Wall clock time and date at job start Tue Mar 31 2020 06:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42902 * 109.46996 * 2 1 4 4 C 1.36002 * 116.99648 * 179.97438 * 3 2 1 5 5 C 1.38506 * 120.08452 * 0.02562 * 4 3 2 6 6 C 1.38281 * 120.01713 * 180.02562 * 5 4 3 7 7 C 1.38276 * 120.18977 * 0.02562 * 6 5 4 8 8 C 1.38206 * 120.16177 * 359.97438 * 7 6 5 9 9 C 1.38764 * 119.97619 * 0.02562 * 8 7 6 10 10 N 1.39972 * 120.08957 * 179.97438 * 9 8 7 11 11 C 1.39012 * 119.99976 * 6.79333 * 10 9 8 12 12 N 1.29598 * 125.40211 * 4.57552 * 11 10 9 13 13 N 1.37764 * 115.62053 * 179.86177 * 12 11 10 14 14 C 1.29666 * 115.60142 * 0.43713 * 13 12 11 15 15 S 1.76200 * 125.41205 * 179.79687 * 14 13 12 16 16 C 1.81395 * 103.00031 * 359.97368 * 15 14 13 17 17 C 1.53006 * 109.47056 * 180.02562 * 16 15 14 18 18 C 1.50700 * 109.46964 * 179.97438 * 17 16 15 19 19 H 1.08004 * 120.00423 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00240 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00482 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 119.99557 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47045 * 90.00324 * 22 20 18 24 24 H 1.48501 * 109.47151 * 209.99990 * 22 20 18 25 25 H 1.48498 * 109.47228 * 329.99930 * 22 20 18 26 26 S 1.76036 * 125.40311 * 184.88458 * 11 10 9 27 27 H 1.08994 * 109.47632 * 299.99739 * 1 2 3 28 28 H 1.09002 * 109.47066 * 60.00373 * 1 2 3 29 29 H 1.09009 * 109.46874 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47404 * 239.99965 * 2 1 3 31 31 H 1.09000 * 109.47101 * 120.00408 * 2 1 3 32 32 H 1.08000 * 119.99005 * 359.97438 * 5 4 3 33 33 H 1.08003 * 119.90932 * 179.72362 * 6 5 4 34 34 H 1.07993 * 119.91914 * 179.97438 * 7 6 5 35 35 H 1.07997 * 120.01258 * 179.97438 * 8 7 6 36 36 H 0.96993 * 119.99808 * 186.78752 * 10 9 8 37 37 H 1.09000 * 109.47027 * 299.99961 * 16 15 14 38 38 H 1.08996 * 109.47285 * 60.00308 * 16 15 14 39 39 H 1.09000 * 109.46862 * 299.99684 * 17 16 15 40 40 H 1.08996 * 109.47131 * 59.99836 * 17 16 15 41 41 H 0.96998 * 120.00287 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5254 0.0005 5 6 4.1999 0.4282 0.0005 6 6 5.5706 0.6110 0.0016 7 6 6.1018 1.8876 0.0033 8 6 5.2654 2.9878 0.0033 9 6 3.8889 2.8123 0.0022 10 7 3.0396 3.9249 0.0028 11 6 3.5682 5.2029 -0.1380 12 7 4.8148 5.4796 -0.3598 13 7 5.1176 6.8192 -0.4679 14 6 4.1181 7.6328 -0.3252 15 16 4.2124 9.3903 -0.4085 16 6 5.9731 9.6900 -0.7251 17 6 6.2242 11.1960 -0.8254 18 6 7.6872 11.4449 -1.0878 19 1 8.3697 10.6123 -1.1740 20 6 8.1544 12.7355 -1.2179 21 7 9.4310 12.9528 -1.4474 22 14 6.9737 14.1756 -1.0695 23 1 6.8987 14.6101 0.3485 24 1 7.4588 15.3017 -1.9073 25 1 5.6252 13.7597 -1.5319 26 16 2.6519 6.7025 -0.0357 27 1 -0.3634 0.5137 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.7883 -0.5703 0.0005 33 1 6.2281 -0.2458 0.0061 34 1 7.1730 2.0252 0.0045 35 1 5.6830 3.9838 0.0050 36 1 2.0823 3.8042 0.1013 37 1 6.5646 9.2770 0.0920 38 1 6.2609 9.2103 -1.6606 39 1 5.6327 11.6093 -1.6423 40 1 5.9365 11.6753 0.1102 41 1 9.7597 13.8609 -1.5385 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004843427.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:08 Heat of formation + Delta-G solvation = 58.684770 kcal Electronic energy + Delta-G solvation = -24176.185975 eV Core-core repulsion = 20503.267459 eV Total energy + Delta-G solvation = -3672.918516 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 351.082 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.84721 -39.51495 -37.95267 -36.14868 -33.81914 -32.44222 -31.37923 -31.05726 -30.39132 -29.10945 -25.68271 -25.25828 -24.40292 -23.02548 -22.07398 -21.24945 -20.74424 -19.56744 -18.45163 -17.58650 -17.26669 -17.03300 -16.59725 -15.93483 -15.64570 -15.45365 -15.12907 -14.48101 -14.31342 -14.21860 -13.89219 -13.83193 -13.59749 -13.11571 -13.07302 -12.91434 -12.79167 -12.29671 -12.03996 -11.89890 -11.80241 -11.54692 -11.25839 -11.18089 -10.87941 -10.61435 -10.48239 -10.21096 -10.09986 -9.82400 -9.71600 -9.49214 -9.30894 -8.81719 -8.63441 -8.01156 -7.45077 -6.12922 -4.14089 0.25083 0.52672 0.95977 1.14382 1.27824 1.44091 2.23782 2.54503 2.57645 2.80268 3.26680 3.34605 3.36756 3.55867 4.26943 4.37278 4.39164 4.41932 4.54740 4.71692 4.72831 4.90010 5.00516 5.07825 5.19704 5.21324 5.27561 5.30696 5.52383 5.69326 5.80219 5.89701 5.92749 6.03272 6.27689 6.42583 6.46388 6.63675 6.80927 6.96924 7.07140 7.08804 7.58802 7.90397 8.39785 8.89886 9.45986 10.99578 Molecular weight = 351.08amu Principal moments of inertia in cm(-1) A = 0.022143 B = 0.001940 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.214781 B =14431.001267 C =15633.745618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.058 3.942 3 O -0.324 6.324 4 C 0.088 3.912 5 C -0.183 4.183 6 C -0.110 4.110 7 C -0.121 4.121 8 C -0.128 4.128 9 C 0.142 3.858 10 N -0.611 5.611 11 C 0.295 3.705 12 N -0.339 5.339 13 N -0.264 5.264 14 C 0.038 3.962 15 S -0.017 6.017 16 C -0.070 4.070 17 C 0.002 3.998 18 C -0.520 4.520 19 H 0.078 0.922 20 C 0.073 3.927 21 N -0.896 5.896 22 Si 0.877 3.123 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.264 1.264 26 S 0.075 5.925 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.130 0.870 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.183 0.817 36 H 0.429 0.571 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.029 0.971 40 H 0.024 0.976 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.068 -27.128 4.318 33.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.017 4.017 3 O -0.239 6.239 4 C 0.040 3.960 5 C -0.202 4.202 6 C -0.130 4.130 7 C -0.140 4.140 8 C -0.151 4.151 9 C 0.043 3.957 10 N -0.242 5.242 11 C -0.087 4.087 12 N -0.174 5.174 13 N -0.092 5.092 14 C -0.361 4.361 15 S 0.213 5.787 16 C -0.220 4.220 17 C -0.038 4.038 18 C -0.560 4.560 19 H 0.096 0.904 20 C -0.130 4.130 21 N -0.534 5.534 22 Si 0.704 3.296 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.188 1.188 26 S 0.309 5.691 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.148 0.852 33 H 0.143 0.857 34 H 0.147 0.853 35 H 0.200 0.800 36 H 0.268 0.732 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.047 0.953 40 H 0.043 0.957 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.441 -26.157 4.321 32.875 hybrid contribution 0.082 -0.575 -0.035 0.582 sum -19.359 -26.731 4.287 33.283 Atomic orbital electron populations 1.21789 0.92672 1.02985 1.03576 1.22757 0.95773 0.81664 1.01464 1.85952 1.18644 1.29767 1.89554 1.18394 0.82662 0.92009 1.02889 1.20969 0.94173 0.97165 1.07887 1.20959 0.94159 0.97540 1.00299 1.21040 1.00191 0.91629 1.01127 1.22210 0.90209 1.03322 0.99317 1.17168 0.90368 0.82720 1.05418 1.41118 1.09476 0.98726 1.74930 1.25914 0.93269 0.90603 0.98899 1.74951 1.11046 1.06986 1.24417 1.75594 1.23294 0.93371 1.16920 1.30579 0.93759 1.06493 1.05284 1.85743 1.19101 0.86776 1.87076 1.23943 0.87961 1.04082 1.05996 1.19447 0.99001 0.87681 0.97700 1.20878 0.90709 0.94173 1.50265 0.90427 1.24952 0.95044 0.98761 0.94242 1.69887 1.13424 1.21362 1.48679 0.86814 0.81906 0.82311 0.78575 1.20015 1.21100 1.18819 1.85508 1.12071 0.94857 1.76698 0.91478 0.91466 0.90284 0.91972 0.91988 0.85230 0.85732 0.85277 0.80038 0.73173 0.88939 0.88924 0.95299 0.95736 0.92430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 10.28 37.16 0.38 -0.23 16 2 C 0.06 0.32 5.46 37.16 0.20 0.52 16 3 O -0.32 -2.81 9.40 -19.75 -0.19 -2.99 16 4 C 0.09 0.89 6.70 -39.07 -0.26 0.63 16 5 C -0.18 -1.57 9.04 -39.47 -0.36 -1.93 16 6 C -0.11 -0.97 10.04 -39.55 -0.40 -1.36 16 7 C -0.12 -1.27 10.04 -39.58 -0.40 -1.67 16 8 C -0.13 -1.62 9.11 -39.40 -0.36 -1.98 16 9 C 0.14 1.68 6.64 -83.54 -0.55 1.12 16 10 N -0.61 -6.88 5.57 -10.23 -0.06 -6.93 16 11 C 0.30 3.98 8.29 -87.36 -0.72 3.26 16 12 N -0.34 -5.51 8.30 30.86 0.26 -5.26 16 13 N -0.26 -4.71 11.62 31.12 0.36 -4.35 16 14 C 0.04 0.62 7.82 51.85 0.41 1.02 16 15 S -0.02 -0.28 22.16 -107.50 -2.38 -2.67 16 16 C -0.07 -1.40 5.48 37.16 0.20 -1.19 16 17 C 0.00 0.04 4.05 -27.88 -0.11 -0.07 16 18 C -0.52 -14.41 9.66 -34.44 -0.33 -14.74 16 19 H 0.08 2.32 7.99 -52.48 -0.42 1.90 16 20 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 21 N -0.90 -27.02 13.96 55.43 0.77 -26.25 16 22 Si 0.88 21.00 27.47 -169.99 -4.67 16.33 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 25 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 26 S 0.07 0.93 23.39 -107.50 -2.51 -1.59 16 27 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.18 8.14 -51.92 -0.42 -0.24 16 30 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 31 H 0.06 0.28 7.66 -51.93 -0.40 -0.11 16 32 H 0.13 0.78 6.30 -52.49 -0.33 0.45 16 33 H 0.12 0.79 8.06 -52.48 -0.42 0.36 16 34 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.18 2.68 4.61 -61.41 -0.28 2.40 16 36 H 0.43 3.81 8.21 -40.82 -0.34 3.48 16 37 H 0.09 1.86 8.14 -51.92 -0.42 1.44 16 38 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 39 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 40 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 41 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 373.04 15.07 5.62 5.62 Total: -1.00 -31.50 373.04 -10.25 -41.76 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -5.06 Total: 0.98 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: -2.40 Total: -14.66 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: 1.33 Total: -42.79 kcal Atomic # 8 Polarization: -2.81 SS G_CDS: -0.19 Total: -2.99 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal Atomic # 16 Polarization: 0.65 SS G_CDS: -4.90 Total: -4.25 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.50 -10.25 -41.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004843427.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.443 kcal (2) G-P(sol) polarization free energy of solvation -31.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds