Wall clock time and date at job start Tue Mar 31 2020 05:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.39013 * 124.29746 * 2 1 4 4 C 1.39030 * 131.63975 * 359.97289 * 3 2 1 5 5 C 1.38053 * 120.14709 * 179.19081 * 4 3 2 6 6 C 1.38653 * 120.64859 * 0.69688 * 5 4 3 7 7 Br 1.89098 * 119.96152 * 179.54385 * 6 5 4 8 8 C 1.38038 * 120.07482 * 359.55926 * 6 5 4 9 9 C 1.39255 * 119.70480 * 0.02562 * 8 6 5 10 10 C 1.47874 * 133.22138 * 180.02562 * 9 8 6 11 11 N 1.31439 * 127.50891 * 359.97438 * 10 9 8 12 12 N 1.28997 * 119.99876 * 353.40729 * 11 10 9 13 13 C 1.34778 * 120.00273 * 173.94592 * 12 11 10 14 14 O 1.21805 * 119.99627 * 0.27262 * 13 12 11 15 15 C 1.41392 * 120.00227 * 180.27762 * 13 12 11 16 16 H 1.08000 * 119.99688 * 359.97438 * 15 13 12 17 17 C 1.40258 * 119.99674 * 179.97438 * 15 13 12 18 18 N 1.30570 * 120.00289 * 359.97438 * 17 15 13 19 19 Si 1.86805 * 119.99940 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47178 * 59.99435 * 19 17 15 21 21 H 1.48499 * 109.47242 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.46758 * 299.99919 * 19 17 15 23 23 C 1.34395 * 124.29395 * 179.97438 * 2 1 3 24 24 O 1.21661 * 126.05427 * 0.04415 * 23 2 1 25 25 H 1.08994 * 109.47178 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47051 * 300.00370 * 1 2 3 27 27 H 1.08994 * 109.46978 * 60.00241 * 1 2 3 28 28 H 1.08005 * 119.92700 * 359.97438 * 4 3 2 29 29 H 1.08003 * 119.67091 * 180.25730 * 5 4 3 30 30 H 1.08001 * 120.14864 * 180.02562 * 8 6 5 31 31 H 0.97001 * 120.00133 * 354.21900 * 12 11 10 32 32 H 0.96998 * 120.00060 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2483 1.1484 0.0000 4 6 1.9105 2.4970 -0.0005 5 6 2.8999 3.4597 0.0165 6 6 4.2383 3.0976 0.0197 7 35 5.5777 4.4324 0.0300 8 6 4.5941 1.7638 0.0150 9 6 3.6033 0.7854 0.0066 10 6 3.6400 -0.6929 0.0004 11 7 4.7022 -1.4671 0.0013 12 7 5.8775 -0.9497 -0.1202 13 6 6.9719 -1.7267 0.0027 14 8 6.8510 -2.9184 0.2235 15 6 8.2604 -1.1584 -0.1246 16 1 8.3675 -0.1018 -0.3208 17 6 9.3992 -1.9670 0.0038 18 7 9.2696 -3.2443 0.2414 19 14 11.1015 -1.2164 -0.1651 20 1 11.2859 -0.1694 0.8717 21 1 12.1286 -2.2744 0.0106 22 1 11.2429 -0.6088 -1.5127 23 6 2.2222 -1.1103 0.0005 24 8 1.8130 -2.2561 0.0003 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.8715 2.7923 -0.0014 29 1 2.6287 4.5051 0.0202 30 1 5.6363 1.4805 0.0179 31 1 5.9739 -0.0006 -0.2960 32 1 10.0572 -3.8035 0.3298 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005603473.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:28 Heat of formation + Delta-G solvation = -0.316768 kcal Electronic energy + Delta-G solvation = -21856.145161 eV Core-core repulsion = 18249.777694 eV Total energy + Delta-G solvation = -3606.367467 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 351.001 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.81930 -40.98304 -39.59395 -37.97637 -37.14131 -34.95702 -33.82314 -32.70602 -31.75503 -30.39654 -29.03769 -28.31442 -25.77618 -23.57907 -23.42709 -22.05187 -21.75930 -19.80041 -18.79926 -18.13337 -17.85831 -17.38258 -17.31923 -16.68090 -16.11909 -16.01936 -15.62344 -15.22716 -15.03070 -14.74638 -14.47397 -14.27158 -13.52676 -13.50106 -13.43414 -13.25872 -12.98791 -12.74205 -12.71802 -12.31352 -12.10327 -11.94022 -11.34243 -11.09775 -11.03400 -10.96301 -10.68580 -10.33530 -9.46773 -8.90963 -8.60324 -7.31384 -0.70556 -0.02338 0.56700 0.59533 1.30418 1.39614 1.41159 1.56819 1.88836 1.99260 2.24762 2.29745 2.51720 3.00115 3.35669 3.46151 3.52417 3.84521 3.93486 4.16610 4.32983 4.39705 4.54702 4.65078 4.77958 4.84434 4.85806 5.03407 5.06860 5.37788 5.43271 5.47393 5.73712 5.80166 6.47682 6.53671 6.70724 7.07115 8.12087 8.33147 Molecular weight = 351.00amu Principal moments of inertia in cm(-1) A = 0.008552 B = 0.004749 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3273.455011 B = 5894.254648 C = 9142.102855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.535 5.535 3 C 0.167 3.833 4 C -0.103 4.103 5 C -0.040 4.040 6 C -0.111 4.111 7 Br -0.037 7.037 8 C -0.060 4.060 9 C -0.142 4.142 10 C -0.074 4.074 11 N -0.128 5.128 12 N -0.497 5.497 13 C 0.514 3.486 14 O -0.591 6.591 15 C -0.538 4.538 16 H 0.108 0.892 17 C 0.030 3.970 18 N -0.788 5.788 19 Si 1.013 2.987 20 H -0.246 1.246 21 H -0.269 1.269 22 H -0.247 1.247 23 C 0.585 3.415 24 O -0.535 6.535 25 H 0.081 0.919 26 H 0.104 0.896 27 H 0.105 0.895 28 H 0.186 0.814 29 H 0.181 0.819 30 H 0.119 0.881 31 H 0.386 0.614 32 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.264 23.749 -1.228 26.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.255 5.255 3 C 0.067 3.933 4 C -0.124 4.124 5 C -0.062 4.062 6 C -0.192 4.192 7 Br 0.049 6.951 8 C -0.083 4.083 9 C -0.149 4.149 10 C -0.254 4.254 11 N 0.043 4.957 12 N -0.248 5.248 13 C 0.328 3.672 14 O -0.474 6.474 15 C -0.573 4.573 16 H 0.126 0.874 17 C -0.190 4.190 18 N -0.415 5.415 19 Si 0.829 3.171 20 H -0.170 1.170 21 H -0.193 1.193 22 H -0.170 1.170 23 C 0.374 3.626 24 O -0.409 6.409 25 H 0.100 0.900 26 H 0.123 0.877 27 H 0.124 0.876 28 H 0.203 0.797 29 H 0.198 0.802 30 H 0.137 0.863 31 H 0.230 0.770 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.746 21.533 -0.986 24.548 hybrid contribution 0.497 0.143 -0.103 0.527 sum -11.249 21.676 -1.089 24.445 Atomic orbital electron populations 1.22272 0.73260 1.05359 1.05718 1.45144 1.08679 1.03668 1.68029 1.18535 0.87882 0.89172 0.97737 1.20700 1.02538 0.86227 1.02936 1.21361 0.88574 1.01763 0.94457 1.21603 0.95022 0.91669 1.10892 1.96746 1.51301 1.49298 1.97791 1.20495 0.97765 0.91261 0.98768 1.19356 0.95250 0.91049 1.09199 1.22829 0.93346 0.90875 1.18335 1.71448 0.92609 1.32060 0.99606 1.45703 1.01982 1.12942 1.64208 1.17901 0.83156 0.86089 0.80065 1.90690 1.85504 1.16978 1.54276 1.20545 0.88611 0.98505 1.49623 0.87415 1.27242 1.06452 0.94463 0.90880 1.70106 1.34125 1.07501 1.29785 0.84840 0.72558 0.78740 0.80958 1.16982 1.19341 1.17046 1.17552 0.85037 0.84208 0.75832 1.90811 1.79192 1.20290 1.50602 0.90032 0.87723 0.87647 0.79687 0.80185 0.86326 0.77036 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.08 10.93 127.77 1.40 2.48 16 2 N -0.53 -13.95 3.13 -657.66 -2.06 -16.01 16 3 C 0.17 3.95 6.74 38.69 0.26 4.21 16 4 C -0.10 -1.41 9.88 22.42 0.22 -1.19 16 5 C -0.04 -0.56 9.76 22.32 0.22 -0.35 16 6 C -0.11 -2.33 6.22 22.32 0.14 -2.19 16 7 Br -0.04 -0.71 33.70 -20.37 -0.69 -1.40 16 8 C -0.06 -1.69 9.11 22.47 0.20 -1.48 16 9 C -0.14 -4.51 6.12 -19.98 -0.12 -4.63 16 10 C -0.07 -3.09 7.51 44.29 0.33 -2.76 16 11 N -0.13 -6.59 10.67 -43.94 -0.47 -7.06 16 12 N -0.50 -24.90 5.84 -180.17 -1.05 -25.95 16 13 C 0.51 30.46 7.64 85.02 0.65 31.11 16 14 O -0.59 -41.11 15.18 -4.68 -0.07 -41.18 16 15 C -0.54 -28.77 9.30 23.54 0.22 -28.55 16 16 H 0.11 4.89 7.85 -2.91 -0.02 4.87 16 17 C 0.03 1.57 5.50 85.37 0.47 2.03 16 18 N -0.79 -45.73 11.72 21.87 0.26 -45.47 16 19 Si 1.01 36.91 29.56 68.60 2.03 38.94 16 20 H -0.25 -8.32 7.11 99.48 0.71 -7.62 16 21 H -0.27 -9.45 7.11 99.48 0.71 -8.75 16 22 H -0.25 -8.36 7.11 99.48 0.71 -7.66 16 23 C 0.59 22.59 8.07 86.83 0.70 23.29 16 24 O -0.53 -24.27 17.46 -4.22 -0.07 -24.35 16 25 H 0.08 1.47 7.58 -2.39 -0.02 1.45 16 26 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 27 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.19 0.83 8.06 -2.91 -0.02 0.81 16 29 H 0.18 1.19 8.06 -2.91 -0.02 1.17 16 30 H 0.12 3.62 5.69 -2.91 -0.02 3.60 16 31 H 0.39 16.23 4.77 -219.72 -1.05 15.18 16 32 H 0.29 14.90 8.29 -92.71 -0.77 14.14 16 Total: -1.00 -84.22 311.95 2.72 -81.50 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.16 Total: 19.00 kcal Atomic # 6 Polarization: 17.29 SS G_CDS: 4.69 Total: 21.98 kcal Atomic # 7 Polarization: -91.17 SS G_CDS: -3.32 Total: -94.49 kcal Atomic # 8 Polarization: -65.38 SS G_CDS: -0.14 Total: -65.52 kcal Atomic # 14 Polarization: 36.91 SS G_CDS: 2.03 Total: 38.94 kcal Atomic # 35 Polarization: -0.71 SS G_CDS: -0.69 Total: -1.40 kcal Total: -84.22 2.72 -81.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005603473.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.179 kcal (2) G-P(sol) polarization free energy of solvation -84.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds