Wall clock time and date at job start Tue Mar 31 2020 05:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31738 * 118.59446 * 2 1 4 4 C 1.33421 * 121.11182 * 179.97438 * 3 2 1 5 5 S 1.76202 * 120.99423 * 179.97438 * 4 3 2 6 6 C 1.76199 * 99.99915 * 0.02621 * 5 4 3 7 7 H 1.07997 * 120.00091 * 359.97438 * 6 5 4 8 8 C 1.38875 * 119.99974 * 180.02562 * 6 5 4 9 9 N 1.31490 * 120.00067 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99951 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47057 * 89.99942 * 10 8 6 12 12 H 1.48498 * 109.47157 * 210.00254 * 10 8 6 13 13 H 1.48503 * 109.47508 * 330.00260 * 10 8 6 14 14 C 1.40315 * 118.01885 * 0.02562 * 4 3 2 15 15 C 1.40806 * 118.73330 * 359.97438 * 14 4 3 16 16 N 1.32029 * 118.59289 * 180.02562 * 2 1 3 17 17 N 1.37806 * 118.71893 * 180.02562 * 15 14 4 18 18 C 1.46501 * 119.70093 * 180.02562 * 17 15 14 19 19 C 1.52999 * 109.47268 * 89.99894 * 18 17 15 20 20 C 1.52999 * 109.47170 * 174.99919 * 19 18 17 21 21 C 1.52998 * 109.47005 * 295.00352 * 19 18 17 22 22 C 1.34469 * 120.60410 * 0.02673 * 17 15 14 23 23 O 1.21562 * 118.54680 * 179.97438 * 22 17 15 24 24 N 1.34244 * 122.90273 * 359.95465 * 22 17 15 25 25 C 1.46503 * 119.42473 * 180.02562 * 24 22 17 26 26 C 1.35216 * 121.14410 * 0.31612 * 24 22 17 27 27 O 1.21654 * 120.96495 * 179.70862 * 26 24 22 28 28 H 1.09002 * 109.46704 * 90.00197 * 1 2 3 29 29 H 1.08998 * 109.47274 * 209.99823 * 1 2 3 30 30 H 1.09000 * 109.47152 * 330.00336 * 1 2 3 31 31 H 0.96991 * 119.99988 * 180.02562 * 9 8 6 32 32 H 1.09001 * 109.47256 * 210.00363 * 18 17 15 33 33 H 1.09002 * 109.47033 * 330.00294 * 18 17 15 34 34 H 1.09002 * 109.46927 * 55.00482 * 19 18 17 35 35 H 1.09002 * 109.46736 * 60.00447 * 20 19 18 36 36 H 1.09001 * 109.47252 * 179.97438 * 20 19 18 37 37 H 1.08992 * 109.47581 * 300.00674 * 20 19 18 38 38 H 1.08998 * 109.46987 * 299.99593 * 21 19 18 39 39 H 1.08992 * 109.47241 * 60.00005 * 21 19 18 40 40 H 1.09003 * 109.46603 * 180.02562 * 21 19 18 41 41 H 1.08999 * 109.47118 * 90.00393 * 25 24 22 42 42 H 1.09006 * 109.46643 * 210.00120 * 25 24 22 43 43 H 1.08994 * 109.47446 * 330.00061 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1376 1.1567 0.0000 4 6 3.4705 1.2153 0.0005 5 16 4.3106 2.7641 -0.0002 6 6 2.9312 3.8604 -0.0007 7 1 1.9266 3.4642 -0.0009 8 6 3.1359 5.2340 -0.0018 9 7 4.3591 5.7164 -0.0020 10 14 1.6736 6.3962 -0.0031 11 1 1.2858 6.7054 1.3966 12 1 2.0405 7.6528 -0.7042 13 1 0.5317 5.7544 -0.7027 14 6 4.1834 0.0068 0.0005 15 6 3.4639 -1.2036 0.0005 16 7 2.1389 -1.1593 -0.0005 17 7 4.1644 -2.3903 0.0010 18 6 3.4374 -3.6623 0.0005 19 6 3.1854 -4.1051 -1.4422 20 6 2.5380 -5.4913 -1.4445 21 6 2.2518 -3.1049 -2.1269 22 6 5.5091 -2.3916 0.0021 23 8 6.0890 -3.4600 0.0030 24 7 6.2393 -1.2652 0.0018 25 6 7.7016 -1.3554 0.0024 26 6 5.6487 -0.0488 0.0067 27 8 6.3137 0.9699 0.0117 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 4.5021 6.6758 -0.0024 32 1 4.0294 -4.4194 0.5148 33 1 2.4840 -3.5361 0.5135 34 1 4.1324 -4.1455 -1.9805 35 1 1.5910 -5.4509 -0.9062 36 1 2.3580 -5.8066 -2.4723 37 1 3.2030 -6.2038 -0.9566 38 1 1.3049 -3.0646 -1.5886 39 1 2.7131 -2.1174 -2.1253 40 1 2.0719 -3.4207 -3.1546 41 1 8.0646 -1.3783 -1.0251 42 1 8.1188 -0.4892 0.5160 43 1 8.0092 -2.2658 0.5168 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000009722355.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:30 Heat of formation + Delta-G solvation = -9.190235 kcal Electronic energy + Delta-G solvation = -29623.781226 eV Core-core repulsion = 25602.885220 eV Total energy + Delta-G solvation = -4020.896006 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 350.120 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.14706 -39.83596 -38.94531 -37.06457 -35.32876 -34.49552 -32.97676 -32.90514 -31.64514 -29.28877 -27.24390 -27.15462 -26.28807 -25.97799 -24.47207 -23.32946 -22.57559 -20.40809 -19.36102 -18.71155 -18.24853 -17.59220 -16.91905 -16.34647 -15.99649 -15.28581 -15.21573 -15.09881 -14.99317 -14.68421 -14.46000 -14.11313 -13.60451 -13.39287 -13.04112 -12.99683 -12.92078 -12.37667 -12.26906 -12.26706 -12.19160 -11.98521 -11.57632 -11.52225 -11.34962 -11.31342 -11.18552 -11.14534 -10.82793 -10.74995 -10.53097 -10.33136 -9.96387 -9.86721 -9.60605 -9.31550 -8.72706 -8.62171 -8.51005 -7.23679 -6.72036 -4.42776 0.89156 1.45168 2.00676 2.30114 2.72968 3.04995 3.05616 3.10921 3.17930 3.27922 3.81352 4.21668 4.24010 4.46385 4.67764 4.75434 4.79380 4.84895 4.99306 5.13404 5.22131 5.34210 5.45254 5.46613 5.49485 5.57413 5.59618 5.64417 5.73322 5.76016 5.78311 5.79739 5.85713 5.88058 6.03519 6.04347 6.16829 6.31811 6.34099 6.45746 6.79898 7.32594 7.36105 7.53268 7.70355 8.14578 8.18012 8.66425 8.78982 10.31984 Molecular weight = 350.12amu Principal moments of inertia in cm(-1) A = 0.013680 B = 0.004019 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.222705 B = 6965.066628 C = 8725.644467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.378 3.622 3 N -0.532 5.532 4 C 0.163 3.837 5 S 0.293 5.707 6 C -0.573 4.573 7 H 0.114 0.886 8 C 0.080 3.920 9 N -0.857 5.857 10 Si 0.932 3.068 11 H -0.271 1.271 12 H -0.279 1.279 13 H -0.263 1.263 14 C -0.337 4.337 15 C 0.461 3.539 16 N -0.590 5.590 17 N -0.523 5.523 18 C 0.126 3.874 19 C -0.109 4.109 20 C -0.140 4.140 21 C -0.137 4.137 22 C 0.711 3.289 23 O -0.550 6.550 24 N -0.563 5.563 25 C 0.084 3.916 26 C 0.561 3.439 27 O -0.477 6.477 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.281 0.719 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.048 0.952 40 H 0.046 0.954 41 H 0.070 0.930 42 H 0.093 0.907 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.973 -15.429 -0.839 15.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.103 3.897 3 N -0.255 5.255 4 C -0.089 4.089 5 S 0.550 5.450 6 C -0.720 4.720 7 H 0.132 0.868 8 C -0.132 4.132 9 N -0.488 5.488 10 Si 0.757 3.243 11 H -0.196 1.196 12 H -0.204 1.204 13 H -0.187 1.187 14 C -0.362 4.362 15 C 0.218 3.782 16 N -0.320 5.320 17 N -0.248 5.248 18 C 0.005 3.995 19 C -0.128 4.128 20 C -0.198 4.198 21 C -0.195 4.195 22 C 0.413 3.587 23 O -0.424 6.424 24 N -0.308 5.308 25 C -0.058 4.058 26 C 0.354 3.646 27 O -0.350 6.350 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.111 0.889 33 H 0.121 0.879 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.088 0.912 42 H 0.111 0.889 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.739 -14.679 -0.832 14.805 hybrid contribution -1.165 0.376 -0.066 1.226 sum -2.904 -14.304 -0.898 14.623 Atomic orbital electron populations 1.20530 0.86214 1.03721 1.03515 1.23088 0.97441 0.82824 0.86335 1.68901 1.07695 1.27471 1.21400 1.24538 0.92229 1.00031 0.92092 1.84506 1.06682 0.85757 1.68007 1.24132 0.97690 0.93228 1.56986 0.86787 1.25277 0.97592 0.97826 0.92523 1.69908 1.20585 1.15256 1.43097 0.85923 0.80813 0.78628 0.78956 1.19643 1.20440 1.18739 1.19853 0.93043 0.94131 1.29136 1.18133 0.89757 0.83800 0.86479 1.67782 1.05517 1.30279 1.28411 1.44514 1.04149 1.06884 1.69209 1.21853 0.97348 0.82077 0.98203 1.21446 0.99876 0.95952 0.95574 1.21718 1.00672 0.95349 1.02029 1.21819 0.99962 0.98330 0.99347 1.15462 0.80787 0.84484 0.77925 1.90943 1.68250 1.28150 1.55084 1.46129 1.09799 1.06122 1.68712 1.21844 0.75655 1.04629 1.03633 1.17978 0.87642 0.82384 0.76600 1.90845 1.65513 1.32111 1.46581 0.89864 0.90078 0.89605 0.90931 0.88877 0.87911 0.91132 0.92262 0.92373 0.92525 0.91348 0.93279 0.93514 0.91182 0.88885 0.89326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 10.29 36.01 0.37 -0.67 16 2 C 0.38 6.64 7.63 -157.04 -1.20 5.44 16 3 N -0.53 -11.30 8.54 -9.24 -0.08 -11.38 16 4 C 0.16 3.65 7.04 -16.08 -0.11 3.54 16 5 S 0.29 7.31 19.10 -107.50 -2.05 5.25 16 6 C -0.57 -14.97 9.29 30.97 0.29 -14.68 16 7 H 0.11 2.96 6.60 -52.49 -0.35 2.61 16 8 C 0.08 2.05 5.49 -17.46 -0.10 1.95 16 9 N -0.86 -22.88 13.22 55.49 0.73 -22.14 16 10 Si 0.93 19.68 29.55 -169.99 -5.02 14.65 16 11 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 12 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 13 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 14 C -0.34 -6.86 5.90 -104.76 -0.62 -7.48 16 15 C 0.46 8.18 5.89 -155.39 -0.91 7.27 16 16 N -0.59 -9.83 7.43 -9.89 -0.07 -9.90 16 17 N -0.52 -8.19 2.51 -120.89 -0.30 -8.49 16 18 C 0.13 1.57 4.67 -4.04 -0.02 1.55 16 19 C -0.11 -1.24 3.12 -90.62 -0.28 -1.52 16 20 C -0.14 -1.21 9.19 37.16 0.34 -0.87 16 21 C -0.14 -1.68 7.91 37.16 0.29 -1.39 16 22 C 0.71 11.70 8.10 -87.67 -0.71 10.99 16 23 O -0.55 -9.23 15.09 5.31 0.08 -9.15 16 24 N -0.56 -9.41 2.96 -129.75 -0.38 -9.80 16 25 C 0.08 1.10 10.09 59.85 0.60 1.71 16 26 C 0.56 11.02 7.62 -12.67 -0.10 10.93 16 27 O -0.48 -10.31 14.01 5.23 0.07 -10.23 16 28 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.09 1.10 7.33 -51.93 -0.38 0.72 16 33 H 0.10 1.21 7.46 -51.93 -0.39 0.83 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.81 7.91 -51.93 -0.41 0.40 16 39 H 0.05 0.74 6.03 -51.93 -0.31 0.43 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.09 1.19 7.42 -51.93 -0.39 0.81 16 43 H 0.09 1.05 7.31 -51.93 -0.38 0.67 16 LS Contribution 367.60 15.07 5.54 5.54 Total: -1.00 -29.55 367.60 -9.18 -38.73 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -5.54 Total: 0.15 kcal Atomic # 6 Polarization: 18.92 SS G_CDS: -2.15 Total: 16.77 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: -0.11 Total: -61.71 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: 0.15 Total: -19.38 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.65 kcal Atomic # 16 Polarization: 7.31 SS G_CDS: -2.05 Total: 5.25 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.55 -9.18 -38.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009722355.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.542 kcal (2) G-P(sol) polarization free energy of solvation -29.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds