Wall clock time and date at job start Tue Mar 31 2020 06:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46492 * 120.00155 * 2 1 4 4 C 1.50696 * 109.47380 * 270.00093 * 3 2 1 5 5 H 1.08001 * 120.00212 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99988 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00069 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 119.99673 * 179.97438 * 6 4 3 9 9 H 1.48495 * 109.47204 * 60.00534 * 8 6 4 10 10 H 1.48503 * 109.46782 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47233 * 300.00195 * 8 6 4 12 12 C 1.39470 * 119.99827 * 179.97438 * 2 1 3 13 13 C 1.39086 * 119.92161 * 0.02562 * 12 2 1 14 14 C 1.37745 * 120.08327 * 179.97438 * 13 12 2 15 15 C 1.39766 * 119.91641 * 359.97438 * 14 13 12 16 16 C 1.47390 * 120.08025 * 179.97438 * 15 14 13 17 17 N 1.29808 * 120.00003 * 179.97438 * 16 15 14 18 18 N 1.40100 * 119.99671 * 179.97438 * 17 16 15 19 19 C 1.34780 * 119.99563 * 180.02562 * 18 17 16 20 20 O 1.21313 * 120.00150 * 0.02562 * 19 18 17 21 21 C 1.50701 * 119.99723 * 180.02562 * 19 18 17 22 22 C 1.50702 * 109.46940 * 180.02562 * 21 19 18 23 23 C 1.38242 * 119.99758 * 269.72539 * 22 21 19 24 24 C 1.38236 * 119.99864 * 179.76645 * 23 22 21 25 25 C 1.38231 * 120.00188 * 0.50871 * 24 23 22 26 26 C 1.38245 * 119.99840 * 359.74110 * 25 24 23 27 27 C 1.38229 * 120.00310 * 89.99605 * 22 21 19 28 28 C 1.39776 * 119.83950 * 359.97197 * 15 14 13 29 29 C 1.37737 * 119.91580 * 0.06997 * 28 15 14 30 30 H 1.09002 * 109.47169 * 269.99684 * 1 2 3 31 31 H 1.09000 * 109.47284 * 29.99954 * 1 2 3 32 32 H 1.09001 * 109.47147 * 150.00019 * 1 2 3 33 33 H 1.09004 * 109.46917 * 30.00373 * 3 2 1 34 34 H 1.09000 * 109.47675 * 149.99688 * 3 2 1 35 35 H 0.96999 * 119.99759 * 179.97438 * 7 6 4 36 36 H 1.08004 * 119.96037 * 359.97438 * 13 12 2 37 37 H 1.08003 * 120.04031 * 179.70022 * 14 13 12 38 38 H 1.08000 * 120.00046 * 359.97438 * 16 15 14 39 39 H 0.96994 * 120.00397 * 0.02562 * 18 17 16 40 40 H 1.09003 * 109.47205 * 299.99710 * 21 19 18 41 41 H 1.09000 * 109.47441 * 60.00156 * 21 19 18 42 42 H 1.08003 * 119.99804 * 359.97438 * 23 22 21 43 43 H 1.08002 * 119.99581 * 180.22839 * 24 23 22 44 44 H 1.07994 * 120.00630 * 179.72835 * 25 24 23 45 45 H 1.07996 * 119.99722 * 179.97438 * 26 25 24 46 46 H 1.08004 * 120.00122 * 0.02562 * 27 22 21 47 47 H 1.08003 * 120.03960 * 180.02562 * 28 15 14 48 48 H 1.08004 * 119.95712 * 179.97438 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4486 1.7037 -1.4207 5 1 2.0981 1.0958 -2.2417 6 6 3.1260 2.8780 -1.6726 7 7 3.5533 3.6180 -0.6730 8 14 3.4380 3.4169 -3.4339 9 1 2.1407 3.5937 -4.1345 10 1 4.1804 4.7030 -3.4338 11 1 4.2413 2.3821 -4.1332 12 6 2.1623 -1.2079 0.0005 13 6 1.4652 -2.4114 0.0005 14 6 2.1505 -3.6063 0.0005 15 6 3.5481 -3.6082 0.0000 16 6 4.2851 -4.8847 0.0006 17 7 5.5832 -4.8846 -0.0004 18 7 6.2836 -6.0980 0.0006 19 6 7.6314 -6.0979 0.0001 20 8 8.2380 -5.0473 -0.0008 21 6 8.3849 -7.4031 0.0007 22 6 9.8665 -7.1277 0.0006 23 6 10.5471 -7.0076 -1.1967 24 6 11.9053 -6.7501 -1.1969 25 6 12.5849 -6.6233 0.0001 26 6 11.9053 -6.7486 1.1975 27 6 10.5461 -7.0008 1.1976 28 6 4.2453 -2.3967 -0.0011 29 6 3.5532 -1.2059 -0.0003 30 1 -0.3633 -0.0001 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3633 -0.8900 -0.5138 33 1 1.6084 2.0283 0.5139 34 1 3.1499 1.1384 0.5139 35 1 4.0302 4.4439 -0.8502 36 1 0.3851 -2.4092 0.0005 37 1 1.6085 -4.5404 0.0054 38 1 3.7451 -5.8200 0.0018 39 1 5.7987 -6.9380 0.0018 40 1 8.1220 -7.9740 0.8912 41 1 8.1213 -7.9753 -0.8888 42 1 10.0170 -7.1115 -2.1319 43 1 12.4363 -6.6526 -2.1323 44 1 13.6468 -6.4266 0.0001 45 1 12.4363 -6.6499 2.1326 46 1 10.0153 -7.0994 2.1330 47 1 5.3253 -2.3945 -0.0020 48 1 4.0912 -0.2694 -0.0007 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005737923.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:54 Heat of formation + Delta-G solvation = 64.889513 kcal Electronic energy + Delta-G solvation = -28162.811423 eV Core-core repulsion = 24183.631332 eV Total energy + Delta-G solvation = -3979.180091 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 351.169 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.14342 -39.09954 -38.78204 -36.70797 -35.42262 -33.27195 -32.81728 -32.03782 -31.11127 -30.60305 -29.21622 -27.89073 -27.56539 -25.34234 -23.49313 -22.82024 -22.22333 -21.94034 -21.07761 -20.55519 -19.60303 -17.60282 -17.12512 -16.83249 -16.64700 -16.46359 -15.90843 -15.42925 -15.05664 -14.76286 -14.75023 -14.35587 -14.15509 -13.85167 -13.79455 -13.63881 -13.33247 -13.01417 -12.96323 -12.79927 -12.68553 -12.31921 -12.17698 -11.70384 -11.54700 -11.41205 -11.33175 -11.26888 -11.24241 -10.97290 -10.71805 -10.39319 -10.19088 -10.04229 -9.98293 -9.80799 -9.40990 -9.11603 -8.96886 -8.52602 -8.46694 -8.38280 -6.50499 -6.05255 -4.19889 1.07232 1.20612 1.29564 2.06102 2.45001 2.50815 3.03652 3.28420 3.33339 3.36504 3.58274 4.03291 4.28033 4.39177 4.52080 4.53921 4.59102 4.77153 4.79246 4.87768 4.92899 5.03332 5.07651 5.20074 5.27455 5.39972 5.40010 5.47902 5.69822 5.73956 5.80708 5.84309 5.96363 5.99295 6.16409 6.22143 6.26271 6.29346 6.32702 6.33701 6.54947 6.76590 6.86185 6.90989 7.02004 7.07283 7.18100 7.29416 7.46558 7.60594 7.77890 8.09394 8.15956 8.35013 8.42714 8.87648 9.47128 10.93834 Molecular weight = 351.17amu Principal moments of inertia in cm(-1) A = 0.010650 B = 0.001868 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.422580 B =14986.681785 C =16886.676053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.605 5.605 3 C 0.245 3.755 4 C -0.535 4.535 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.260 3.740 13 C -0.229 4.229 14 C -0.037 4.037 15 C -0.158 4.158 16 C 0.143 3.857 17 N -0.259 5.259 18 N -0.590 5.590 19 C 0.526 3.474 20 O -0.494 6.494 21 C -0.095 4.095 22 C -0.069 4.069 23 C -0.104 4.104 24 C -0.119 4.119 25 C -0.119 4.119 26 C -0.120 4.120 27 C -0.104 4.104 28 C -0.024 4.024 29 C -0.196 4.196 30 H 0.039 0.961 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.033 0.967 34 H 0.039 0.961 35 H 0.265 0.735 36 H 0.119 0.881 37 H 0.115 0.885 38 H 0.108 0.892 39 H 0.378 0.622 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.120 0.880 47 H 0.126 0.874 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.377 -25.862 3.097 26.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.308 5.308 3 C 0.125 3.875 4 C -0.574 4.574 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.200 1.200 12 C 0.150 3.850 13 C -0.252 4.252 14 C -0.058 4.058 15 C -0.164 4.164 16 C -0.065 4.065 17 N -0.064 5.064 18 N -0.332 5.332 19 C 0.312 3.688 20 O -0.365 6.365 21 C -0.137 4.137 22 C -0.069 4.069 23 C -0.122 4.122 24 C -0.137 4.137 25 C -0.138 4.138 26 C -0.138 4.138 27 C -0.122 4.122 28 C -0.045 4.045 29 C -0.219 4.219 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.137 0.863 37 H 0.133 0.867 38 H 0.125 0.875 39 H 0.216 0.784 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.140 0.860 46 H 0.138 0.862 47 H 0.143 0.857 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 7.743 -24.255 3.146 25.654 hybrid contribution -0.812 -0.612 -1.039 1.454 sum 6.931 -24.867 2.107 25.900 Atomic orbital electron populations 1.21554 0.81185 1.02242 1.00019 1.47236 1.04736 1.04875 1.73965 1.19380 0.92253 0.78548 0.97270 1.21490 1.36902 1.06550 0.92422 0.92222 1.24960 0.95279 0.96257 0.97493 1.69913 1.38020 1.14374 1.30877 0.86563 0.78429 0.77942 0.84588 1.20243 1.21149 1.20001 1.18165 0.91610 0.86083 0.89167 1.20465 0.99235 0.91075 1.14441 1.20697 0.92228 0.97044 0.95871 1.17856 0.92208 0.90192 1.16138 1.24435 0.90361 0.97546 0.94187 1.75134 1.09230 1.05762 1.16260 1.46997 1.06694 1.04962 1.74572 1.20410 0.80207 0.91558 0.76591 1.90777 1.67130 1.33248 1.45351 1.20645 0.92246 0.95304 1.05482 1.19208 0.93213 1.00720 0.93799 1.20997 0.94581 0.99293 0.97309 1.21114 0.94443 0.99983 0.98196 1.21167 0.99962 0.99976 0.92648 1.21114 0.94423 1.00043 0.98180 1.20986 0.94566 0.99330 0.97296 1.21092 0.99739 0.90785 0.92909 1.20905 0.92483 0.99119 1.09360 0.94219 0.91171 0.92399 0.94937 0.94312 0.92491 0.86278 0.86668 0.87514 0.78445 0.87704 0.87695 0.86177 0.86003 0.86120 0.86009 0.86190 0.85656 0.84565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.54 10.18 59.84 0.61 2.15 16 2 N -0.61 -12.42 2.98 -180.96 -0.54 -12.96 16 3 C 0.25 6.02 4.90 -5.20 -0.03 5.99 16 4 C -0.53 -14.43 9.39 -34.44 -0.32 -14.75 16 5 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -25.58 13.29 55.43 0.74 -24.85 16 8 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 12 C 0.26 5.05 6.55 -83.75 -0.55 4.50 16 13 C -0.23 -3.64 9.19 -39.45 -0.36 -4.00 16 14 C -0.04 -0.52 9.78 -39.19 -0.38 -0.90 16 15 C -0.16 -2.44 5.87 -105.03 -0.62 -3.06 16 16 C 0.14 1.86 10.74 -14.68 -0.16 1.70 16 17 N -0.26 -3.93 10.15 32.15 0.33 -3.60 16 18 N -0.59 -6.80 6.26 31.22 0.20 -6.61 16 19 C 0.53 6.64 7.94 -10.98 -0.09 6.55 16 20 O -0.49 -8.94 16.37 5.53 0.09 -8.85 16 21 C -0.10 -0.73 5.83 -29.03 -0.17 -0.90 16 22 C -0.07 -0.68 4.37 -104.62 -0.46 -1.14 16 23 C -0.10 -1.02 9.70 -39.58 -0.38 -1.40 16 24 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 25 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 26 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 27 C -0.10 -1.01 9.70 -39.58 -0.38 -1.39 16 28 C -0.02 -0.44 9.57 -39.19 -0.37 -0.82 16 29 C -0.20 -3.98 9.18 -39.45 -0.36 -4.34 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 32 H 0.06 0.82 6.18 -51.93 -0.32 0.50 16 33 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 34 H 0.04 1.01 6.18 -51.93 -0.32 0.69 16 35 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.12 1.64 6.12 -52.48 -0.32 1.32 16 37 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 38 H 0.11 0.94 8.02 -52.49 -0.42 0.52 16 39 H 0.38 2.67 8.65 -182.60 -1.58 1.09 16 40 H 0.10 0.52 8.08 -51.93 -0.42 0.10 16 41 H 0.10 0.53 8.08 -51.93 -0.42 0.11 16 42 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 43 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 44 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 45 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 46 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 47 H 0.13 2.36 7.55 -52.48 -0.40 1.96 16 48 H 0.14 3.07 6.12 -52.48 -0.32 2.75 16 LS Contribution 412.16 15.07 6.21 6.21 Total: -1.00 -34.65 412.16 -11.18 -45.83 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -7.86 Total: 3.05 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -5.32 Total: -14.61 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: 0.72 Total: -48.02 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.09 Total: -8.85 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.65 -11.18 -45.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005737923.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.723 kcal (2) G-P(sol) polarization free energy of solvation -34.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds