Wall clock time and date at job start Tue Mar 31 2020 06:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29539 * 1 3 3 Si 1.86799 * 120.00097 * 2 1 4 4 H 1.48490 * 109.47507 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47233 * 300.00328 * 3 2 1 6 6 H 1.48503 * 109.47234 * 59.99679 * 3 2 1 7 7 C 1.46348 * 120.00103 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99914 * 169.82010 * 7 2 1 9 9 N 1.34035 * 119.99728 * 349.81384 * 7 2 1 10 10 C 1.35622 * 124.73987 * 339.48287 * 9 7 2 11 11 C 1.39807 * 109.19010 * 179.82903 * 10 9 7 12 12 C 1.40756 * 126.90635 * 180.16365 * 11 10 9 13 13 N 1.32001 * 119.99965 * 23.21742 * 12 11 10 14 14 N 1.28994 * 120.00503 * 9.61793 * 13 12 11 15 15 C 1.38358 * 120.00471 * 185.59906 * 14 13 12 16 16 C 1.39453 * 119.72142 * 186.07652 * 15 14 13 17 17 C 1.38346 * 119.07392 * 179.75090 * 16 15 14 18 18 C 1.38851 * 118.50289 * 0.51677 * 17 16 15 19 19 N 1.48085 * 120.32080 * 179.74790 * 18 17 16 20 20 O 1.31702 * 120.00044 * 179.97438 * 19 18 17 21 21 O 1.31701 * 120.00152 * 359.97438 * 19 18 17 22 22 C 1.38394 * 119.35319 * 359.72129 * 18 17 16 23 23 N 1.31729 * 120.88466 * 0.03290 * 22 18 17 24 24 C 1.47761 * 106.18605 * 0.41480 * 11 10 9 25 25 C 1.39162 * 133.66434 * 179.74389 * 24 11 10 26 26 C 1.38176 * 119.68788 * 180.02562 * 25 24 11 27 27 C 1.38425 * 120.18400 * 359.97438 * 26 25 24 28 28 C 1.38353 * 120.58339 * 0.02562 * 27 26 25 29 29 C 1.38692 * 120.00413 * 359.97438 * 28 27 26 30 30 H 0.97000 * 120.00147 * 0.02562 * 1 2 3 31 31 H 1.08005 * 125.40725 * 359.97188 * 10 9 7 32 32 H 1.07997 * 119.99870 * 203.21025 * 12 11 10 33 33 H 0.97001 * 119.99590 * 5.59711 * 14 13 12 34 34 H 1.07999 * 120.46516 * 359.97438 * 16 15 14 35 35 H 1.07995 * 120.74745 * 180.21637 * 17 16 15 36 36 H 1.08000 * 119.55655 * 179.97438 * 22 18 17 37 37 H 1.08006 * 120.15258 * 0.02823 * 25 24 11 38 38 H 1.07997 * 119.90624 * 180.02562 * 26 25 24 39 39 H 1.08007 * 119.70959 * 180.02562 * 27 26 25 40 40 H 1.08001 * 119.99809 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2954 0.0000 0.0000 3 14 2.2294 1.6177 0.0000 4 1 3.6893 1.3465 -0.0006 5 1 1.8706 2.3965 -1.2125 6 1 1.8706 2.3965 1.2125 7 6 2.0272 -1.2674 -0.0006 8 1 3.0944 -1.2746 -0.1659 9 7 1.3728 -2.4191 0.2042 10 6 0.1585 -2.5228 0.7993 11 6 -0.2193 -3.8682 0.8411 12 6 -1.4103 -4.3955 1.3747 13 7 -2.4806 -3.6304 1.4828 14 7 -2.4970 -2.4629 0.9345 15 6 -3.5703 -1.6152 1.1439 16 6 -3.6437 -0.4082 0.4494 17 6 -4.7254 0.4269 0.6652 18 6 -5.6949 0.0330 1.5779 19 7 -6.8666 0.8984 1.8441 20 8 -7.7827 0.5183 2.7107 21 8 -6.9928 2.0482 1.2143 22 6 -5.5556 -1.1765 2.2359 23 7 -4.5177 -1.9549 2.0076 24 6 0.8857 -4.6259 0.2181 25 6 1.1044 -5.9780 -0.0283 26 6 2.2731 -6.3808 -0.6458 27 6 3.2220 -5.4443 -1.0181 28 6 3.0143 -4.0977 -0.7776 29 6 1.8470 -3.6757 -0.1589 30 1 -0.4850 0.8400 -0.0004 31 1 -0.4252 -1.6969 1.1784 32 1 -1.4485 -5.4260 1.6956 33 1 -1.7569 -2.1793 0.3753 34 1 -2.8689 -0.1308 -0.2499 35 1 -4.8113 1.3663 0.1394 36 1 -6.3075 -1.4860 2.9467 37 1 0.3640 -6.7090 0.2616 38 1 2.4462 -7.4291 -0.8391 39 1 4.1326 -5.7676 -1.5006 40 1 3.7612 -3.3752 -1.0716 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005741239.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:28 Heat of formation + Delta-G solvation = 164.990165 kcal Electronic energy + Delta-G solvation = -29266.312231 eV Core-core repulsion = 25052.099391 eV Total energy + Delta-G solvation = -4214.212839 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 351.112 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.35441 -41.87214 -40.12027 -39.17564 -37.94210 -35.52164 -35.41081 -34.51277 -33.90876 -32.85228 -30.98313 -30.60042 -29.42774 -27.63076 -26.75671 -25.38269 -24.19998 -23.46663 -23.19952 -22.37683 -21.01672 -20.11895 -19.74819 -19.29880 -19.09291 -18.24927 -17.31871 -17.12325 -16.97985 -16.77600 -16.23273 -16.06092 -16.00121 -15.72547 -15.48109 -14.98403 -14.74667 -14.55500 -14.45154 -14.29960 -14.00121 -13.87439 -13.30361 -13.11655 -12.96153 -12.46577 -12.45077 -12.31860 -12.29714 -12.15396 -11.84993 -11.78276 -11.68191 -11.40161 -11.14544 -11.03049 -10.84311 -10.41563 -9.25863 -9.06883 -9.06264 -8.11219 -6.25697 -1.81829 -0.22530 -0.10833 0.09305 0.27893 0.76861 1.07210 1.32639 1.45590 1.46551 1.71374 2.00029 2.16235 2.43180 2.70220 2.80335 2.99871 3.21041 3.23854 3.35699 3.48260 4.01254 4.15594 4.18705 4.26499 4.32243 4.36105 4.39640 4.58642 4.59976 4.65837 4.73973 4.79175 4.89987 4.98700 5.09486 5.23364 5.27037 5.34104 5.51050 5.65592 5.71761 5.82001 5.98878 6.11099 6.15453 6.30226 6.43814 6.80894 7.33223 7.68873 7.99507 Molecular weight = 351.11amu Principal moments of inertia in cm(-1) A = 0.011065 B = 0.003174 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.840292 B = 8819.257931 C =11114.053298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.030 3.970 3 Si 1.009 2.991 4 H -0.257 1.257 5 H -0.261 1.261 6 H -0.266 1.266 7 C -0.404 4.404 8 H 0.116 0.884 9 N -0.241 5.241 10 C 0.028 3.972 11 C -0.315 4.315 12 C 0.171 3.829 13 N -0.335 5.335 14 N -0.481 5.481 15 C 0.436 3.564 16 C -0.220 4.220 17 C 0.040 3.960 18 C -0.139 4.139 19 N 0.016 4.984 20 O -0.211 6.211 21 O -0.223 6.223 22 C 0.242 3.758 23 N -0.515 5.515 24 C -0.076 4.076 25 C -0.105 4.105 26 C -0.134 4.134 27 C -0.136 4.136 28 C -0.113 4.113 29 C -0.009 4.009 30 H 0.305 0.695 31 H 0.173 0.827 32 H 0.191 0.809 33 H 0.408 0.592 34 H 0.167 0.833 35 H 0.185 0.815 36 H 0.203 0.797 37 H 0.139 0.861 38 H 0.151 0.849 39 H 0.147 0.853 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.273 -3.172 -1.554 3.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.187 4.187 3 Si 0.829 3.171 4 H -0.181 1.181 5 H -0.186 1.186 6 H -0.191 1.191 7 C -0.533 4.533 8 H 0.134 0.866 9 N 0.103 4.897 10 C -0.120 4.120 11 C -0.327 4.327 12 C -0.026 4.026 13 N -0.150 5.150 14 N -0.205 5.205 15 C 0.199 3.801 16 C -0.247 4.247 17 C 0.014 3.986 18 C -0.235 4.235 19 N 0.480 4.520 20 O -0.397 6.397 21 O -0.405 6.405 22 C 0.074 3.926 23 N -0.233 5.233 24 C -0.082 4.082 25 C -0.124 4.124 26 C -0.153 4.153 27 C -0.155 4.155 28 C -0.133 4.133 29 C -0.114 4.114 30 H 0.118 0.882 31 H 0.189 0.811 32 H 0.208 0.792 33 H 0.260 0.740 34 H 0.185 0.815 35 H 0.202 0.798 36 H 0.220 0.780 37 H 0.157 0.843 38 H 0.169 0.831 39 H 0.164 0.836 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.970 -3.912 -0.977 4.147 hybrid contribution 1.033 2.227 -0.874 2.606 sum 2.003 -1.684 -1.851 3.205 Atomic orbital electron populations 1.68819 1.09111 1.32350 1.34943 1.27863 0.95947 1.03043 0.91869 0.84626 0.79051 0.74337 0.79110 1.18059 1.18581 1.19113 1.21350 0.94695 0.82630 1.54635 0.86624 1.39351 1.13101 1.04640 1.32628 1.23243 0.90815 0.96502 1.01448 1.18879 0.99653 0.91939 1.22183 1.23271 0.85733 0.99338 0.94210 1.72319 1.26444 0.95741 1.20501 1.43492 1.19448 1.12934 1.44619 1.18874 0.86001 0.87077 0.88180 1.21592 1.02225 0.94222 1.06612 1.21327 0.87762 0.99404 0.90095 1.21390 0.91931 0.97045 1.13168 1.50314 1.01864 1.01482 0.98301 1.96240 1.35556 1.78831 1.29050 1.96243 1.85894 1.07300 1.51059 1.23012 0.92689 0.85005 0.91875 1.67867 1.03046 1.33147 1.19254 1.19112 0.93479 0.93592 1.02011 1.20729 0.98674 0.92679 1.00320 1.21213 0.93651 1.00354 1.00091 1.21036 1.00864 0.90959 1.02654 1.20325 0.94906 0.97122 1.00940 1.19045 0.99155 0.85235 1.07999 0.88235 0.81064 0.79203 0.74036 0.81513 0.79798 0.78014 0.84283 0.83106 0.83552 0.86929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -32.80 10.83 23.17 0.25 -32.55 16 2 C 0.03 1.19 5.53 87.14 0.48 1.67 16 3 Si 1.01 31.44 29.65 68.60 2.03 33.47 16 4 H -0.26 -7.97 7.11 99.48 0.71 -7.26 16 5 H -0.26 -7.83 7.11 99.48 0.71 -7.12 16 6 H -0.27 -8.22 7.11 99.48 0.71 -7.51 16 7 C -0.40 -18.01 10.08 86.47 0.87 -17.13 16 8 H 0.12 4.99 7.89 -2.91 -0.02 4.97 16 9 N -0.24 -10.96 2.82 -334.54 -0.94 -11.90 16 10 C 0.03 1.25 7.92 84.49 0.67 1.92 16 11 C -0.31 -12.64 5.78 -19.76 -0.11 -12.75 16 12 C 0.17 5.99 11.33 85.28 0.97 6.96 16 13 N -0.33 -12.46 10.72 -55.81 -0.60 -13.06 16 14 N -0.48 -17.71 5.14 -55.52 -0.29 -18.00 16 15 C 0.44 14.49 7.55 133.29 1.01 15.50 16 16 C -0.22 -6.17 9.95 22.59 0.22 -5.94 16 17 C 0.04 1.00 9.69 22.44 0.22 1.22 16 18 C -0.14 -3.88 6.92 36.55 0.25 -3.63 16 19 N 0.02 0.50 4.99 -45.97 -0.23 0.27 16 20 O -0.21 -6.85 19.18 3.51 0.07 -6.79 16 21 O -0.22 -7.33 19.23 3.51 0.07 -7.26 16 22 C 0.24 6.64 10.74 84.75 0.91 7.55 16 23 N -0.52 -16.70 9.88 -193.24 -1.91 -18.61 16 24 C -0.08 -2.99 6.32 -20.03 -0.13 -3.11 16 25 C -0.11 -3.29 10.10 22.48 0.23 -3.06 16 26 C -0.13 -3.63 10.04 22.30 0.22 -3.41 16 27 C -0.14 -3.91 10.03 22.34 0.22 -3.69 16 28 C -0.11 -4.09 9.90 22.41 0.22 -3.87 16 29 C -0.01 -0.40 6.70 38.60 0.26 -0.14 16 30 H 0.30 10.66 8.27 -92.71 -0.77 9.89 16 31 H 0.17 7.62 4.58 -2.91 -0.01 7.61 16 32 H 0.19 5.23 8.06 -2.91 -0.02 5.21 16 33 H 0.41 15.82 4.69 -219.72 -1.03 14.79 16 34 H 0.17 4.48 8.06 -2.91 -0.02 4.46 16 35 H 0.18 3.75 7.66 -2.91 -0.02 3.73 16 36 H 0.20 4.54 7.58 -2.91 -0.02 4.52 16 37 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 38 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 39 H 0.15 3.17 8.06 -2.91 -0.02 3.14 16 40 H 0.11 3.87 7.99 -2.91 -0.02 3.84 16 Total: -1.00 -54.83 361.28 5.07 -49.75 By element: Atomic # 1 Polarization: 46.49 SS G_CDS: 0.10 Total: 46.59 kcal Atomic # 6 Polarization: -28.44 SS G_CDS: 6.51 Total: -21.92 kcal Atomic # 7 Polarization: -90.13 SS G_CDS: -3.71 Total: -93.84 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: 0.13 Total: -14.05 kcal Atomic # 14 Polarization: 31.44 SS G_CDS: 2.03 Total: 33.47 kcal Total: -54.83 5.07 -49.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005741239.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.745 kcal (2) G-P(sol) polarization free energy of solvation -54.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds