Wall clock time and date at job start Tue Mar 31 2020 06:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38283 * 119.93712 * 2 1 4 4 C 1.38121 * 120.06366 * 180.02562 * 3 2 1 5 5 C 1.38826 * 119.93506 * 359.97438 * 4 3 2 6 6 N 1.40212 * 120.06199 * 180.02562 * 5 4 3 7 7 C 1.36698 * 127.15873 * 246.96572 * 6 5 4 8 8 C 1.50701 * 126.32621 * 0.05304 * 7 6 5 9 9 C 1.50700 * 109.46819 * 95.34844 * 8 7 6 10 10 C 1.38239 * 120.00090 * 264.65760 * 9 8 7 11 11 C 1.38233 * 119.99667 * 179.76561 * 10 9 8 12 12 C 1.38234 * 120.00391 * 0.51010 * 11 10 9 13 13 C 1.38233 * 119.99899 * 359.73919 * 12 11 10 14 14 C 1.38238 * 119.99791 * 84.92791 * 9 8 7 15 15 N 1.30497 * 107.34584 * 180.26622 * 7 6 5 16 16 N 1.28523 * 110.13241 * 359.76619 * 15 7 6 17 17 C 1.31426 * 109.85223 * 0.02562 * 16 15 7 18 18 S 1.76202 * 126.50606 * 179.97438 * 17 16 15 19 19 C 1.76200 * 100.00129 * 0.02562 * 18 17 16 20 20 H 1.07997 * 120.00030 * 359.97438 * 19 18 17 21 21 C 1.38668 * 119.99773 * 180.02562 * 19 18 17 22 22 N 1.31631 * 120.00264 * 359.72395 * 21 19 18 23 23 Si 1.86804 * 120.00035 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47118 * 59.99773 * 23 21 19 25 25 H 1.48499 * 109.47576 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46849 * 300.00191 * 23 21 19 27 27 C 1.38821 * 119.87088 * 0.27939 * 5 4 3 28 28 C 1.38125 * 119.93280 * 359.46517 * 27 5 4 29 29 H 1.08995 * 109.47225 * 89.99286 * 1 2 3 30 30 H 1.09001 * 109.47227 * 210.00153 * 1 2 3 31 31 H 1.09004 * 109.46966 * 329.99886 * 1 2 3 32 32 H 1.07999 * 119.96471 * 359.97438 * 3 2 1 33 33 H 1.08002 * 120.02535 * 180.02562 * 4 3 2 34 34 H 1.08996 * 109.47579 * 215.34470 * 8 7 6 35 35 H 1.08996 * 109.47157 * 335.35379 * 8 7 6 36 36 H 1.07993 * 119.99807 * 359.97438 * 10 9 8 37 37 H 1.08005 * 119.99552 * 180.22853 * 11 10 9 38 38 H 1.08004 * 119.99865 * 179.72764 * 12 11 10 39 39 H 1.08001 * 120.00046 * 179.97438 * 13 12 11 40 40 H 1.07990 * 120.00440 * 0.02562 * 14 9 8 41 41 H 0.97001 * 119.99931 * 180.02562 * 22 21 19 42 42 H 1.08001 * 120.03786 * 179.72615 * 27 5 4 43 43 H 1.07999 * 119.97012 * 180.27445 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1983 0.0000 4 6 3.5783 1.2014 -0.0005 5 6 4.2737 -0.0001 -0.0005 6 7 5.6758 -0.0002 -0.0005 7 6 6.5015 -0.4264 -1.0031 8 6 6.0731 -0.9907 -2.3332 9 6 6.0584 0.1086 -3.3639 10 6 4.8807 0.7747 -3.6473 11 6 4.8682 1.7863 -4.5892 12 6 6.0312 2.1248 -5.2554 13 6 7.2078 1.4552 -4.9758 14 6 7.2214 0.4471 -4.0300 15 7 7.7292 -0.2587 -0.5938 16 7 7.7364 0.2454 0.5884 17 6 6.5028 0.4284 1.0031 18 16 6.0073 1.0932 2.5579 19 6 7.5864 1.3932 3.2797 20 1 8.4852 1.1545 2.7306 21 6 7.6750 1.9347 4.5531 22 7 6.5795 2.2297 5.2206 23 14 9.3491 2.2522 5.3188 24 1 10.1089 3.2049 4.4701 25 1 9.1717 2.8309 6.6748 26 1 10.0976 0.9736 5.4197 27 6 3.5782 -1.2016 -0.0059 28 6 2.1970 -1.1983 0.0000 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6555 2.1327 -0.0004 33 1 4.1167 2.1376 -0.0001 34 1 6.7730 -1.7677 -2.6407 35 1 5.0741 -1.4169 -2.2423 36 1 3.9711 0.5069 -3.1303 37 1 3.9489 2.3092 -4.8079 38 1 6.0204 2.9122 -5.9946 39 1 8.1163 1.7194 -5.4966 40 1 8.1405 -0.0765 -3.8122 41 1 6.6415 2.6089 6.1113 42 1 4.1165 -2.1378 -0.0103 43 1 1.6553 -2.1327 0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004959635.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:40 Heat of formation + Delta-G solvation = 116.399835 kcal Electronic energy + Delta-G solvation = -27447.243598 eV Core-core repulsion = 23777.216938 eV Total energy + Delta-G solvation = -3670.026660 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 351.110 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.26415 -39.33399 -39.17767 -34.90170 -33.59352 -32.64822 -31.33813 -31.10406 -30.88957 -29.82021 -26.98095 -26.42186 -25.54651 -23.02034 -22.71603 -22.52448 -21.68174 -21.27908 -20.11036 -18.44137 -17.24003 -16.78562 -16.05681 -15.61105 -15.51506 -15.23190 -14.98685 -14.91897 -14.50268 -14.35714 -14.07440 -13.82860 -13.56097 -13.42032 -13.16315 -13.03125 -12.52230 -12.44405 -12.25577 -12.12478 -11.82378 -11.34961 -11.26506 -11.23291 -11.10047 -11.07269 -11.00067 -10.62724 -10.21668 -10.04321 -9.82849 -9.56237 -9.05264 -8.91413 -8.88230 -8.81473 -8.70185 -8.52198 -6.75571 -6.45136 -4.19173 1.03918 1.29103 1.30254 1.41168 2.34001 2.46966 3.23572 3.23731 3.26824 3.33502 3.54878 3.57674 3.79065 4.03663 4.71563 4.74082 4.75466 4.78256 4.81409 4.90748 4.98485 4.98620 5.08042 5.11324 5.15647 5.18719 5.27949 5.42072 5.47321 5.54581 5.58853 5.61876 5.66461 5.82786 5.91435 5.97363 6.02216 6.11852 6.20754 6.24064 6.43935 6.45510 6.48815 6.49935 6.64552 6.70552 6.77461 6.99337 7.55140 7.58830 8.38427 9.06576 9.45383 10.62963 Molecular weight = 351.11amu Principal moments of inertia in cm(-1) A = 0.008538 B = 0.004029 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3278.849933 B = 6948.000990 C = 9202.326400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.081 4.081 3 C -0.106 4.106 4 C -0.091 4.091 5 C 0.127 3.873 6 N -0.436 5.436 7 C 0.153 3.847 8 C 0.016 3.984 9 C -0.077 4.077 10 C -0.109 4.109 11 C -0.122 4.122 12 C -0.123 4.123 13 C -0.121 4.121 14 C -0.099 4.099 15 N -0.281 5.281 16 N -0.307 5.307 17 C 0.177 3.823 18 S 0.143 5.857 19 C -0.535 4.535 20 H 0.104 0.896 21 C 0.077 3.923 22 N -0.878 5.878 23 Si 0.932 3.068 24 H -0.269 1.269 25 H -0.282 1.282 26 H -0.269 1.269 27 C -0.104 4.104 28 C -0.110 4.110 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.127 0.873 41 H 0.274 0.726 42 H 0.127 0.873 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.392 -4.135 -16.902 21.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.081 4.081 3 C -0.125 4.125 4 C -0.110 4.110 5 C 0.036 3.964 6 N -0.131 5.131 7 C -0.116 4.116 8 C -0.024 4.024 9 C -0.078 4.078 10 C -0.127 4.127 11 C -0.140 4.140 12 C -0.141 4.141 13 C -0.139 4.139 14 C -0.117 4.117 15 N -0.120 5.120 16 N -0.151 5.151 17 C -0.192 4.192 18 S 0.375 5.625 19 C -0.684 4.684 20 H 0.122 0.878 21 C -0.132 4.132 22 N -0.513 5.513 23 Si 0.757 3.243 24 H -0.194 1.194 25 H -0.208 1.208 26 H -0.194 1.194 27 C -0.124 4.124 28 C -0.129 4.129 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.148 0.852 33 H 0.149 0.851 34 H 0.120 0.880 35 H 0.104 0.896 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.145 0.855 41 H 0.084 0.916 42 H 0.145 0.855 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.949 -3.852 -16.199 20.494 hybrid contribution 0.890 0.107 0.153 0.909 sum -11.059 -3.745 -16.045 19.844 Atomic orbital electron populations 1.20801 0.90871 1.03095 1.02303 1.20007 0.96311 0.93020 0.98747 1.20917 0.93035 0.98007 1.00520 1.21229 0.94485 0.97374 0.97935 1.17503 0.80230 0.94281 1.04435 1.43677 1.04557 1.51057 1.13824 1.24413 0.87196 1.06857 0.93138 1.18807 1.02710 0.95424 0.85445 1.19675 0.93842 0.97789 0.96539 1.21028 0.97576 0.96270 0.97875 1.21075 0.98251 0.97670 0.97028 1.21131 0.93063 0.99846 1.00093 1.21141 0.98038 0.96420 0.98335 1.21117 0.97780 0.97383 0.95427 1.73863 1.16767 1.14942 1.06453 1.74761 1.15995 1.19694 1.04610 1.28578 0.88788 1.02648 0.99218 1.83583 1.12664 1.69788 0.96448 1.23180 0.92741 1.48739 1.03693 0.87818 1.25053 0.98813 0.93839 0.95543 1.69942 1.27794 1.40557 1.13030 0.85988 0.81438 0.79191 0.77674 1.19438 1.20780 1.19425 1.21140 0.94504 0.96834 0.99916 1.20863 0.92970 0.97925 1.01122 0.91097 0.91384 0.91277 0.85163 0.85116 0.87964 0.89641 0.86392 0.86248 0.86334 0.86106 0.85542 0.91608 0.85478 0.85299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.01 36.01 0.36 -0.48 16 2 C -0.08 -0.84 5.88 -104.59 -0.62 -1.46 16 3 C -0.11 -1.25 9.69 -39.61 -0.38 -1.64 16 4 C -0.09 -1.35 9.95 -39.41 -0.39 -1.75 16 5 C 0.13 2.05 5.20 -83.59 -0.43 1.62 16 6 N -0.44 -8.57 2.83 -57.59 -0.16 -8.73 16 7 C 0.15 2.88 7.25 -153.89 -1.12 1.76 16 8 C 0.02 0.22 5.75 -29.03 -0.17 0.05 16 9 C -0.08 -1.04 5.12 -104.62 -0.54 -1.58 16 10 C -0.11 -1.36 9.68 -39.58 -0.38 -1.74 16 11 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 12 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 13 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 14 C -0.10 -1.31 9.72 -39.58 -0.38 -1.69 16 15 N -0.28 -6.36 12.18 33.01 0.40 -5.96 16 16 N -0.31 -7.88 11.04 30.78 0.34 -7.54 16 17 C 0.18 4.26 8.01 -87.86 -0.70 3.55 16 18 S 0.14 3.67 21.59 -107.50 -2.32 1.35 16 19 C -0.53 -15.30 9.37 30.89 0.29 -15.01 16 20 H 0.10 3.06 6.93 -52.49 -0.36 2.70 16 21 C 0.08 2.12 5.49 -17.48 -0.10 2.03 16 22 N -0.88 -24.82 13.22 55.48 0.73 -24.09 16 23 Si 0.93 21.64 29.55 -169.99 -5.02 16.61 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 27 C -0.10 -1.40 9.15 -39.41 -0.36 -1.76 16 28 C -0.11 -1.19 9.69 -39.61 -0.38 -1.58 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 31 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 32 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.13 2.11 8.06 -52.49 -0.42 1.68 16 34 H 0.10 1.24 8.12 -51.93 -0.42 0.82 16 35 H 0.09 1.00 7.02 -51.93 -0.36 0.64 16 36 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 37 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 38 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 39 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 40 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 41 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.13 1.62 8.06 -52.49 -0.42 1.19 16 43 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 389.05 15.07 5.86 5.86 Total: -1.00 -33.42 389.05 -12.02 -45.44 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -5.35 Total: 2.07 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: -6.50 Total: -25.01 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: 1.31 Total: -46.32 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 3.67 SS G_CDS: -2.32 Total: 1.35 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.42 -12.02 -45.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004959635.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.838 kcal (2) G-P(sol) polarization free energy of solvation -33.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds