Wall clock time and date at job start Tue Mar 31 2020 05:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35052 * 119.46471 * 2 1 4 4 C 1.41454 * 121.12925 * 0.02874 * 3 2 1 5 5 O 1.21680 * 120.00443 * 101.02408 * 4 3 2 6 6 O 1.34949 * 119.99761 * 281.02002 * 4 3 2 7 7 C 1.42905 * 116.99754 * 174.71140 * 6 4 3 8 8 C 1.50700 * 109.46736 * 184.80488 * 7 6 4 9 9 H 1.08001 * 120.00167 * 5.12083 * 8 7 6 10 10 C 1.37884 * 120.00021 * 185.11269 * 8 7 6 11 11 N 1.31504 * 120.00074 * 180.02562 * 10 8 7 12 12 Si 1.86804 * 119.99573 * 0.02562 * 10 8 7 13 13 H 1.48502 * 109.46934 * 89.99841 * 12 10 8 14 14 H 1.48499 * 109.46834 * 209.99694 * 12 10 8 15 15 H 1.48496 * 109.47173 * 329.99606 * 12 10 8 16 16 C 1.51520 * 117.73756 * 180.02562 * 3 2 1 17 17 H 1.09000 * 107.95477 * 238.11505 * 16 3 2 18 18 C 1.50701 * 107.95338 * 121.84694 * 16 3 2 19 19 C 1.38233 * 120.00990 * 267.08564 * 18 16 3 20 20 C 1.38214 * 120.01709 * 179.74899 * 19 18 16 21 21 C 1.38265 * 120.02292 * 0.55027 * 20 19 18 22 22 C 1.38187 * 120.01668 * 359.70425 * 21 20 19 23 23 C 1.38335 * 120.00559 * 87.36470 * 18 16 3 24 24 Cl 1.73596 * 120.01370 * 359.97438 * 23 18 16 25 25 N 1.47256 * 116.91366 * 359.97438 * 16 3 2 26 26 C 1.34701 * 118.46400 * 0.06308 * 25 16 3 27 27 O 1.21565 * 118.94198 * 179.97438 * 26 25 16 28 28 N 1.33895 * 122.13633 * 359.93543 * 26 25 16 29 29 H 1.08994 * 109.47585 * 93.50309 * 1 2 3 30 30 H 1.08997 * 109.46941 * 213.51027 * 1 2 3 31 31 H 1.09003 * 109.47099 * 333.50509 * 1 2 3 32 32 H 1.08995 * 109.47395 * 304.80635 * 7 6 4 33 33 H 1.09004 * 109.47109 * 64.81031 * 7 6 4 34 34 H 0.97007 * 120.00128 * 179.97438 * 11 10 8 35 35 H 1.08003 * 119.98706 * 0.02562 * 19 18 16 36 36 H 1.08004 * 119.98995 * 180.30160 * 20 19 18 37 37 H 1.08012 * 119.99256 * 179.72765 * 21 20 19 38 38 H 1.07997 * 120.00806 * 180.02562 * 22 21 20 39 39 H 0.97006 * 120.78972 * 180.02562 * 25 16 3 40 40 H 0.96996 * 118.16569 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1713 1.1758 0.0000 4 6 1.4768 2.4081 0.0006 5 8 1.3540 3.0369 1.0351 6 8 0.9504 2.8865 -1.1462 7 6 0.1637 4.0758 -1.0524 8 6 -0.4331 4.3908 -2.3999 9 1 -0.3006 3.7044 -3.2230 10 6 -1.1486 5.5554 -2.5818 11 7 -1.6698 5.8301 -3.7575 12 14 -1.3774 6.7429 -1.1581 13 1 -0.2618 7.7230 -1.1468 14 1 -2.6668 7.4624 -1.3161 15 1 -1.3856 5.9874 0.1203 16 6 3.6858 1.1302 -0.0006 17 1 4.0385 1.6673 0.8798 18 6 4.1724 1.8726 -1.2184 19 6 4.4224 1.1866 -2.3922 20 6 4.8638 1.8681 -3.5108 21 6 5.0664 3.2346 -3.4531 22 6 4.8219 3.9207 -2.2788 23 6 4.3746 3.2398 -1.1602 24 17 4.0672 4.1010 0.3154 25 7 4.3125 -0.2024 -0.0005 26 6 3.5141 -1.2873 -0.0013 27 8 4.0222 -2.3916 -0.0017 28 7 2.1788 -1.1889 -0.0008 29 1 -0.3634 -0.0628 -1.0257 30 1 -0.3633 -0.8568 0.5673 31 1 -0.3633 0.9198 0.4585 32 1 -0.6359 3.9263 -0.3269 33 1 0.7949 4.9047 -0.7319 34 1 -2.1734 6.6492 -3.8854 35 1 4.2685 0.1185 -2.4365 36 1 5.0543 1.3324 -4.4290 37 1 5.4156 3.7660 -4.3262 38 1 4.9799 4.9882 -2.2340 39 1 5.2779 -0.2971 -0.0005 40 1 1.6593 -2.0081 -0.0010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004113705.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:21 Heat of formation + Delta-G solvation = -66.764687 kcal Electronic energy + Delta-G solvation = -29458.381618 eV Core-core repulsion = 25264.819444 eV Total energy + Delta-G solvation = -4193.562174 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 350.087 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.65647 -39.78980 -39.26897 -37.24452 -36.34455 -35.77796 -35.47338 -32.85936 -32.44936 -31.06576 -30.73955 -29.12089 -28.33074 -25.51528 -23.84607 -22.74290 -22.56883 -21.62038 -21.33308 -19.04522 -18.43325 -17.54376 -17.10010 -16.74830 -16.50355 -16.18381 -16.00980 -15.56792 -15.37654 -15.20700 -15.00838 -14.20821 -13.88925 -13.73993 -13.66891 -13.62817 -13.36628 -12.99337 -12.76317 -12.36223 -12.13410 -11.96173 -11.66903 -11.49742 -11.43726 -11.35494 -11.21888 -10.98069 -10.75101 -10.65141 -10.21162 -9.86370 -9.73969 -9.70360 -9.40118 -8.90508 -8.71221 -8.65798 -8.22674 -6.23965 -4.25653 1.04580 1.22960 1.34069 2.21426 2.34178 2.47050 2.82636 3.20875 3.28030 3.33920 3.35892 3.60833 3.74931 4.24676 4.27554 4.43802 4.76383 4.88499 4.95000 5.06592 5.09369 5.19829 5.26083 5.35169 5.40659 5.47527 5.58991 5.76194 5.80648 5.88048 6.02765 6.18628 6.27962 6.39289 6.44860 6.51092 6.63968 6.76298 6.79572 7.18176 7.20892 7.46542 8.03960 8.16996 8.58691 8.84338 9.33241 10.87848 Molecular weight = 350.09amu Principal moments of inertia in cm(-1) A = 0.010907 B = 0.004710 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.438772 B = 5942.765050 C = 6929.536116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.192 3.808 3 C -0.238 4.238 4 C 0.528 3.472 5 O -0.502 6.502 6 O -0.327 6.327 7 C 0.176 3.824 8 C -0.527 4.527 9 H 0.086 0.914 10 C 0.081 3.919 11 N -0.888 5.888 12 Si 0.867 3.133 13 H -0.270 1.270 14 H -0.280 1.280 15 H -0.262 1.262 16 C 0.240 3.760 17 H 0.099 0.901 18 C -0.103 4.103 19 C -0.087 4.087 20 C -0.113 4.113 21 C -0.099 4.099 22 C -0.102 4.102 23 C -0.022 4.022 24 Cl -0.055 7.055 25 N -0.710 5.710 26 C 0.710 3.290 27 O -0.575 6.575 28 N -0.649 5.649 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.021 0.979 33 H 0.020 0.980 34 H 0.269 0.731 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.132 0.868 38 H 0.135 0.865 39 H 0.432 0.568 40 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.109 -10.478 4.936 16.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.090 3.910 3 C -0.247 4.247 4 C 0.370 3.630 5 O -0.391 6.391 6 O -0.241 6.241 7 C 0.103 3.897 8 C -0.564 4.564 9 H 0.104 0.896 10 C -0.122 4.122 11 N -0.525 5.525 12 Si 0.693 3.307 13 H -0.196 1.196 14 H -0.205 1.205 15 H -0.186 1.186 16 C 0.134 3.866 17 H 0.116 0.884 18 C -0.105 4.105 19 C -0.105 4.105 20 C -0.131 4.131 21 C -0.117 4.117 22 C -0.121 4.121 23 C -0.049 4.049 24 Cl -0.025 7.025 25 N -0.370 5.370 26 C 0.410 3.590 27 O -0.452 6.452 28 N -0.293 5.293 29 H 0.119 0.881 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.039 0.961 33 H 0.038 0.962 34 H 0.079 0.921 35 H 0.143 0.857 36 H 0.146 0.854 37 H 0.150 0.850 38 H 0.153 0.847 39 H 0.273 0.727 40 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 12.204 -10.536 5.254 16.958 hybrid contribution -0.169 0.808 0.724 1.098 sum 12.035 -9.729 5.978 16.590 Atomic orbital electron populations 1.21165 0.87521 1.04924 1.05232 1.19774 0.94570 0.84471 0.92183 1.18882 0.93129 0.91876 1.20823 1.18638 0.77108 0.84220 0.82986 1.90859 1.56509 1.58329 1.33444 1.86316 1.61021 1.43931 1.32880 1.20859 0.89141 0.80313 0.99359 1.20762 1.33478 1.07213 0.94971 0.89601 1.24651 0.94767 0.97044 0.95733 1.69845 1.34880 1.25663 1.22162 0.86973 0.78398 0.81957 0.83410 1.19580 1.20532 1.18611 1.18418 0.89188 0.82450 0.96509 0.88392 1.19948 1.01609 0.92271 0.96668 1.20792 0.98306 0.99900 0.91500 1.21188 0.99113 0.94571 0.98268 1.21146 0.98942 0.94364 0.97276 1.21051 0.99017 1.00505 0.91488 1.20803 1.02787 0.91813 0.89546 1.98417 1.93994 1.76564 1.33568 1.45246 1.09621 1.03633 1.78523 1.15630 0.81252 0.84780 0.77346 1.91039 1.72535 1.24542 1.57108 1.42025 1.05703 1.08874 1.72702 0.88056 0.89885 0.89101 0.96099 0.96198 0.92104 0.85698 0.85379 0.84991 0.84706 0.72651 0.73509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 9.69 36.01 0.35 -1.07 16 2 C 0.19 2.40 6.84 -81.62 -0.56 1.84 16 3 C -0.24 -3.66 5.12 -104.13 -0.53 -4.19 16 4 C 0.53 10.09 3.32 31.96 0.11 10.19 16 5 O -0.50 -10.54 15.89 -19.40 -0.31 -10.85 16 6 O -0.33 -7.22 10.09 -41.18 -0.42 -7.64 16 7 C 0.18 4.38 4.22 36.01 0.15 4.53 16 8 C -0.53 -14.77 9.99 -34.44 -0.34 -15.11 16 9 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 10 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 11 N -0.89 -26.17 13.96 55.43 0.77 -25.40 16 12 Si 0.87 20.96 27.37 -169.99 -4.65 16.31 16 13 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.26 -6.22 6.69 56.52 0.38 -5.84 16 16 C 0.24 3.22 3.06 -69.42 -0.21 3.00 16 17 H 0.10 1.34 6.74 -51.93 -0.35 0.99 16 18 C -0.10 -1.43 4.64 -104.59 -0.49 -1.91 16 19 C -0.09 -1.09 9.28 -39.59 -0.37 -1.45 16 20 C -0.11 -1.31 10.05 -39.58 -0.40 -1.71 16 21 C -0.10 -1.18 10.04 -39.59 -0.40 -1.58 16 22 C -0.10 -1.39 9.83 -39.55 -0.39 -1.78 16 23 C -0.02 -0.33 5.95 -39.49 -0.23 -0.57 16 24 Cl -0.05 -0.87 24.85 -51.86 -1.29 -2.16 16 25 N -0.71 -8.01 4.28 -60.32 -0.26 -8.27 16 26 C 0.71 8.84 8.63 -87.77 -0.76 8.08 16 27 O -0.58 -8.56 17.94 5.31 0.10 -8.46 16 28 N -0.65 -7.01 5.14 -12.88 -0.07 -7.08 16 29 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 1.19 6.88 -51.93 -0.36 0.84 16 32 H 0.02 0.53 7.50 -51.93 -0.39 0.14 16 33 H 0.02 0.51 7.29 -51.93 -0.38 0.13 16 34 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.13 1.45 7.47 -52.48 -0.39 1.06 16 36 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 37 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 38 H 0.14 1.67 8.06 -52.49 -0.42 1.24 16 39 H 0.43 4.00 8.93 -40.82 -0.36 3.64 16 40 H 0.43 3.48 8.65 -40.82 -0.35 3.13 16 LS Contribution 356.81 15.07 5.38 5.38 Total: -1.00 -33.82 356.81 -9.19 -43.01 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -4.28 Total: 4.70 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -4.17 Total: 0.46 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 0.45 Total: -40.74 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -0.63 Total: -26.95 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.65 Total: 16.31 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.29 Total: -2.16 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.82 -9.19 -43.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004113705.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.754 kcal (2) G-P(sol) polarization free energy of solvation -33.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds