Wall clock time and date at job start Tue Mar 31 2020 06:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29539 * 1 3 3 Si 1.86799 * 120.00097 * 2 1 4 4 H 1.48490 * 109.47507 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47233 * 300.00328 * 3 2 1 6 6 H 1.48503 * 109.47234 * 59.99679 * 3 2 1 7 7 C 1.46348 * 120.00103 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99914 * 169.82010 * 7 2 1 9 9 N 1.34035 * 119.99728 * 349.81384 * 7 2 1 10 10 C 1.35622 * 124.73987 * 339.48287 * 9 7 2 11 11 C 1.39807 * 109.19010 * 179.82903 * 10 9 7 12 12 C 1.40756 * 126.90635 * 180.16365 * 11 10 9 13 13 N 1.32001 * 119.99965 * 23.21742 * 12 11 10 14 14 N 1.28994 * 120.00503 * 9.61793 * 13 12 11 15 15 C 1.38358 * 120.00471 * 185.59906 * 14 13 12 16 16 C 1.39453 * 119.72142 * 186.07652 * 15 14 13 17 17 C 1.38346 * 119.07392 * 179.75090 * 16 15 14 18 18 C 1.38851 * 118.50289 * 0.51677 * 17 16 15 19 19 N 1.48085 * 120.32080 * 179.74790 * 18 17 16 20 20 O 1.31702 * 120.00044 * 179.97438 * 19 18 17 21 21 O 1.31701 * 120.00152 * 359.97438 * 19 18 17 22 22 C 1.38394 * 119.35319 * 359.72129 * 18 17 16 23 23 N 1.31729 * 120.88466 * 0.03290 * 22 18 17 24 24 C 1.47761 * 106.18605 * 0.41480 * 11 10 9 25 25 C 1.39162 * 133.66434 * 179.74389 * 24 11 10 26 26 C 1.38176 * 119.68788 * 180.02562 * 25 24 11 27 27 C 1.38425 * 120.18400 * 359.97438 * 26 25 24 28 28 C 1.38353 * 120.58339 * 0.02562 * 27 26 25 29 29 C 1.38692 * 120.00413 * 359.97438 * 28 27 26 30 30 H 0.97000 * 120.00147 * 0.02562 * 1 2 3 31 31 H 1.08005 * 125.40725 * 359.97188 * 10 9 7 32 32 H 1.07997 * 119.99870 * 203.21025 * 12 11 10 33 33 H 0.97001 * 119.99590 * 5.59711 * 14 13 12 34 34 H 1.07999 * 120.46516 * 359.97438 * 16 15 14 35 35 H 1.07995 * 120.74745 * 180.21637 * 17 16 15 36 36 H 1.08000 * 119.55655 * 179.97438 * 22 18 17 37 37 H 1.08006 * 120.15258 * 0.02823 * 25 24 11 38 38 H 1.07997 * 119.90624 * 180.02562 * 26 25 24 39 39 H 1.08007 * 119.70959 * 180.02562 * 27 26 25 40 40 H 1.08001 * 119.99809 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2954 0.0000 0.0000 3 14 2.2294 1.6177 0.0000 4 1 3.6893 1.3465 -0.0006 5 1 1.8706 2.3965 -1.2125 6 1 1.8706 2.3965 1.2125 7 6 2.0272 -1.2674 -0.0006 8 1 3.0944 -1.2746 -0.1659 9 7 1.3728 -2.4191 0.2042 10 6 0.1585 -2.5228 0.7993 11 6 -0.2193 -3.8682 0.8411 12 6 -1.4103 -4.3955 1.3747 13 7 -2.4806 -3.6304 1.4828 14 7 -2.4970 -2.4629 0.9345 15 6 -3.5703 -1.6152 1.1439 16 6 -3.6437 -0.4082 0.4494 17 6 -4.7254 0.4269 0.6652 18 6 -5.6949 0.0330 1.5779 19 7 -6.8666 0.8984 1.8441 20 8 -7.7827 0.5183 2.7107 21 8 -6.9928 2.0482 1.2143 22 6 -5.5556 -1.1765 2.2359 23 7 -4.5177 -1.9549 2.0076 24 6 0.8857 -4.6259 0.2181 25 6 1.1044 -5.9780 -0.0283 26 6 2.2731 -6.3808 -0.6458 27 6 3.2220 -5.4443 -1.0181 28 6 3.0143 -4.0977 -0.7776 29 6 1.8470 -3.6757 -0.1589 30 1 -0.4850 0.8400 -0.0004 31 1 -0.4252 -1.6969 1.1784 32 1 -1.4485 -5.4260 1.6956 33 1 -1.7569 -2.1793 0.3753 34 1 -2.8689 -0.1308 -0.2499 35 1 -4.8113 1.3663 0.1394 36 1 -6.3075 -1.4860 2.9467 37 1 0.3640 -6.7090 0.2616 38 1 2.4462 -7.4291 -0.8391 39 1 4.1326 -5.7676 -1.5006 40 1 3.7612 -3.3752 -1.0716 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005741239.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:29 Heat of formation + Delta-G solvation = 173.696397 kcal Electronic energy + Delta-G solvation = -29265.934700 eV Core-core repulsion = 25052.099391 eV Total energy + Delta-G solvation = -4213.835309 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 351.112 amu Computer time = 3.09 seconds Orbital eigenvalues (eV) -41.02161 -40.55036 -38.80360 -37.86519 -36.60582 -34.20952 -34.01012 -33.15399 -32.67947 -31.50439 -29.68885 -29.25163 -28.05288 -26.30548 -25.36587 -24.12789 -22.89958 -22.12792 -21.86858 -21.01990 -19.65151 -18.75332 -18.49797 -17.98980 -17.76942 -16.83729 -16.04415 -15.84354 -15.59379 -15.49745 -14.93857 -14.75851 -14.69192 -14.46794 -14.03482 -13.76689 -13.44255 -13.25553 -13.20393 -13.07162 -12.70395 -12.48724 -11.93323 -11.70215 -11.63432 -11.16003 -11.13689 -11.03138 -10.98609 -10.84360 -10.50967 -10.49280 -10.40666 -10.13205 -9.78081 -9.73510 -9.48203 -9.06638 -7.92217 -7.69600 -7.63446 -6.68056 -4.74297 -0.51665 0.98938 1.12441 1.36554 1.62519 2.07828 2.41407 2.65701 2.72601 2.76074 3.00128 3.32323 3.47598 3.76372 4.14489 4.20024 4.22927 4.39076 4.53988 4.59221 4.67425 5.32453 5.39172 5.43966 5.48248 5.50212 5.55188 5.64409 5.85128 5.86361 5.96755 6.04743 6.15887 6.22949 6.30574 6.46143 6.54089 6.61384 6.69046 6.91186 6.98756 7.01338 7.10394 7.32838 7.46572 7.58928 7.64006 7.68986 8.27498 8.80578 9.06455 9.41676 Molecular weight = 351.11amu Principal moments of inertia in cm(-1) A = 0.011065 B = 0.003174 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.840292 B = 8819.257931 C =11114.053298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.058 3.942 3 Si 0.949 3.051 4 H -0.256 1.256 5 H -0.267 1.267 6 H -0.266 1.266 7 C -0.365 4.365 8 H 0.121 0.879 9 N -0.226 5.226 10 C 0.050 3.950 11 C -0.310 4.310 12 C 0.173 3.827 13 N -0.326 5.326 14 N -0.469 5.469 15 C 0.448 3.552 16 C -0.225 4.225 17 C 0.025 3.975 18 C -0.140 4.140 19 N 0.014 4.986 20 O -0.204 6.204 21 O -0.209 6.209 22 C 0.236 3.764 23 N -0.497 5.497 24 C -0.054 4.054 25 C -0.100 4.100 26 C -0.140 4.140 27 C -0.147 4.147 28 C -0.088 4.088 29 C 0.025 3.975 30 H 0.296 0.704 31 H 0.181 0.819 32 H 0.161 0.839 33 H 0.413 0.587 34 H 0.161 0.839 35 H 0.161 0.839 36 H 0.182 0.818 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.177 -2.314 -1.149 2.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.160 4.160 3 Si 0.771 3.229 4 H -0.179 1.179 5 H -0.192 1.192 6 H -0.191 1.191 7 C -0.495 4.495 8 H 0.138 0.862 9 N 0.119 4.881 10 C -0.100 4.100 11 C -0.321 4.321 12 C -0.023 4.023 13 N -0.141 5.141 14 N -0.193 5.193 15 C 0.210 3.790 16 C -0.251 4.251 17 C 0.000 4.000 18 C -0.236 4.236 19 N 0.481 4.519 20 O -0.390 6.390 21 O -0.393 6.393 22 C 0.067 3.933 23 N -0.215 5.215 24 C -0.060 4.060 25 C -0.119 4.119 26 C -0.159 4.159 27 C -0.167 4.167 28 C -0.108 4.108 29 C -0.080 4.080 30 H 0.109 0.891 31 H 0.197 0.803 32 H 0.178 0.822 33 H 0.265 0.735 34 H 0.179 0.821 35 H 0.178 0.822 36 H 0.199 0.801 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.913 -3.072 -0.571 3.255 hybrid contribution 1.123 2.066 -0.996 2.554 sum 2.036 -1.005 -1.566 2.758 Atomic orbital electron populations 1.68796 1.08440 1.31297 1.35416 1.27112 0.95162 1.01200 0.92541 0.85484 0.80313 0.77841 0.79248 1.17897 1.19176 1.19110 1.21129 0.94410 0.81602 1.52345 0.86158 1.39210 1.12766 1.04156 1.31960 1.23194 0.90483 0.95895 1.00388 1.18658 0.98918 0.92312 1.22238 1.22866 0.86677 0.98232 0.94526 1.72373 1.25950 0.95361 1.20461 1.43444 1.18991 1.12724 1.44099 1.18573 0.86130 0.86549 0.87762 1.21554 1.01825 0.94924 1.06794 1.21085 0.88942 0.99004 0.90996 1.21243 0.92260 0.97139 1.12921 1.50173 1.01686 1.01504 0.98570 1.96242 1.35117 1.78829 1.28810 1.96243 1.85612 1.06809 1.50680 1.22692 0.93045 0.85467 0.92066 1.67863 1.02485 1.32315 1.18798 1.18778 0.93631 0.92318 1.01252 1.20329 0.97398 0.93495 1.00708 1.20724 0.94806 0.98480 1.01918 1.20571 0.99721 0.92071 1.04331 1.20063 0.95198 0.95626 0.99915 1.18507 0.97702 0.85153 1.06638 0.89095 0.80261 0.82169 0.73496 0.82120 0.82167 0.80143 0.86915 0.87052 0.86922 0.87060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -15.74 10.83 55.97 0.61 -15.14 16 2 C 0.06 1.14 5.53 -15.26 -0.08 1.06 16 3 Si 0.95 15.20 29.65 -169.99 -5.04 10.16 16 4 H -0.26 -4.08 7.11 56.52 0.40 -3.68 16 5 H -0.27 -4.26 7.11 56.52 0.40 -3.85 16 6 H -0.27 -4.32 7.11 56.52 0.40 -3.91 16 7 C -0.36 -7.74 10.08 -13.33 -0.13 -7.87 16 8 H 0.12 2.44 7.89 -52.49 -0.41 2.02 16 9 N -0.23 -4.89 2.82 -57.09 -0.16 -5.05 16 10 C 0.05 1.04 7.92 -15.29 -0.12 0.92 16 11 C -0.31 -6.09 5.78 -104.47 -0.60 -6.69 16 12 C 0.17 3.03 11.33 -16.53 -0.19 2.85 16 13 N -0.33 -6.04 10.72 31.01 0.33 -5.71 16 14 N -0.47 -8.49 5.14 31.10 0.16 -8.33 16 15 C 0.45 7.48 7.55 -155.34 -1.17 6.31 16 16 C -0.22 -3.22 9.95 -39.09 -0.39 -3.60 16 17 C 0.03 0.34 9.69 -39.31 -0.38 -0.04 16 18 C -0.14 -2.05 6.92 -79.63 -0.55 -2.61 16 19 N 0.01 0.23 4.99 34.12 0.17 0.40 16 20 O -0.20 -3.46 19.18 -31.57 -0.61 -4.06 16 21 O -0.21 -3.59 19.23 -31.57 -0.61 -4.20 16 22 C 0.24 3.39 10.74 -17.54 -0.19 3.20 16 23 N -0.50 -8.21 9.88 -12.43 -0.12 -8.33 16 24 C -0.05 -1.05 6.32 -104.88 -0.66 -1.72 16 25 C -0.10 -1.66 10.10 -39.26 -0.40 -2.06 16 26 C -0.14 -2.12 10.04 -39.54 -0.40 -2.52 16 27 C -0.15 -2.29 10.03 -39.47 -0.40 -2.68 16 28 C -0.09 -1.59 9.90 -39.37 -0.39 -1.98 16 29 C 0.03 0.52 6.70 -83.60 -0.56 -0.04 16 30 H 0.30 5.14 8.27 -40.82 -0.34 4.80 16 31 H 0.18 3.80 4.58 -52.48 -0.24 3.56 16 32 H 0.16 2.31 8.06 -52.49 -0.42 1.89 16 33 H 0.41 7.73 4.69 -190.12 -0.89 6.84 16 34 H 0.16 2.18 8.06 -52.49 -0.42 1.75 16 35 H 0.16 1.82 7.66 -52.49 -0.40 1.42 16 36 H 0.18 2.18 7.58 -52.49 -0.40 1.79 16 37 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 38 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 39 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 40 H 0.11 1.85 7.99 -52.49 -0.42 1.43 16 LS Contribution 361.28 15.07 5.44 5.44 Total: -1.00 -24.72 361.28 -10.45 -35.17 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: -4.01 Total: 17.12 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -6.62 Total: -17.48 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: 0.99 Total: -42.17 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: -1.21 Total: -8.26 kcal Atomic # 14 Polarization: 15.20 SS G_CDS: -5.04 Total: 10.16 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -24.72 -10.45 -35.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005741239.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.870 kcal (2) G-P(sol) polarization free energy of solvation -24.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 184.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 173.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.09 seconds