Wall clock time and date at job start Tue Mar 31 2020 06:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00559 * 2 1 4 4 H 1.48500 * 109.47261 * 270.00085 * 3 2 1 5 5 H 1.48498 * 109.46473 * 29.99836 * 3 2 1 6 6 H 1.48492 * 109.47274 * 149.99750 * 3 2 1 7 7 C 1.37880 * 119.99992 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00394 * 179.97438 * 7 2 1 9 9 C 1.50710 * 119.99837 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46911 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99819 * 88.19851 * 10 9 7 12 12 S 1.71203 * 119.99965 * 4.89818 * 11 10 9 13 13 N 1.34773 * 120.00297 * 184.90355 * 11 10 9 14 14 C 1.40000 * 119.99870 * 288.09350 * 13 11 10 15 15 C 1.38861 * 120.04583 * 174.28746 * 14 13 11 16 16 C 1.38114 * 119.95261 * 180.27471 * 15 14 13 17 17 C 1.38471 * 120.04702 * 359.51319 * 16 15 14 18 18 F 1.35100 * 119.95541 * 180.23436 * 17 16 15 19 19 C 1.38476 * 120.09335 * 0.46455 * 17 16 15 20 20 C 1.38120 * 120.04125 * 359.79100 * 19 17 16 21 21 N 1.36600 * 120.00302 * 268.18828 * 10 9 7 22 22 C 1.48001 * 110.99346 * 76.05757 * 21 10 9 23 23 C 1.50452 * 112.82244 * 191.34355 * 22 21 10 24 24 C 1.54306 * 108.49752 * 93.73029 * 23 22 21 25 25 C 1.45880 * 112.18585 * 281.46204 * 24 23 22 26 26 C 1.54310 * 112.18566 * 61.12426 * 25 24 23 27 27 C 1.47993 * 110.99996 * 307.33939 * 21 10 9 28 28 H 0.97004 * 119.99829 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46744 * 60.00224 * 9 7 2 30 30 H 1.08998 * 109.46683 * 299.99834 * 9 7 2 31 31 H 0.97003 * 119.99850 * 108.08347 * 13 11 10 32 32 H 1.07999 * 120.02550 * 359.97438 * 15 14 13 33 33 H 1.07997 * 119.97779 * 179.74382 * 16 15 14 34 34 H 1.07993 * 119.97969 * 179.77006 * 19 17 16 35 35 H 1.07998 * 120.01639 * 179.97438 * 20 19 17 36 36 H 1.08997 * 108.81797 * 312.20654 * 22 21 10 37 37 H 1.09006 * 108.81321 * 70.48404 * 22 21 10 38 38 H 1.08996 * 109.63410 * 334.02452 * 23 22 21 39 39 H 1.08998 * 109.62832 * 213.43430 * 23 22 21 40 40 H 1.08998 * 108.94174 * 160.76588 * 24 23 22 41 41 H 1.09006 * 108.94359 * 42.16053 * 24 23 22 42 42 H 1.08999 * 108.93766 * 300.42731 * 25 24 23 43 43 H 1.09001 * 108.94002 * 181.82271 * 25 24 23 44 44 H 1.08992 * 109.63181 * 161.76007 * 26 25 24 45 45 H 1.09006 * 109.63147 * 41.16149 * 26 25 24 46 46 H 1.09006 * 108.80783 * 205.69491 * 27 21 10 47 47 H 1.08999 * 108.81408 * 324.08014 * 27 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6687 -4.1011 1.1672 12 16 2.0546 -3.5059 2.6504 13 7 3.6179 -5.0578 1.1663 14 6 3.2957 -6.3631 0.7762 15 6 4.2946 -7.3208 0.6607 16 6 3.9753 -8.6066 0.2701 17 6 2.6589 -8.9436 0.0037 18 9 2.3481 -10.2030 -0.3736 19 6 1.6612 -7.9902 0.1187 20 6 1.9769 -6.7019 0.5039 21 7 2.6183 -4.1562 -1.1818 22 6 3.6070 -3.2804 -1.8496 23 6 3.8892 -3.6944 -3.2682 24 6 2.9618 -2.8930 -4.2057 25 6 1.6067 -3.4326 -4.2331 26 6 0.9351 -3.3919 -2.8444 27 6 1.4635 -4.5377 -2.0250 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8897 30 1 0.6240 -2.5567 0.8903 31 1 4.5244 -4.8419 1.4358 32 1 5.3210 -7.0592 0.8713 33 1 4.7524 -9.3506 0.1762 34 1 0.6357 -8.2541 -0.0931 35 1 1.1986 -5.9586 0.5931 36 1 3.2276 -2.2586 -1.8505 37 1 4.5385 -3.3066 -1.2839 38 1 3.6946 -4.7606 -3.3842 39 1 4.9298 -3.4805 -3.5120 40 1 3.3726 -2.9171 -5.2150 41 1 2.9237 -1.8581 -3.8657 42 1 1.6443 -4.4660 -4.5777 43 1 1.0079 -2.8497 -4.9329 44 1 -0.1446 -3.4892 -2.9569 45 1 1.1714 -2.4491 -2.3509 46 1 1.7690 -5.3393 -2.6976 47 1 0.6644 -4.9052 -1.3812 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006512097.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:17 Heat of formation + Delta-G solvation = 51.924615 kcal Electronic energy + Delta-G solvation = -30688.908028 eV Core-core repulsion = 26721.149382 eV Total energy + Delta-G solvation = -3967.758645 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 351.148 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -48.70990 -40.55419 -39.23030 -37.19873 -35.20418 -33.15727 -32.14039 -31.71691 -31.11409 -29.16636 -27.91498 -26.06928 -24.89249 -24.04703 -22.97631 -22.29821 -21.42629 -20.43726 -19.54452 -17.97532 -17.72854 -17.34386 -17.07777 -16.49369 -16.11671 -15.77370 -15.48759 -15.43729 -14.81030 -14.41667 -14.12313 -13.90005 -13.57235 -13.54351 -13.16669 -13.00338 -12.92100 -12.87964 -12.74343 -12.30405 -12.21239 -11.91188 -11.63699 -11.37143 -11.04787 -11.01999 -10.97147 -10.74386 -10.55055 -10.51520 -10.37438 -10.28219 -10.12943 -9.89883 -9.36252 -9.09955 -8.66902 -8.47634 -7.57489 -7.21225 -6.62509 -6.26482 -4.32420 1.19648 1.27051 1.52529 2.37017 3.16383 3.26158 3.26459 3.29815 3.49115 3.80838 4.24749 4.41448 4.48014 4.72620 4.78776 4.84269 4.87012 4.99974 5.09806 5.18091 5.23029 5.28980 5.35733 5.43314 5.61860 5.66971 5.73300 5.83621 5.86776 5.89208 6.09259 6.13189 6.17365 6.18930 6.19880 6.21529 6.26728 6.30690 6.39091 6.54635 6.67374 6.79224 6.87093 7.09342 7.17463 7.29565 7.52872 7.64498 7.86290 8.23054 8.66074 9.31440 10.81144 Molecular weight = 351.15amu Principal moments of inertia in cm(-1) A = 0.011568 B = 0.004361 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.812308 B = 6418.917627 C = 7735.612559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.074 3.926 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.524 4.524 8 H 0.058 0.942 9 C 0.191 3.809 10 N -0.351 5.351 11 C 0.575 3.425 12 S -0.585 6.585 13 N -0.677 5.677 14 C 0.221 3.779 15 C -0.151 4.151 16 C -0.111 4.111 17 C 0.042 3.958 18 F -0.149 7.149 19 C -0.108 4.108 20 C -0.136 4.136 21 N -0.332 5.332 22 C 0.037 3.963 23 C -0.113 4.113 24 C -0.123 4.123 25 C -0.113 4.113 26 C -0.168 4.168 27 C 0.053 3.947 28 H 0.267 0.733 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.420 0.580 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.127 0.873 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.066 0.934 42 H 0.055 0.945 43 H 0.058 0.942 44 H 0.070 0.930 45 H 0.104 0.896 46 H 0.087 0.913 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.019 -12.955 -8.447 16.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.131 4.131 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.563 4.563 8 H 0.076 0.924 9 C 0.070 3.930 10 N -0.137 5.137 11 C 0.224 3.776 12 S -0.453 6.453 13 N -0.311 5.311 14 C 0.118 3.882 15 C -0.174 4.174 16 C -0.131 4.131 17 C 0.021 3.979 18 F -0.128 7.128 19 C -0.127 4.127 20 C -0.158 4.158 21 N -0.149 5.149 22 C -0.090 4.090 23 C -0.151 4.151 24 C -0.160 4.160 25 C -0.150 4.150 26 C -0.206 4.206 27 C -0.074 4.074 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.261 0.739 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.144 0.856 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.122 0.878 46 H 0.105 0.895 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.466 -12.694 -7.644 16.167 hybrid contribution 0.670 1.317 -1.079 1.829 sum 7.136 -11.377 -8.723 16.014 Atomic orbital electron populations 1.69902 1.05936 1.27482 1.48633 1.24811 0.94846 0.99016 0.94409 0.86481 0.80072 0.82940 0.77953 1.20715 1.20805 1.19683 1.20998 0.92902 0.89286 1.53140 0.92381 1.20841 0.88511 0.81495 1.02106 1.48596 1.37811 1.27235 1.00102 1.22054 0.83814 0.82630 0.89139 1.93178 1.65478 1.71553 1.15107 1.41736 1.12106 1.05509 1.71733 1.17681 0.93420 0.83778 0.93332 1.20372 0.98481 0.92292 1.06209 1.20776 0.94759 0.96891 1.00651 1.17454 0.93836 0.79938 1.06661 1.91450 1.93807 1.37972 1.89583 1.20830 0.99078 0.92291 1.00525 1.20528 0.94925 0.96476 1.03892 1.63361 1.13547 1.39113 0.98834 1.22371 0.94489 0.97985 0.94150 1.21369 0.99428 1.00753 0.93585 1.20630 0.95532 1.00530 0.99350 1.20515 0.96328 1.00860 0.97327 1.22320 1.00529 1.01627 0.96138 1.22264 0.91668 0.97794 0.95688 0.92348 0.92331 0.89925 0.73876 0.85113 0.84979 0.84999 0.85563 0.89962 0.91461 0.91041 0.91049 0.92446 0.91520 0.92611 0.92345 0.91141 0.87763 0.89528 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.85 13.29 55.43 0.74 -23.11 16 2 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 3 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.52 -12.93 7.75 -34.43 -0.27 -13.20 16 8 H 0.06 1.46 7.33 -52.49 -0.38 1.07 16 9 C 0.19 4.28 4.07 -5.19 -0.02 4.26 16 10 N -0.35 -6.44 1.96 -63.21 -0.12 -6.56 16 11 C 0.57 10.74 5.61 -86.92 -0.49 10.25 16 12 S -0.59 -13.61 28.82 -107.50 -3.10 -16.71 16 13 N -0.68 -10.03 4.96 -11.39 -0.06 -10.08 16 14 C 0.22 2.97 6.04 -83.67 -0.51 2.46 16 15 C -0.15 -1.66 9.90 -39.40 -0.39 -2.05 16 16 C -0.11 -1.20 10.02 -39.54 -0.40 -1.60 16 17 C 0.04 0.51 7.30 -39.41 -0.29 0.23 16 18 F -0.15 -1.90 17.26 2.25 0.04 -1.86 16 19 C -0.11 -1.35 10.02 -39.54 -0.40 -1.74 16 20 C -0.14 -1.90 8.60 -39.40 -0.34 -2.24 16 21 N -0.33 -4.98 3.41 -114.90 -0.39 -5.37 16 22 C 0.04 0.54 5.06 -4.49 -0.02 0.51 16 23 C -0.11 -1.30 5.63 -27.32 -0.15 -1.45 16 24 C -0.12 -1.44 5.30 -29.42 -0.16 -1.59 16 25 C -0.11 -1.33 5.30 -29.41 -0.16 -1.49 16 26 C -0.17 -2.40 4.44 -27.32 -0.12 -2.53 16 27 C 0.05 0.73 4.66 -4.49 -0.02 0.71 16 28 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.06 1.31 4.29 -51.93 -0.22 1.09 16 30 H 0.08 2.17 6.55 -51.93 -0.34 1.83 16 31 H 0.42 5.41 8.83 -40.82 -0.36 5.04 16 32 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 34 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.13 2.03 6.51 -52.49 -0.34 1.69 16 36 H 0.08 1.46 4.41 -51.93 -0.23 1.23 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.07 0.80 7.08 -51.93 -0.37 0.43 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.90 7.52 -51.93 -0.39 0.51 16 42 H 0.06 0.59 7.52 -51.93 -0.39 0.20 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.10 1.90 4.61 -51.93 -0.24 1.66 16 46 H 0.09 1.05 6.59 -51.93 -0.34 0.71 16 47 H 0.07 1.07 7.67 -51.93 -0.40 0.67 16 LS Contribution 377.79 15.07 5.69 5.69 Total: -1.00 -28.48 377.79 -12.56 -41.04 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -6.52 Total: 9.24 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -3.82 Total: -7.67 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: 0.16 Total: -45.13 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: -13.61 SS G_CDS: -3.10 Total: -16.71 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -28.48 -12.56 -41.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006512097.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.967 kcal (2) G-P(sol) polarization free energy of solvation -28.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds