Wall clock time and date at job start Tue Mar 31 2020 06:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.47169 * 2 1 4 4 C 1.50704 * 109.47053 * 119.99955 * 2 1 3 5 5 O 1.21277 * 119.99997 * 359.97438 * 4 2 1 6 6 N 1.34777 * 120.00131 * 180.02562 * 4 2 1 7 7 N 1.40099 * 120.00265 * 179.97438 * 6 4 2 8 8 C 1.46500 * 119.99916 * 285.00086 * 7 6 4 9 9 C 1.50698 * 109.46840 * 269.99614 * 8 7 6 10 10 H 1.07997 * 120.00241 * 0.02562 * 9 8 7 11 11 C 1.37882 * 119.99899 * 180.02562 * 9 8 7 12 12 N 1.31517 * 120.00022 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00113 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46879 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47270 * 119.99526 * 13 11 9 16 16 H 1.48502 * 109.46878 * 239.99966 * 13 11 9 17 17 C 1.37784 * 120.00098 * 104.99670 * 7 6 4 18 18 N 1.29414 * 120.47873 * 179.97438 * 17 7 6 19 19 S 1.67219 * 106.21385 * 180.02562 * 18 17 7 20 20 O 1.42101 * 107.58478 * 247.98630 * 19 18 17 21 21 O 1.42088 * 107.58761 * 112.01681 * 19 18 17 22 22 C 1.77142 * 99.56387 * 359.97438 * 19 18 17 23 23 C 1.36526 * 134.75426 * 179.97438 * 22 19 18 24 24 C 1.38738 * 119.65325 * 180.02562 * 23 22 19 25 25 C 1.38370 * 119.52157 * 359.75828 * 24 23 22 26 26 C 1.37666 * 120.94516 * 0.51327 * 25 24 23 27 27 C 1.40105 * 103.14008 * 0.02562 * 22 19 18 28 28 H 1.09008 * 109.47286 * 300.00036 * 1 2 3 29 29 H 1.09002 * 109.47453 * 59.99763 * 1 2 3 30 30 H 1.09004 * 109.47317 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47498 * 239.99777 * 2 1 3 32 32 H 1.09001 * 109.47144 * 60.00490 * 3 2 1 33 33 H 1.09005 * 109.47295 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47215 * 299.99746 * 3 2 1 35 35 H 0.97004 * 119.99697 * 359.97438 * 6 4 2 36 36 H 1.08993 * 109.47377 * 29.99848 * 8 7 6 37 37 H 1.09000 * 109.46771 * 149.99959 * 8 7 6 38 38 H 0.96993 * 119.99970 * 179.97438 * 12 11 9 39 39 H 1.08006 * 120.17137 * 0.02562 * 23 22 19 40 40 H 1.07999 * 120.24116 * 180.02562 * 24 23 22 41 41 H 1.07998 * 119.52715 * 180.25765 * 25 24 23 42 42 H 1.08002 * 119.85228 * 179.74928 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 1.2441 -1.1709 2.0290 6 7 3.3573 -0.8331 1.4441 7 7 3.8243 -1.4931 2.5883 8 6 3.7585 -0.8314 3.8937 9 6 5.0297 -0.0571 4.1290 10 1 5.8086 -0.0574 3.3809 11 6 5.1985 0.6518 5.2995 12 7 4.2498 0.6526 6.2104 13 14 6.7739 1.6122 5.5910 14 1 7.6755 1.4506 4.4221 15 1 6.4507 3.0502 5.7722 16 1 7.4482 1.0988 6.8104 17 6 4.3455 -2.7644 2.4858 18 7 4.7799 -3.3824 3.5366 19 16 5.3248 -4.8730 3.0098 20 8 4.4507 -5.8609 3.5383 21 8 6.7373 -4.8923 3.1625 22 6 4.9748 -4.7197 1.2800 23 6 5.1378 -5.5269 0.1911 24 6 4.7420 -5.0789 -1.0609 25 6 4.1819 -3.8202 -1.1889 26 6 4.0213 -3.0021 -0.0934 27 6 4.4161 -3.4387 1.1804 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 3.9877 -0.4645 0.8055 36 1 2.9087 -0.1492 3.9128 37 1 3.6399 -1.5815 4.6756 38 1 4.3686 1.1510 7.0339 39 1 5.5727 -6.5092 0.3038 40 1 4.8663 -5.7098 -1.9286 41 1 3.8699 -3.4730 -2.1628 42 1 3.5856 -2.0212 -0.2142 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005632733.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:17 Heat of formation + Delta-G solvation = -25.190345 kcal Electronic energy + Delta-G solvation = -29812.754581 eV Core-core repulsion = 25693.446096 eV Total energy + Delta-G solvation = -4119.308485 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 351.109 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.97420 -40.74683 -38.94449 -38.34273 -37.05428 -36.68939 -35.61444 -35.11648 -32.80514 -32.31140 -31.70229 -29.35015 -27.90308 -25.82164 -25.14284 -24.51303 -23.81986 -22.17900 -21.35792 -20.48301 -19.34821 -18.86114 -18.48633 -18.27940 -17.73880 -17.35747 -17.26768 -16.58041 -16.35930 -16.08769 -15.71601 -15.62676 -15.21800 -15.05824 -14.68954 -14.45510 -14.12123 -13.75487 -13.70996 -13.62828 -13.56573 -13.35660 -13.26555 -13.16147 -12.99459 -12.87288 -12.78575 -12.70108 -12.31385 -12.04988 -12.00532 -11.82603 -11.75693 -11.40701 -11.18590 -10.73308 -10.68949 -10.59276 -10.25498 -9.83651 -8.29547 -6.45075 -1.00372 -0.75876 -0.05624 0.54740 0.85982 1.35395 1.38160 1.40237 1.50753 1.92000 2.16542 2.32163 2.35048 2.39228 2.97058 3.03648 3.37743 3.61034 3.68385 3.90709 3.96033 4.04345 4.09917 4.15034 4.33981 4.44999 4.64230 4.67917 4.81362 4.81890 4.93674 4.95847 4.98445 5.04235 5.09612 5.09841 5.13651 5.39373 5.39678 5.48671 5.63734 5.67280 5.84046 6.09891 6.19073 6.63101 7.15814 7.24844 8.79209 Molecular weight = 351.11amu Principal moments of inertia in cm(-1) A = 0.007475 B = 0.005858 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3744.785734 B = 4778.815152 C = 7430.210372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.089 4.089 3 C -0.150 4.150 4 C 0.506 3.494 5 O -0.565 6.565 6 N -0.512 5.512 7 N -0.343 5.343 8 C 0.279 3.721 9 C -0.540 4.540 10 H 0.067 0.933 11 C 0.012 3.988 12 N -0.926 5.926 13 Si 0.972 3.028 14 H -0.261 1.261 15 H -0.268 1.268 16 H -0.285 1.285 17 C 0.496 3.504 18 N -0.920 5.920 19 S 2.576 3.424 20 O -0.991 6.991 21 O -0.985 6.985 22 C -0.630 4.630 23 C -0.007 4.007 24 C -0.080 4.080 25 C -0.068 4.068 26 C -0.058 4.058 27 C -0.131 4.131 28 H 0.036 0.964 29 H 0.103 0.897 30 H 0.053 0.947 31 H 0.155 0.845 32 H 0.037 0.963 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.435 0.565 36 H 0.021 0.979 37 H 0.028 0.972 38 H 0.269 0.731 39 H 0.164 0.836 40 H 0.196 0.804 41 H 0.200 0.800 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.985 -2.188 -28.280 28.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.111 4.111 3 C -0.207 4.207 4 C 0.296 3.704 5 O -0.439 6.439 6 N -0.264 5.264 7 N -0.139 5.139 8 C 0.160 3.840 9 C -0.579 4.579 10 H 0.085 0.915 11 C -0.188 4.188 12 N -0.565 5.565 13 Si 0.796 3.204 14 H -0.185 1.185 15 H -0.193 1.193 16 H -0.211 1.211 17 C 0.223 3.777 18 N -0.775 5.775 19 S 2.668 3.332 20 O -0.980 6.980 21 O -0.974 6.974 22 C -0.721 4.721 23 C -0.026 4.026 24 C -0.099 4.099 25 C -0.086 4.086 26 C -0.079 4.079 27 C -0.138 4.138 28 H 0.055 0.945 29 H 0.122 0.878 30 H 0.072 0.928 31 H 0.172 0.828 32 H 0.057 0.943 33 H 0.093 0.907 34 H 0.125 0.875 35 H 0.281 0.719 36 H 0.039 0.961 37 H 0.045 0.955 38 H 0.078 0.922 39 H 0.181 0.819 40 H 0.213 0.787 41 H 0.217 0.783 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.141 -2.929 -25.944 26.297 hybrid contribution 0.699 0.671 0.619 1.149 sum -2.442 -2.258 -25.326 25.543 Atomic orbital electron populations 1.21698 0.92052 1.02582 1.02948 1.21532 0.98366 0.97813 0.93404 1.21923 1.02296 0.92681 1.03799 1.22720 0.79807 0.78565 0.89351 1.90772 1.55768 1.48952 1.48427 1.45632 1.07584 1.56735 1.16476 1.46547 1.55247 1.09085 1.03066 1.19325 0.97043 0.91906 0.75735 1.21569 1.02230 1.29903 1.04178 0.91497 1.25855 1.00326 0.97512 0.95100 1.70078 1.35042 1.42589 1.08820 0.85304 0.78591 0.78159 0.78375 1.18457 1.19331 1.21104 1.20709 0.82795 0.85216 0.89008 1.77587 1.43155 1.26002 1.30715 1.06155 0.74667 0.77048 0.75363 1.93540 1.66054 1.60112 1.78250 1.93544 1.30630 1.87489 1.85778 1.30771 1.14254 1.02868 1.24204 1.20637 0.92958 0.98589 0.90393 1.22414 0.93494 0.96588 0.97406 1.22017 0.93939 0.92878 0.99741 1.21814 0.95528 1.01883 0.88710 1.19973 1.05536 0.94358 0.93930 0.94501 0.87831 0.92829 0.82783 0.94324 0.90736 0.87518 0.71910 0.96069 0.95456 0.92211 0.81886 0.78696 0.78289 0.82406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 8.48 71.98 0.61 -1.53 16 2 C -0.09 -1.27 3.26 -11.54 -0.04 -1.31 16 3 C -0.15 -1.84 9.09 71.98 0.65 -1.19 16 4 C 0.51 14.37 6.42 87.66 0.56 14.93 16 5 O -0.56 -22.99 16.16 -3.02 -0.05 -23.04 16 6 N -0.51 -15.08 3.52 -173.53 -0.61 -15.69 16 7 N -0.34 -14.73 2.83 -363.68 -1.03 -15.76 16 8 C 0.28 15.26 5.25 85.63 0.45 15.71 16 9 C -0.54 -30.18 9.39 25.60 0.24 -29.94 16 10 H 0.07 3.58 7.81 -2.91 -0.02 3.56 16 11 C 0.01 0.68 5.46 84.66 0.46 1.14 16 12 N -0.93 -56.26 13.29 21.45 0.28 -55.98 16 13 Si 0.97 44.41 29.54 68.60 2.03 46.44 16 14 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 15 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 16 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 17 C 0.50 21.18 7.46 136.45 1.02 22.20 16 18 N -0.92 -45.74 10.77 -66.32 -0.71 -46.46 16 19 S 2.58 111.58 6.47 -56.49 -0.37 111.21 16 20 O -0.99 -47.29 18.09 -128.18 -2.32 -49.61 16 21 O -0.99 -46.65 18.09 -128.18 -2.32 -48.97 16 22 C -0.63 -19.58 6.56 22.32 0.15 -19.44 16 23 C -0.01 -0.13 10.02 21.99 0.22 0.09 16 24 C -0.08 -0.80 10.10 22.42 0.23 -0.57 16 25 C -0.07 -0.62 9.97 22.17 0.22 -0.40 16 26 C -0.06 -1.06 9.37 22.64 0.21 -0.85 16 27 C -0.13 -4.09 6.01 -19.99 -0.12 -4.21 16 28 H 0.04 0.80 8.10 -2.38 -0.02 0.78 16 29 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.05 0.96 8.10 -2.38 -0.02 0.94 16 31 H 0.15 0.61 8.01 -2.39 -0.02 0.59 16 32 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.07 0.78 7.56 -2.38 -0.02 0.77 16 34 H 0.11 0.62 8.14 -2.39 -0.02 0.61 16 35 H 0.43 8.63 7.47 -213.32 -1.59 7.04 16 36 H 0.02 1.24 8.06 -2.39 -0.02 1.22 16 37 H 0.03 1.73 7.39 -2.39 -0.02 1.71 16 38 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 39 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 40 H 0.20 0.02 8.06 -2.91 -0.02 -0.01 16 41 H 0.20 -0.39 8.06 -2.91 -0.02 -0.41 16 42 H 0.16 2.02 4.62 -2.91 -0.01 2.00 16 Total: -1.00 -99.17 370.92 -0.75 -99.92 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -0.52 Total: 3.28 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: 4.87 Total: -5.35 kcal Atomic # 7 Polarization: -131.81 SS G_CDS: -2.07 Total: -133.88 kcal Atomic # 8 Polarization: -116.93 SS G_CDS: -4.69 Total: -121.62 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: 111.58 SS G_CDS: -0.37 Total: 111.21 kcal Total: -99.17 -0.75 -99.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005632733.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.729 kcal (2) G-P(sol) polarization free energy of solvation -99.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds