Wall clock time and date at job start Tue Mar 31 2020 05:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36763 * 127.14204 * 2 1 4 4 N 1.30297 * 107.31610 * 180.02562 * 3 2 1 5 5 N 1.28517 * 110.08113 * 359.76202 * 4 3 2 6 6 C 1.31287 * 109.85838 * 0.39669 * 5 4 3 7 7 S 1.76195 * 126.48638 * 179.88303 * 6 5 4 8 8 C 1.81002 * 100.00245 * 359.68535 * 7 6 5 9 9 C 1.50699 * 109.47475 * 180.02562 * 8 7 6 10 10 O 1.21300 * 119.99586 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00304 * 179.97438 * 9 8 7 12 12 C 1.39932 * 120.00318 * 175.95546 * 11 9 8 13 13 C 1.38691 * 120.11258 * 34.42849 * 12 11 9 14 14 C 1.38215 * 120.01768 * 180.25261 * 13 12 11 15 15 C 1.38390 * 120.25290 * 359.74022 * 14 13 12 16 16 C 1.38087 * 120.22887 * 359.97438 * 15 14 13 17 17 C 1.38991 * 119.97805 * 0.02562 * 16 15 14 18 18 S 1.76199 * 120.12591 * 179.97438 * 17 16 15 19 19 C 1.76193 * 99.99987 * 6.86354 * 18 17 16 20 20 H 1.08003 * 120.00396 * 354.89892 * 19 18 17 21 21 C 1.38681 * 120.00109 * 174.89138 * 19 18 17 22 22 N 1.31658 * 120.00072 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00162 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47178 * 60.00657 * 23 21 19 25 25 H 1.48502 * 109.47189 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47349 * 300.00259 * 23 21 19 27 27 H 1.09000 * 109.46843 * 269.99740 * 1 2 3 28 28 H 1.08992 * 109.47226 * 29.99969 * 1 2 3 29 29 H 1.08999 * 109.46938 * 150.00313 * 1 2 3 30 30 H 1.07997 * 126.34244 * 0.02562 * 3 2 1 31 31 H 1.09002 * 109.47150 * 59.99855 * 8 7 6 32 32 H 1.09000 * 109.46574 * 300.00170 * 8 7 6 33 33 H 0.96999 * 119.99824 * 355.96143 * 11 9 8 34 34 H 1.08000 * 119.98660 * 359.97394 * 13 12 11 35 35 H 1.08007 * 119.87382 * 179.76933 * 14 13 12 36 36 H 1.08004 * 119.88787 * 180.02562 * 15 14 13 37 37 H 1.08000 * 120.01364 * 180.02562 * 16 15 14 38 38 H 0.96999 * 119.99736 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2908 1.0902 0.0000 4 7 3.5165 0.6483 -0.0006 5 7 3.5223 -0.6369 0.0041 6 6 2.2895 -1.0884 -0.0006 7 16 1.7928 -2.7789 0.0000 8 6 3.4144 -3.5830 -0.0012 9 6 3.2334 -5.0790 -0.0015 10 8 2.1176 -5.5549 -0.0004 11 7 4.3111 -5.8883 -0.0029 12 6 4.1449 -7.2751 0.0824 13 6 3.0512 -7.8829 -0.5159 14 6 2.8862 -9.2522 -0.4261 15 6 3.8121 -10.0228 0.2551 16 6 4.9080 -9.4292 0.8496 17 6 5.0833 -8.0529 0.7652 18 16 6.4799 -7.2913 1.5229 19 6 7.3719 -8.7235 2.0302 20 1 6.9386 -9.7041 1.8991 21 6 8.6303 -8.5918 2.5977 22 7 9.1584 -7.3965 2.7579 23 14 9.5763 -10.1104 3.1349 24 1 9.8023 -10.9933 1.9625 25 1 10.8845 -9.7021 3.7069 26 1 8.7941 -10.8430 4.1629 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8899 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 1.9838 2.1256 0.0004 31 1 3.9690 -3.2839 0.8883 32 1 3.9674 -3.2841 -0.8917 33 1 5.2020 -5.5094 -0.0628 34 1 2.3259 -7.2854 -1.0482 35 1 2.0316 -9.7227 -0.8896 36 1 3.6776 -11.0924 0.3213 37 1 5.6287 -10.0340 1.3800 38 1 10.0385 -7.3044 3.1552 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006063515.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:22 Heat of formation + Delta-G solvation = 80.995981 kcal Electronic energy + Delta-G solvation = -24154.923373 eV Core-core repulsion = 20444.857912 eV Total energy + Delta-G solvation = -3710.065462 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 350.061 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.09242 -40.18036 -37.83556 -35.31910 -34.51208 -32.78002 -31.30619 -30.58952 -30.34719 -28.24970 -28.01852 -25.90500 -23.13646 -22.71795 -22.47027 -22.04381 -20.22986 -18.60913 -18.24462 -17.00722 -16.94058 -16.71067 -16.42097 -16.03720 -15.62801 -15.46453 -15.13427 -14.37017 -14.26875 -13.99621 -13.86301 -13.72273 -13.38996 -13.11179 -12.97207 -12.87097 -12.29224 -11.92560 -11.72172 -11.40869 -11.24417 -11.21981 -11.10593 -10.63947 -10.52215 -10.43694 -10.32742 -10.16314 -9.97166 -9.61588 -9.54197 -8.80123 -8.70441 -7.93193 -7.78048 -6.58139 -6.54434 -4.26871 0.69299 1.34233 1.67268 1.77944 2.03623 2.28365 2.56188 2.65328 2.99733 3.10901 3.15020 3.21479 3.36215 3.96089 4.12730 4.26618 4.38156 4.57093 4.58727 4.85742 4.85764 4.87991 4.88743 5.05107 5.20146 5.30568 5.58614 5.62817 5.63777 5.83038 6.10249 6.16792 6.35931 6.50246 6.77784 6.82546 7.04021 7.17028 7.41587 7.57915 7.62934 8.10574 8.17489 8.34371 8.93746 10.52512 Molecular weight = 350.06amu Principal moments of inertia in cm(-1) A = 0.013824 B = 0.002512 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.952826 B =11143.210745 C =13001.868944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.469 5.469 3 C 0.156 3.844 4 N -0.286 5.286 5 N -0.293 5.293 6 C 0.142 3.858 7 S 0.082 5.918 8 C -0.145 4.145 9 C 0.533 3.467 10 O -0.519 6.519 11 N -0.647 5.647 12 C 0.117 3.883 13 C -0.099 4.099 14 C -0.150 4.150 15 C -0.111 4.111 16 C -0.131 4.131 17 C -0.100 4.100 18 S 0.040 5.960 19 C -0.549 4.549 20 H 0.095 0.905 21 C 0.078 3.922 22 N -0.864 5.864 23 Si 0.925 3.075 24 H -0.270 1.270 25 H -0.281 1.281 26 H -0.270 1.270 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.223 0.777 31 H 0.132 0.868 32 H 0.129 0.871 33 H 0.415 0.585 34 H 0.131 0.869 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.139 0.861 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.705 11.985 -6.615 21.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.164 5.164 3 C -0.134 4.134 4 N -0.125 5.125 5 N -0.138 5.138 6 C -0.233 4.233 7 S 0.309 5.691 8 C -0.297 4.297 9 C 0.317 3.683 10 O -0.396 6.396 11 N -0.291 5.291 12 C 0.015 3.985 13 C -0.120 4.120 14 C -0.174 4.174 15 C -0.131 4.131 16 C -0.157 4.157 17 C -0.217 4.217 18 S 0.295 5.705 19 C -0.696 4.696 20 H 0.112 0.888 21 C -0.132 4.132 22 N -0.497 5.497 23 Si 0.750 3.250 24 H -0.195 1.195 25 H -0.206 1.206 26 H -0.195 1.195 27 H 0.105 0.895 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.239 0.761 31 H 0.151 0.849 32 H 0.147 0.853 33 H 0.252 0.748 34 H 0.148 0.852 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.157 0.843 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.352 12.625 -6.244 21.581 hybrid contribution 0.614 -1.191 0.229 1.359 sum -15.738 11.434 -6.015 20.362 Atomic orbital electron populations 1.22180 0.74730 1.05540 1.04644 1.46517 1.08989 1.05279 1.55578 1.26741 0.86571 0.94716 1.05403 1.73937 1.18319 1.03153 1.17087 1.74730 1.15509 1.03304 1.20255 1.27378 0.90459 0.97407 1.08060 1.86028 1.06777 0.83784 1.92541 1.23704 1.00225 0.95469 1.10255 1.19537 0.85012 0.86934 0.76771 1.90721 1.23833 1.76079 1.48925 1.43160 1.09813 1.05033 1.71137 1.17094 0.98262 0.81157 1.02009 1.20956 0.97250 0.94644 0.99188 1.20746 1.00096 0.93349 1.03235 1.20994 0.94718 0.99019 0.98410 1.21299 0.98831 0.93635 1.01933 1.22554 1.01802 0.97202 1.00182 1.83190 1.11680 1.12903 1.62734 1.23234 1.04622 0.93758 1.47956 0.88768 1.25093 0.96281 0.97565 0.94291 1.69986 1.17297 1.22178 1.40284 0.86105 0.78575 0.81100 0.79246 1.19464 1.20566 1.19479 0.89499 0.88565 0.88743 0.76115 0.84945 0.85271 0.74763 0.85154 0.86908 0.87003 0.84347 0.91545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.29 11.09 59.85 0.66 0.95 16 2 N -0.47 -4.08 3.21 -125.58 -0.40 -4.48 16 3 C 0.16 1.38 12.80 -88.95 -1.14 0.24 16 4 N -0.29 -3.86 12.17 29.90 0.36 -3.49 16 5 N -0.29 -4.23 11.60 30.68 0.36 -3.87 16 6 C 0.14 1.68 8.07 -88.34 -0.71 0.97 16 7 S 0.08 0.93 20.94 -107.50 -2.25 -1.32 16 8 C -0.14 -1.75 5.72 36.01 0.21 -1.55 16 9 C 0.53 8.05 7.69 -10.99 -0.08 7.96 16 10 O -0.52 -8.97 13.28 5.54 0.07 -8.90 16 11 N -0.65 -10.62 5.03 -9.70 -0.05 -10.67 16 12 C 0.12 2.23 6.32 -83.44 -0.53 1.71 16 13 C -0.10 -1.77 8.70 -39.42 -0.34 -2.12 16 14 C -0.15 -2.51 10.04 -39.53 -0.40 -2.91 16 15 C -0.11 -1.93 10.03 -39.58 -0.40 -2.33 16 16 C -0.13 -2.68 9.26 -39.36 -0.36 -3.04 16 17 C -0.10 -2.14 6.12 -38.75 -0.24 -2.37 16 18 S 0.04 0.96 20.53 -107.50 -2.21 -1.25 16 19 C -0.55 -14.35 9.07 30.90 0.28 -14.07 16 20 H 0.09 2.36 4.83 -52.48 -0.25 2.10 16 21 C 0.08 2.05 5.49 -17.46 -0.10 1.95 16 22 N -0.86 -23.72 13.22 55.48 0.73 -22.99 16 23 Si 0.92 20.07 29.55 -169.99 -5.02 15.05 16 24 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 25 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 27 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.10 0.12 8.14 -51.93 -0.42 -0.31 16 29 H 0.09 0.37 7.86 -51.93 -0.41 -0.03 16 30 H 0.22 0.83 8.06 -52.49 -0.42 0.41 16 31 H 0.13 1.57 8.14 -51.92 -0.42 1.15 16 32 H 0.13 1.38 8.14 -51.92 -0.42 0.96 16 33 H 0.41 6.34 7.95 -40.82 -0.32 6.01 16 34 H 0.13 2.26 6.19 -52.49 -0.32 1.93 16 35 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 36 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 37 H 0.14 2.92 4.95 -52.49 -0.26 2.66 16 38 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 358.09 15.07 5.40 5.40 Total: -1.00 -33.82 358.09 -9.82 -43.64 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -3.66 Total: 7.49 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -3.15 Total: -14.61 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: 1.00 Total: -45.51 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.07 Total: -8.90 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -4.46 Total: -2.57 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.82 -9.82 -43.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006063515.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.640 kcal (2) G-P(sol) polarization free energy of solvation -33.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds