 4.30542 4.35900 4.43029 4.48568 4.57293 4.63835 4.78098 4.82371 4.92727 4.96692 5.00738 5.07262 5.09548 5.13128 5.19563 5.29115 5.38080 5.44497 5.46422 5.58662 5.68123 6.37695 6.49768 6.62695 6.76622 8.53945 Molecular weight = 350.09amu Principal moments of inertia in cm(-1) A = 0.012757 B = 0.004031 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.385165 B = 6943.644210 C = 8953.595913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.135 4.135 3 C 0.080 3.920 4 N -0.520 5.520 5 C 0.341 3.659 6 S 0.145 5.855 7 C -0.564 4.564 8 H 0.087 0.913 9 C 0.053 3.947 10 N -0.899 5.899 11 Si 0.900 3.100 12 H -0.249 1.249 13 H -0.254 1.254 14 H -0.211 1.211 15 N -0.515 5.515 16 C 0.072 3.928 17 S 0.173 5.827 18 C -0.206 4.206 19 C -0.045 4.045 20 C -0.292 4.292 21 C 0.568 3.432 22 O -0.541 6.541 23 C -0.049 4.049 24 C -0.115 4.115 25 C -0.110 4.110 26 C -0.040 4.040 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.283 0.717 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.063 0.937 41 H 0.093 0.907 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.702 -0.584 -16.612 16.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.174 4.174 3 C -0.041 4.041 4 N -0.242 5.242 5 C -0.030 4.030 6 S 0.385 5.615 7 C -0.712 4.712 8 H 0.105 0.895 9 C -0.155 4.155 10 N -0.534 5.534 11 Si 0.719 3.281 12 H -0.173 1.173 13 H -0.178 1.178 14 H -0.135 1.135 15 N -0.245 5.245 16 C -0.169 4.169 17 S 0.438 5.562 18 C -0.324 4.324 19 C -0.056 4.056 20 C -0.313 4.313 21 C 0.364 3.636 22 O -0.421 6.421 23 C -0.088 4.088 24 C -0.152 4.152 25 C -0.149 4.149 26 C -0.079 4.079 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.108 0.892 39 H 0.119 0.881 40 H 0.082 0.918 41 H 0.112 0.888 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.511 -0.569 -15.041 15.128 hybrid contribution -0.383 -0.013 -0.486 0.619 sum -1.894 -0.582 -15.527 15.653 Atomic orbital electron populations 1.21648 0.91616 1.03337 1.03144 1.21834 0.99121 0.94203 1.02240 1.22407 0.75148 1.00739 1.05855 1.46511 1.10634 1.62190 1.04878 1.25780 0.92942 0.92491 0.91802 1.82355 1.07860 1.82010 0.89241 1.22984 0.95927 1.59384 0.92899 0.89456 1.25717 1.02760 0.91974 0.95039 1.69987 1.35020 1.45711 1.02639 0.86151 0.78812 0.81347 0.81770 1.17313 1.17805 1.13455 1.70354 1.01512 1.28341 1.24290 1.24321 1.01581 0.99007 0.91988 1.83674 0.95911 1.74472 1.02134 1.24964 0.98821 1.12976 0.95622 1.20113 0.90038 0.99852 0.95551 1.20841 0.94349 1.22238 0.93862 1.16884 0.87084 0.76869 0.82739 1.90790 1.71217 1.53249 1.26889 1.20540 0.98902 1.01961 0.87431 1.21590 0.93725 1.00227 0.99680 1.21588 0.98337 0.99897 0.95046 1.20508 0.91575 1.03538 0.92313 0.91102 0.91460 0.90987 0.92615 0.91722 0.87440 0.87278 0.90703 0.91577 0.90944 0.91543 0.89241 0.88090 0.91788 0.88845 0.89138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.91 71.98 0.71 -1.94 16 2 C -0.14 -3.60 6.26 30.60 0.19 -3.40 16 3 C 0.08 2.38 4.82 86.38 0.42 2.80 16 4 N -0.52 -19.97 2.62 -646.49 -1.69 -21.67 16 5 C 0.34 14.89 7.74 179.43 1.39 16.27 16 6 S 0.14 6.14 17.13 -56.49 -0.97 5.18 16 7 C -0.56 -30.56 9.76 67.94 0.66 -29.90 16 8 H 0.09 5.44 6.69 -2.91 -0.02 5.42 16 9 C 0.05 2.82 5.50 84.85 0.47 3.29 16 10 N -0.90 -51.21 13.96 21.63 0.30 -50.91 16 11 Si 0.90 36.34 27.74 68.60 1.90 38.24 16 12 H -0.25 -9.64 7.11 99.48 0.71 -8.94 16 13 H -0.25 -9.91 7.11 99.48 0.71 -9.21 16 14 H -0.21 -7.54 6.74 99.48 0.67 -6.87 16 15 N -0.52 -24.79 8.61 -190.15 -1.64 -26.43 16 16 C 0.07 3.10 7.49 84.63 0.63 3.73 16 17 S 0.17 6.03 23.16 -56.49 -1.31 4.72 16 18 C -0.21 -6.04 6.30 25.06 0.16 -5.88 16 19 C -0.05 -1.50 5.93 -18.68 -0.11 -1.61 16 20 C -0.29 -11.80 6.01 -20.03 -0.12 -11.92 16 21 C 0.57 22.96 7.59 85.36 0.65 23.61 16 22 O -0.54 -21.87 15.11 -4.95 -0.07 -21.94 16 23 C -0.05 -1.34 5.33 30.35 0.16 -1.17 16 24 C -0.11 -2.13 5.90 30.63 0.18 -1.95 16 25 C -0.11 -1.74 5.94 30.67 0.18 -1.56 16 26 C -0.04 -0.77 6.23 30.21 0.19 -0.58 16 27 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 29 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.06 1.86 7.95 -2.39 -0.02 1.84 16 32 H 0.11 2.96 6.37 -2.39 -0.02 2.94 16 33 H 0.11 3.04 7.45 -2.39 -0.02 3.02 16 34 H 0.28 14.70 8.31 -92.71 -0.77 13.93 16 35 H 0.07 2.01 7.28 -2.38 -0.02 2.00 16 36 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 37 H 0.07 1.23 8.10 -2.39 -0.02 1.21 16 38 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.10 1.03 8.14 -2.39 -0.02 1.02 16 40 H 0.06 1.08 8.11 -2.38 -0.02 1.07 16 41 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 Total: -1.00 -67.57 363.52 3.29 -64.27 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 1.01 Total: 18.77 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: 5.76 Total: -10.23 kcal Atomic # 7 Polarization: -95.98 SS G_CDS: -3.03 Total: -99.01 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.07 Total: -21.94 kcal Atomic # 14 Polarization: 36.34 SS G_CDS: 1.90 Total: 38.24 kcal Atomic # 16 Polarization: 12.17 SS G_CDS: -2.28 Total: 9.90 kcal Total: -67.57 3.29 -64.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003362874.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.672 kcal (2) G-P(sol) polarization free energy of solvation -67.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds