Wall clock time and date at job start Tue Mar 31 2020 06:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42902 * 109.46996 * 2 1 4 4 C 1.36002 * 116.99648 * 179.97438 * 3 2 1 5 5 C 1.38506 * 120.08452 * 0.02562 * 4 3 2 6 6 C 1.38281 * 120.01713 * 180.02562 * 5 4 3 7 7 C 1.38276 * 120.18977 * 0.02562 * 6 5 4 8 8 C 1.38206 * 120.16177 * 359.97438 * 7 6 5 9 9 C 1.38764 * 119.97619 * 0.02562 * 8 7 6 10 10 N 1.39972 * 120.08957 * 179.97438 * 9 8 7 11 11 C 1.39012 * 119.99976 * 6.79333 * 10 9 8 12 12 N 1.29598 * 125.40211 * 4.57552 * 11 10 9 13 13 N 1.37764 * 115.62053 * 179.86177 * 12 11 10 14 14 C 1.29666 * 115.60142 * 0.43713 * 13 12 11 15 15 S 1.76200 * 125.41205 * 179.79687 * 14 13 12 16 16 C 1.81395 * 103.00031 * 359.97368 * 15 14 13 17 17 C 1.53006 * 109.47056 * 180.02562 * 16 15 14 18 18 C 1.50700 * 109.46964 * 179.97438 * 17 16 15 19 19 H 1.08004 * 120.00423 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00240 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00482 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 119.99557 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47045 * 90.00324 * 22 20 18 24 24 H 1.48501 * 109.47151 * 209.99990 * 22 20 18 25 25 H 1.48498 * 109.47228 * 329.99930 * 22 20 18 26 26 S 1.76036 * 125.40311 * 184.88458 * 11 10 9 27 27 H 1.08994 * 109.47632 * 299.99739 * 1 2 3 28 28 H 1.09002 * 109.47066 * 60.00373 * 1 2 3 29 29 H 1.09009 * 109.46874 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47404 * 239.99965 * 2 1 3 31 31 H 1.09000 * 109.47101 * 120.00408 * 2 1 3 32 32 H 1.08000 * 119.99005 * 359.97438 * 5 4 3 33 33 H 1.08003 * 119.90932 * 179.72362 * 6 5 4 34 34 H 1.07993 * 119.91914 * 179.97438 * 7 6 5 35 35 H 1.07997 * 120.01258 * 179.97438 * 8 7 6 36 36 H 0.96993 * 119.99808 * 186.78752 * 10 9 8 37 37 H 1.09000 * 109.47027 * 299.99961 * 16 15 14 38 38 H 1.08996 * 109.47285 * 60.00308 * 16 15 14 39 39 H 1.09000 * 109.46862 * 299.99684 * 17 16 15 40 40 H 1.08996 * 109.47131 * 59.99836 * 17 16 15 41 41 H 0.96998 * 120.00287 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5254 0.0005 5 6 4.1999 0.4282 0.0005 6 6 5.5706 0.6110 0.0016 7 6 6.1018 1.8876 0.0033 8 6 5.2654 2.9878 0.0033 9 6 3.8889 2.8123 0.0022 10 7 3.0396 3.9249 0.0028 11 6 3.5682 5.2029 -0.1380 12 7 4.8148 5.4796 -0.3598 13 7 5.1176 6.8192 -0.4679 14 6 4.1181 7.6328 -0.3252 15 16 4.2124 9.3903 -0.4085 16 6 5.9731 9.6900 -0.7251 17 6 6.2242 11.1960 -0.8254 18 6 7.6872 11.4449 -1.0878 19 1 8.3697 10.6123 -1.1740 20 6 8.1544 12.7355 -1.2179 21 7 9.4310 12.9528 -1.4474 22 14 6.9737 14.1756 -1.0695 23 1 6.8987 14.6101 0.3485 24 1 7.4588 15.3017 -1.9073 25 1 5.6252 13.7597 -1.5319 26 16 2.6519 6.7025 -0.0357 27 1 -0.3634 0.5137 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.7883 -0.5703 0.0005 33 1 6.2281 -0.2458 0.0061 34 1 7.1730 2.0252 0.0045 35 1 5.6830 3.9838 0.0050 36 1 2.0823 3.8042 0.1013 37 1 6.5646 9.2770 0.0920 38 1 6.2609 9.2103 -1.6606 39 1 5.6327 11.6093 -1.6423 40 1 5.9365 11.6753 0.1102 41 1 9.7597 13.8609 -1.5385 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004843427.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:07 Heat of formation + Delta-G solvation = 40.588469 kcal Electronic energy + Delta-G solvation = -24176.970690 eV Core-core repulsion = 20503.267459 eV Total energy + Delta-G solvation = -3673.703231 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 351.082 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.64456 -40.54011 -38.71552 -37.04610 -35.79836 -33.35904 -32.99232 -32.06426 -31.16717 -29.91496 -27.61993 -26.36657 -24.99280 -23.93822 -22.94303 -22.73945 -21.90927 -20.59900 -19.27124 -19.12915 -18.49041 -18.21495 -17.14855 -17.06810 -16.63917 -16.43677 -16.29301 -15.94750 -15.76276 -15.17225 -15.03941 -14.79210 -14.73469 -14.55814 -14.06380 -13.72229 -13.70509 -13.39423 -13.11280 -12.96420 -12.78064 -12.55307 -12.30697 -12.25779 -12.16445 -12.02375 -11.80225 -11.68065 -11.65080 -11.27178 -11.23853 -10.86113 -10.78859 -10.51523 -9.60627 -9.05844 -8.52636 -8.30626 -6.37914 -0.87053 -0.55591 -0.18422 0.20151 0.36412 0.40425 1.06765 1.11518 1.39507 1.41158 1.52676 1.67165 2.14705 2.36232 2.77289 3.04124 3.20891 3.77599 3.87017 3.96840 4.08357 4.11969 4.15922 4.18207 4.22188 4.38121 4.44599 4.50246 4.69586 4.80635 4.95998 4.98625 5.09948 5.15190 5.24613 5.25566 5.30059 5.45332 5.52921 5.64964 5.81347 5.97740 6.20792 6.38417 6.68443 6.79722 7.26122 8.85647 Molecular weight = 351.08amu Principal moments of inertia in cm(-1) A = 0.022143 B = 0.001940 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.214781 B =14431.001267 C =15633.745618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.048 3.952 3 O -0.334 6.334 4 C 0.092 3.908 5 C -0.180 4.180 6 C -0.101 4.101 7 C -0.135 4.135 8 C -0.152 4.152 9 C 0.115 3.885 10 N -0.598 5.598 11 C 0.291 3.709 12 N -0.367 5.367 13 N -0.296 5.296 14 C 0.007 3.993 15 S 0.023 5.977 16 C -0.072 4.072 17 C 0.007 3.993 18 C -0.533 4.533 19 H 0.034 0.966 20 C 0.010 3.990 21 N -0.946 5.946 22 Si 0.949 3.051 23 H -0.263 1.263 24 H -0.283 1.283 25 H -0.240 1.240 26 S 0.154 5.846 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.099 0.901 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.161 0.839 33 H 0.155 0.845 34 H 0.136 0.864 35 H 0.159 0.841 36 H 0.440 0.560 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.038 0.962 40 H 0.037 0.963 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.645 -28.976 4.911 37.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.249 6.249 4 C 0.044 3.956 5 C -0.199 4.199 6 C -0.121 4.121 7 C -0.154 4.154 8 C -0.175 4.175 9 C 0.018 3.982 10 N -0.231 5.231 11 C -0.090 4.090 12 N -0.203 5.203 13 N -0.125 5.125 14 C -0.392 4.392 15 S 0.253 5.747 16 C -0.222 4.222 17 C -0.033 4.033 18 C -0.573 4.573 19 H 0.052 0.948 20 C -0.188 4.188 21 N -0.586 5.586 22 Si 0.771 3.229 23 H -0.188 1.188 24 H -0.208 1.208 25 H -0.164 1.164 26 S 0.388 5.612 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.118 0.882 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.179 0.821 33 H 0.172 0.828 34 H 0.154 0.846 35 H 0.175 0.825 36 H 0.281 0.719 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -23.061 -28.056 4.923 36.650 hybrid contribution 1.134 -0.347 -0.196 1.202 sum -21.927 -28.403 4.726 36.192 Atomic orbital electron populations 1.21816 0.91633 1.04200 1.03140 1.23075 0.96638 0.80313 1.02569 1.85955 1.17722 1.31936 1.89245 1.18473 0.83645 0.91568 1.01935 1.21367 0.93963 0.98154 1.06439 1.21313 0.94869 0.97559 0.98332 1.21219 1.00506 0.92071 1.01614 1.22112 0.91223 1.02974 1.01155 1.17321 0.90245 0.83568 1.07115 1.41157 1.09987 0.97946 1.73966 1.26194 0.93171 0.91999 0.97654 1.75059 1.12583 1.06007 1.26680 1.75583 1.25002 0.94540 1.17372 1.30678 0.95923 1.06456 1.06155 1.85295 1.14471 0.87416 1.87533 1.23541 0.91586 1.02077 1.05041 1.19284 0.95819 0.89903 0.98291 1.21194 0.93000 0.93198 1.49907 0.94785 1.25975 0.96913 1.02184 0.93721 1.70051 1.15887 1.22291 1.50388 0.85676 0.80159 0.77882 0.79147 1.18799 1.20838 1.16364 1.85129 1.08235 0.92374 1.75465 0.91807 0.92011 0.88246 0.90926 0.90708 0.82143 0.82762 0.84634 0.82455 0.71891 0.90164 0.90217 0.94390 0.94510 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 10.28 71.98 0.74 -0.07 16 2 C 0.05 0.39 5.46 71.98 0.39 0.78 16 3 O -0.33 -5.03 9.40 -93.57 -0.88 -5.91 16 4 C 0.09 1.69 6.70 22.60 0.15 1.84 16 5 C -0.18 -2.60 9.04 22.34 0.20 -2.39 16 6 C -0.10 -1.55 10.04 22.29 0.22 -1.33 16 7 C -0.14 -2.80 10.04 22.27 0.22 -2.58 16 8 C -0.15 -3.96 9.11 22.39 0.20 -3.76 16 9 C 0.12 2.68 6.64 38.23 0.25 2.94 16 10 N -0.60 -13.07 5.57 -186.29 -1.04 -14.10 16 11 C 0.29 7.80 8.29 179.21 1.49 9.28 16 12 N -0.37 -12.32 8.30 -56.28 -0.47 -12.79 16 13 N -0.30 -10.93 11.62 -55.46 -0.64 -11.58 16 14 C 0.01 0.24 7.82 130.56 1.02 1.26 16 15 S 0.02 0.76 22.16 -56.49 -1.25 -0.50 16 16 C -0.07 -2.95 5.48 71.98 0.39 -2.56 16 17 C 0.01 0.30 4.05 29.85 0.12 0.43 16 18 C -0.53 -30.67 9.66 25.60 0.25 -30.43 16 19 H 0.03 2.18 7.99 -2.91 -0.02 2.15 16 20 C 0.01 0.58 5.47 84.65 0.46 1.04 16 21 N -0.95 -59.15 13.96 21.45 0.30 -58.85 16 22 Si 0.95 43.06 27.47 68.60 1.88 44.94 16 23 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 25 H -0.24 -9.95 6.54 99.48 0.65 -9.30 16 26 S 0.15 3.58 23.39 -56.49 -1.32 2.26 16 27 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.10 0.14 8.14 -2.38 -0.02 0.12 16 30 H 0.07 0.45 7.66 -2.38 -0.02 0.43 16 31 H 0.07 0.42 7.66 -2.39 -0.02 0.41 16 32 H 0.16 1.26 6.30 -2.91 -0.02 1.24 16 33 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 34 H 0.14 2.48 8.06 -2.91 -0.02 2.45 16 35 H 0.16 4.97 4.61 -14.55 -0.07 4.90 16 36 H 0.44 7.21 8.21 -92.71 -0.76 6.45 16 37 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 38 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 39 H 0.04 1.68 7.20 -2.39 -0.02 1.66 16 40 H 0.04 1.60 7.57 -2.39 -0.02 1.59 16 41 H 0.27 15.60 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -71.80 373.04 2.91 -68.88 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 0.21 Total: 13.20 kcal Atomic # 6 Polarization: -31.67 SS G_CDS: 6.12 Total: -25.55 kcal Atomic # 7 Polarization: -95.48 SS G_CDS: -1.85 Total: -97.32 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: -0.88 Total: -5.91 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.88 Total: 44.94 kcal Atomic # 16 Polarization: 4.34 SS G_CDS: -2.57 Total: 1.76 kcal Total: -71.80 2.91 -68.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004843427.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.472 kcal (2) G-P(sol) polarization free energy of solvation -71.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds