Wall clock time and date at job start Tue Mar 31 2020 06:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46492 * 120.00155 * 2 1 4 4 C 1.50696 * 109.47380 * 270.00093 * 3 2 1 5 5 H 1.08001 * 120.00212 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99988 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00069 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 119.99673 * 179.97438 * 6 4 3 9 9 H 1.48495 * 109.47204 * 60.00534 * 8 6 4 10 10 H 1.48503 * 109.46782 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47233 * 300.00195 * 8 6 4 12 12 C 1.39470 * 119.99827 * 179.97438 * 2 1 3 13 13 C 1.39086 * 119.92161 * 0.02562 * 12 2 1 14 14 C 1.37745 * 120.08327 * 179.97438 * 13 12 2 15 15 C 1.39766 * 119.91641 * 359.97438 * 14 13 12 16 16 C 1.47390 * 120.08025 * 179.97438 * 15 14 13 17 17 N 1.29808 * 120.00003 * 179.97438 * 16 15 14 18 18 N 1.40100 * 119.99671 * 179.97438 * 17 16 15 19 19 C 1.34780 * 119.99563 * 180.02562 * 18 17 16 20 20 O 1.21313 * 120.00150 * 0.02562 * 19 18 17 21 21 C 1.50701 * 119.99723 * 180.02562 * 19 18 17 22 22 C 1.50702 * 109.46940 * 180.02562 * 21 19 18 23 23 C 1.38242 * 119.99758 * 269.72539 * 22 21 19 24 24 C 1.38236 * 119.99864 * 179.76645 * 23 22 21 25 25 C 1.38231 * 120.00188 * 0.50871 * 24 23 22 26 26 C 1.38245 * 119.99840 * 359.74110 * 25 24 23 27 27 C 1.38229 * 120.00310 * 89.99605 * 22 21 19 28 28 C 1.39776 * 119.83950 * 359.97197 * 15 14 13 29 29 C 1.37737 * 119.91580 * 0.06997 * 28 15 14 30 30 H 1.09002 * 109.47169 * 269.99684 * 1 2 3 31 31 H 1.09000 * 109.47284 * 29.99954 * 1 2 3 32 32 H 1.09001 * 109.47147 * 150.00019 * 1 2 3 33 33 H 1.09004 * 109.46917 * 30.00373 * 3 2 1 34 34 H 1.09000 * 109.47675 * 149.99688 * 3 2 1 35 35 H 0.96999 * 119.99759 * 179.97438 * 7 6 4 36 36 H 1.08004 * 119.96037 * 359.97438 * 13 12 2 37 37 H 1.08003 * 120.04031 * 179.70022 * 14 13 12 38 38 H 1.08000 * 120.00046 * 359.97438 * 16 15 14 39 39 H 0.96994 * 120.00397 * 0.02562 * 18 17 16 40 40 H 1.09003 * 109.47205 * 299.99710 * 21 19 18 41 41 H 1.09000 * 109.47441 * 60.00156 * 21 19 18 42 42 H 1.08003 * 119.99804 * 359.97438 * 23 22 21 43 43 H 1.08002 * 119.99581 * 180.22839 * 24 23 22 44 44 H 1.07994 * 120.00630 * 179.72835 * 25 24 23 45 45 H 1.07996 * 119.99722 * 179.97438 * 26 25 24 46 46 H 1.08004 * 120.00122 * 0.02562 * 27 22 21 47 47 H 1.08003 * 120.03960 * 180.02562 * 28 15 14 48 48 H 1.08004 * 119.95712 * 179.97438 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4486 1.7037 -1.4207 5 1 2.0981 1.0958 -2.2417 6 6 3.1260 2.8780 -1.6726 7 7 3.5533 3.6180 -0.6730 8 14 3.4380 3.4169 -3.4339 9 1 2.1407 3.5937 -4.1345 10 1 4.1804 4.7030 -3.4338 11 1 4.2413 2.3821 -4.1332 12 6 2.1623 -1.2079 0.0005 13 6 1.4652 -2.4114 0.0005 14 6 2.1505 -3.6063 0.0005 15 6 3.5481 -3.6082 0.0000 16 6 4.2851 -4.8847 0.0006 17 7 5.5832 -4.8846 -0.0004 18 7 6.2836 -6.0980 0.0006 19 6 7.6314 -6.0979 0.0001 20 8 8.2380 -5.0473 -0.0008 21 6 8.3849 -7.4031 0.0007 22 6 9.8665 -7.1277 0.0006 23 6 10.5471 -7.0076 -1.1967 24 6 11.9053 -6.7501 -1.1969 25 6 12.5849 -6.6233 0.0001 26 6 11.9053 -6.7486 1.1975 27 6 10.5461 -7.0008 1.1976 28 6 4.2453 -2.3967 -0.0011 29 6 3.5532 -1.2059 -0.0003 30 1 -0.3633 -0.0001 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3633 -0.8900 -0.5138 33 1 1.6084 2.0283 0.5139 34 1 3.1499 1.1384 0.5139 35 1 4.0302 4.4439 -0.8502 36 1 0.3851 -2.4092 0.0005 37 1 1.6085 -4.5404 0.0054 38 1 3.7451 -5.8200 0.0018 39 1 5.7987 -6.9380 0.0018 40 1 8.1220 -7.9740 0.8912 41 1 8.1213 -7.9753 -0.8888 42 1 10.0170 -7.1115 -2.1319 43 1 12.4363 -6.6526 -2.1323 44 1 13.6468 -6.4266 0.0001 45 1 12.4363 -6.6499 2.1326 46 1 10.0153 -7.0994 2.1330 47 1 5.3253 -2.3945 -0.0020 48 1 4.0912 -0.2694 -0.0007 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005737923.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:53 Heat of formation + Delta-G solvation = 44.576096 kcal Electronic energy + Delta-G solvation = -28163.692279 eV Core-core repulsion = 24183.631332 eV Total energy + Delta-G solvation = -3980.060947 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 351.169 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.00853 -40.41855 -39.62826 -37.94202 -36.76753 -34.81553 -34.04696 -33.11515 -31.98365 -31.77444 -30.53131 -29.55902 -28.39420 -26.85827 -25.09427 -23.49238 -23.37681 -23.14463 -22.25929 -21.47375 -20.89137 -18.67496 -18.58435 -18.10078 -17.90050 -17.57001 -16.83110 -16.68960 -16.13270 -16.01865 -15.89692 -15.60891 -15.35944 -15.21728 -15.11858 -14.45279 -14.29178 -14.28655 -14.09373 -13.97929 -13.89166 -13.40135 -13.20878 -13.16743 -13.05345 -12.80657 -12.76058 -12.61980 -12.54313 -12.17971 -12.03457 -11.87824 -11.80064 -11.53702 -11.17203 -10.93649 -10.87368 -10.64999 -9.80546 -9.74424 -9.70206 -9.65998 -8.35738 -7.78425 -6.39035 0.12884 0.37682 0.51624 0.71364 1.34903 1.37845 1.38942 1.45871 1.65023 1.98871 2.32573 2.58668 2.88467 3.05001 3.19358 3.59885 3.80086 3.89249 3.93925 4.05799 4.15126 4.20992 4.27236 4.35547 4.37035 4.41684 4.54824 4.61994 4.63602 4.72371 4.73911 4.77049 4.84556 4.88038 5.02402 5.06896 5.11025 5.15347 5.18109 5.31631 5.54583 5.55121 5.62112 5.63998 5.64633 5.66869 5.76239 6.04280 6.10395 6.10938 6.23765 6.44752 6.65615 6.79372 6.87827 7.32403 7.55263 8.81423 Molecular weight = 351.17amu Principal moments of inertia in cm(-1) A = 0.010650 B = 0.001868 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.422580 B =14986.681785 C =16886.676053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.622 5.622 3 C 0.262 3.738 4 C -0.541 4.541 5 H 0.052 0.948 6 C 0.010 3.990 7 N -0.927 5.927 8 Si 0.961 3.039 9 H -0.264 1.264 10 H -0.280 1.280 11 H -0.277 1.277 12 C 0.233 3.767 13 C -0.218 4.218 14 C -0.017 4.017 15 C -0.152 4.152 16 C 0.153 3.847 17 N -0.311 5.311 18 N -0.576 5.576 19 C 0.523 3.477 20 O -0.561 6.561 21 C -0.083 4.083 22 C -0.086 4.086 23 C -0.122 4.122 24 C -0.134 4.134 25 C -0.131 4.131 26 C -0.133 4.133 27 C -0.121 4.121 28 C -0.039 4.039 29 C -0.227 4.227 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.014 0.986 34 H 0.009 0.991 35 H 0.267 0.733 36 H 0.151 0.849 37 H 0.174 0.826 38 H 0.164 0.836 39 H 0.405 0.595 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.130 0.870 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.131 0.869 47 H 0.104 0.896 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.513 -30.159 2.350 30.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.327 5.327 3 C 0.140 3.860 4 C -0.580 4.580 5 H 0.071 0.929 6 C -0.189 4.189 7 N -0.566 5.566 8 Si 0.785 3.215 9 H -0.188 1.188 10 H -0.205 1.205 11 H -0.202 1.202 12 C 0.125 3.875 13 C -0.241 4.241 14 C -0.037 4.037 15 C -0.157 4.157 16 C -0.056 4.056 17 N -0.116 5.116 18 N -0.320 5.320 19 C 0.312 3.688 20 O -0.437 6.437 21 C -0.123 4.123 22 C -0.086 4.086 23 C -0.140 4.140 24 C -0.151 4.151 25 C -0.149 4.149 26 C -0.151 4.151 27 C -0.139 4.139 28 C -0.060 4.060 29 C -0.250 4.250 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.032 0.968 34 H 0.027 0.973 35 H 0.076 0.924 36 H 0.168 0.832 37 H 0.191 0.809 38 H 0.180 0.820 39 H 0.246 0.754 40 H 0.157 0.843 41 H 0.156 0.844 42 H 0.148 0.852 43 H 0.155 0.845 44 H 0.157 0.843 45 H 0.156 0.844 46 H 0.149 0.851 47 H 0.122 0.878 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.831 -28.627 2.401 29.314 hybrid contribution -0.145 0.553 -0.756 0.948 sum 5.686 -28.075 1.645 28.692 Atomic orbital electron populations 1.21720 0.78672 1.03076 1.01457 1.47048 1.06115 1.03708 1.75875 1.18830 0.91187 0.80444 0.95538 1.21745 1.36515 1.06429 0.93332 0.92931 1.25802 0.95127 0.96467 1.01489 1.70029 1.38900 1.14821 1.32884 0.85568 0.78692 0.77425 0.79784 1.18846 1.20527 1.20213 1.18417 0.91171 0.87073 0.90802 1.20846 1.00739 0.89961 1.12565 1.21237 0.91327 0.98550 0.92634 1.18213 0.93451 0.90067 1.13970 1.24578 0.90026 0.98142 0.92815 1.75058 1.11038 1.08826 1.16707 1.46799 1.06518 1.05017 1.73625 1.21390 0.80330 0.92403 0.74702 1.90756 1.68438 1.35928 1.48530 1.20718 0.90063 0.92873 1.08655 1.19525 0.94523 1.00775 0.93809 1.21292 0.95115 0.99618 0.97967 1.21433 0.94708 0.99881 0.99126 1.21485 1.01070 0.99705 0.92599 1.21439 0.94686 0.99854 0.99106 1.21289 0.95096 0.99559 0.97961 1.21007 0.98942 0.91840 0.94228 1.20673 0.93617 0.98159 1.12560 0.92392 0.92454 0.89396 0.96812 0.97318 0.92422 0.83194 0.80856 0.81964 0.75397 0.84314 0.84409 0.85194 0.84495 0.84301 0.84402 0.85087 0.87751 0.89038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.97 10.18 127.77 1.30 4.27 16 2 N -0.62 -26.29 2.98 -726.44 -2.17 -28.46 16 3 C 0.26 13.78 4.90 85.63 0.42 14.20 16 4 C -0.54 -30.65 9.39 25.60 0.24 -30.41 16 5 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 6 C 0.01 0.60 5.46 84.66 0.46 1.06 16 7 N -0.93 -55.61 13.29 21.45 0.28 -55.32 16 8 Si 0.96 45.08 29.54 68.60 2.03 47.11 16 9 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 12 C 0.23 9.17 6.55 38.34 0.25 9.42 16 13 C -0.22 -6.24 9.19 22.36 0.21 -6.03 16 14 C -0.02 -0.39 9.78 22.52 0.22 -0.17 16 15 C -0.15 -4.32 5.87 -20.13 -0.12 -4.44 16 16 C 0.15 3.40 10.74 87.40 0.94 4.34 16 17 N -0.31 -8.93 10.15 -52.21 -0.53 -9.46 16 18 N -0.58 -11.77 6.26 -173.50 -1.09 -12.85 16 19 C 0.52 12.49 7.94 87.66 0.70 13.19 16 20 O -0.56 -20.77 16.37 -3.13 -0.05 -20.82 16 21 C -0.08 -1.05 5.83 29.10 0.17 -0.88 16 22 C -0.09 -1.60 4.37 -19.86 -0.09 -1.69 16 23 C -0.12 -2.32 9.70 22.27 0.22 -2.10 16 24 C -0.13 -2.42 10.05 22.27 0.22 -2.20 16 25 C -0.13 -2.28 10.05 22.27 0.22 -2.05 16 26 C -0.13 -2.37 10.05 22.27 0.22 -2.15 16 27 C -0.12 -2.27 9.70 22.27 0.22 -2.05 16 28 C -0.04 -1.49 9.57 22.52 0.22 -1.28 16 29 C -0.23 -9.91 9.18 22.36 0.21 -9.71 16 30 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.06 1.94 8.07 -2.39 -0.02 1.92 16 32 H 0.09 2.22 6.18 -2.39 -0.01 2.21 16 33 H 0.01 0.76 8.07 -2.38 -0.02 0.74 16 34 H 0.01 0.51 6.18 -2.39 -0.01 0.50 16 35 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 36 H 0.15 3.35 6.12 -2.91 -0.02 3.33 16 37 H 0.17 2.10 8.06 -2.91 -0.02 2.07 16 38 H 0.16 1.74 8.02 -2.91 -0.02 1.71 16 39 H 0.40 3.93 8.65 -213.33 -1.85 2.09 16 40 H 0.14 0.83 8.08 -2.39 -0.02 0.81 16 41 H 0.14 0.85 8.08 -2.39 -0.02 0.83 16 42 H 0.13 2.05 8.06 -2.91 -0.02 2.03 16 43 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 44 H 0.14 1.76 8.06 -2.91 -0.02 1.73 16 45 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 46 H 0.13 2.00 8.06 -2.91 -0.02 1.98 16 47 H 0.10 4.31 7.55 -2.91 -0.02 4.29 16 48 H 0.09 4.70 6.12 -2.91 -0.02 4.68 16 Total: -1.00 -84.16 412.16 3.83 -80.33 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -0.87 Total: 18.16 kcal Atomic # 6 Polarization: -24.90 SS G_CDS: 6.22 Total: -18.68 kcal Atomic # 7 Polarization: -102.60 SS G_CDS: -3.50 Total: -106.10 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.05 Total: -20.82 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -84.16 3.83 -80.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005737923.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.903 kcal (2) G-P(sol) polarization free energy of solvation -84.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds