Wall clock time and date at job start Tue Mar 31 2020 06:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35836 * 117.00356 * 2 1 4 4 C 1.38854 * 119.93780 * 179.97438 * 3 2 1 5 5 C 1.37880 * 120.06450 * 179.74749 * 4 3 2 6 6 C 1.39392 * 119.93245 * 0.25129 * 5 4 3 7 7 C 1.48350 * 120.06231 * 179.97438 * 6 5 4 8 8 N 1.30860 * 126.34090 * 359.69422 * 7 6 5 9 9 O 1.21265 * 110.32939 * 179.79942 * 8 7 6 10 10 C 1.34073 * 109.97374 * 0.46914 * 9 8 7 11 11 N 1.37531 * 126.55511 * 179.73033 * 10 9 8 12 12 C 1.46509 * 119.99884 * 354.29995 * 11 10 9 13 13 C 1.50692 * 109.47070 * 89.99918 * 12 11 10 14 14 H 1.08002 * 120.00257 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99866 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99980 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00039 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47454 * 59.99875 * 17 15 13 19 19 H 1.48506 * 109.47282 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47488 * 299.99520 * 17 15 13 21 21 C 1.39837 * 120.00436 * 174.29439 * 11 10 9 22 22 C 1.38897 * 120.07343 * 111.93421 * 21 11 10 23 23 C 1.38107 * 119.93189 * 179.81365 * 22 21 11 24 24 C 1.38286 * 120.06757 * 0.44498 * 23 22 21 25 25 C 1.38292 * 120.14997 * 359.78832 * 24 23 22 26 26 C 1.38110 * 120.06969 * 359.97438 * 25 24 23 27 27 N 1.31985 * 106.89593 * 359.71043 * 10 9 8 28 28 C 1.39394 * 119.87551 * 0.02562 * 6 5 4 29 29 C 1.37876 * 119.93690 * 359.97438 * 28 6 5 30 30 H 1.08997 * 109.47284 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47064 * 300.00279 * 1 2 3 32 32 H 1.08998 * 109.46867 * 59.99639 * 1 2 3 33 33 H 1.07995 * 119.97292 * 0.02792 * 4 3 2 34 34 H 1.07994 * 120.03140 * 180.23560 * 5 4 3 35 35 H 1.08999 * 109.47167 * 210.00132 * 12 11 10 36 36 H 1.09004 * 109.46668 * 329.99629 * 12 11 10 37 37 H 0.96998 * 119.99712 * 180.02562 * 16 15 13 38 38 H 1.08007 * 120.03575 * 0.02687 * 22 21 11 39 39 H 1.07995 * 119.97044 * 180.23211 * 23 22 21 40 40 H 1.08000 * 119.92679 * 179.76112 * 24 23 22 41 41 H 1.07995 * 119.96671 * 179.97438 * 25 24 23 42 42 H 1.07993 * 120.03548 * 179.97438 * 26 25 24 43 43 H 1.08001 * 120.03019 * 179.97438 * 28 6 5 44 44 H 1.07999 * 119.96607 * 180.02562 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2103 0.0000 4 6 3.4325 1.2813 0.0005 5 6 4.0612 2.5084 -0.0047 6 6 3.3033 3.6783 -0.0053 7 6 3.9769 5.0001 -0.0104 8 7 5.2681 5.2125 -0.0090 9 8 5.4993 6.4029 -0.0182 10 6 4.3496 7.0927 -0.0164 11 7 4.2156 8.4614 -0.0196 12 6 5.4012 9.3138 0.1004 13 6 5.9436 9.6160 -1.2726 14 1 5.4545 9.2132 -2.1472 15 6 7.0650 10.4060 -1.4124 16 7 7.6609 10.8962 -0.3473 17 14 7.7378 10.7801 -3.1143 18 1 6.7018 11.4834 -3.9127 19 1 8.9395 11.6441 -2.9927 20 1 8.1069 9.5106 -3.7908 21 6 2.9479 9.0397 -0.1374 22 6 2.3946 9.7284 0.9344 23 6 1.1440 10.3017 0.8135 24 6 0.4388 10.1827 -0.3700 25 6 0.9846 9.4935 -1.4375 26 6 2.2369 8.9221 -1.3248 27 7 3.3709 6.2072 -0.0113 28 6 1.9114 3.6039 0.0000 29 6 1.2881 2.3740 0.0053 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 4.0192 0.3747 0.0005 34 1 5.1398 2.5631 -0.0081 35 1 5.1302 10.2454 0.5972 36 1 6.1619 8.7977 0.6862 37 1 8.4496 11.4522 -0.4457 38 1 2.9434 9.8186 1.8603 39 1 0.7148 10.8406 1.6452 40 1 -0.5407 10.6286 -0.4608 41 1 0.4310 9.4020 -2.3603 42 1 2.6624 8.3836 -2.1586 43 1 1.3217 4.5087 0.0000 44 1 0.2097 2.3158 0.0090 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000009831713.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:13 Heat of formation + Delta-G solvation = 101.956672 kcal Electronic energy + Delta-G solvation = -29543.366123 eV Core-core repulsion = 25429.960290 eV Total energy + Delta-G solvation = -4113.405833 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.137 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.58422 -40.25354 -39.29289 -37.73812 -36.37650 -34.82660 -32.90529 -31.52757 -31.26421 -30.64293 -30.01610 -29.20683 -27.61921 -26.99467 -24.16566 -23.59405 -22.93352 -22.45029 -22.11756 -21.49290 -20.13087 -18.39442 -17.91918 -17.44246 -16.89402 -16.50648 -16.25915 -15.98743 -15.79611 -15.47296 -15.05637 -14.73159 -14.45809 -14.21705 -13.85321 -13.73885 -13.48990 -13.14982 -13.06064 -12.71399 -12.46041 -12.25742 -12.17957 -11.79417 -11.72186 -11.66936 -11.60933 -11.21735 -11.02518 -10.95863 -10.85653 -10.79337 -10.43463 -10.30791 -10.24747 -9.64391 -9.15859 -8.68080 -8.63643 -8.59620 -8.16958 -7.43433 -6.23219 -4.31602 0.90867 1.24205 1.52865 1.70138 2.19419 2.66106 2.97558 3.01214 3.24203 3.28407 3.31912 3.83055 3.88990 4.06641 4.28867 4.39198 4.62915 4.70995 4.81902 4.85824 4.97037 5.11338 5.15102 5.19377 5.21349 5.23984 5.33905 5.38353 5.53735 5.68197 5.71683 5.83652 5.91695 6.00840 6.13440 6.27316 6.33058 6.40461 6.53130 6.60287 6.63335 6.74597 6.76168 6.81916 7.01670 7.12651 7.15146 7.50629 7.73292 7.85909 7.90874 8.69845 8.97552 9.35482 10.83610 Molecular weight = 351.14amu Principal moments of inertia in cm(-1) A = 0.010653 B = 0.002909 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.816589 B = 9622.190873 C =11428.097864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.317 6.317 3 C 0.135 3.865 4 C -0.155 4.155 5 C -0.046 4.046 6 C -0.042 4.042 7 C 0.230 3.770 8 N -0.402 5.402 9 O 0.053 5.947 10 C 0.454 3.546 11 N -0.502 5.502 12 C 0.251 3.749 13 C -0.542 4.542 14 H 0.062 0.938 15 C 0.069 3.931 16 N -0.890 5.890 17 Si 0.901 3.099 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.274 1.274 21 C 0.183 3.817 22 C -0.116 4.116 23 C -0.112 4.112 24 C -0.129 4.129 25 C -0.112 4.112 26 C -0.102 4.102 27 N -0.545 5.545 28 C -0.035 4.035 29 C -0.213 4.213 30 H 0.099 0.901 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.052 0.948 36 H 0.045 0.955 37 H 0.268 0.732 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.139 0.861 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.908 -12.598 1.971 20.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.230 6.230 3 C 0.089 3.911 4 C -0.174 4.174 5 C -0.066 4.066 6 C -0.044 4.044 7 C -0.041 4.041 8 N -0.124 5.124 9 O 0.006 5.994 10 C 0.148 3.852 11 N -0.222 5.222 12 C 0.134 3.866 13 C -0.581 4.581 14 H 0.080 0.920 15 C -0.135 4.135 16 N -0.527 5.527 17 Si 0.728 3.272 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.199 1.199 21 C 0.092 3.908 22 C -0.136 4.136 23 C -0.131 4.131 24 C -0.147 4.147 25 C -0.131 4.131 26 C -0.122 4.122 27 N -0.293 5.293 28 C -0.055 4.055 29 C -0.231 4.231 30 H 0.117 0.883 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.153 0.847 34 H 0.157 0.843 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.157 0.843 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -15.347 -13.221 2.060 20.361 hybrid contribution 0.414 0.759 -1.002 1.323 sum -14.933 -12.462 1.058 19.478 Atomic orbital electron populations 1.23078 0.78315 1.03914 1.01591 1.86050 1.21487 1.27023 1.88488 1.19176 0.92372 0.84114 0.95399 1.20291 0.91231 0.98365 1.07465 1.21024 1.00506 0.90174 0.94919 1.17289 0.92571 0.87448 1.07088 1.23285 0.86944 0.93380 1.00486 1.74773 1.16936 0.93965 1.26716 1.85416 1.32160 1.11833 1.70027 1.24034 0.81161 0.88565 0.91466 1.43548 1.08035 0.96960 1.73697 1.19734 0.79225 0.89157 0.98507 1.21343 1.12210 1.32379 0.92136 0.91983 1.24896 0.96033 0.95121 0.97444 1.69900 1.20592 1.33516 1.28723 0.86497 0.78429 0.78520 0.83745 1.20007 1.20957 1.19945 1.17297 0.83954 0.96233 0.93279 1.21224 0.95458 0.99170 0.97772 1.20905 0.94368 0.99917 0.97900 1.21065 0.99886 1.00095 0.93666 1.20934 0.95110 0.98250 0.98763 1.21274 0.94915 0.99477 0.96528 1.72373 1.26656 0.97125 1.33122 1.21026 0.93107 0.97730 0.93628 1.21155 1.00164 0.91836 1.09983 0.88267 0.92479 0.92484 0.84665 0.84338 0.93045 0.93688 0.92240 0.85767 0.85973 0.86329 0.86131 0.86197 0.84310 0.84980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.27 10.49 -19.23 -0.20 -3.47 16 3 C 0.14 1.56 6.69 -39.12 -0.26 1.30 16 4 C -0.15 -1.84 9.97 -39.48 -0.39 -2.23 16 5 C -0.05 -0.63 9.68 -39.28 -0.38 -1.01 16 6 C -0.04 -0.65 5.88 -104.88 -0.62 -1.27 16 7 C 0.23 4.38 7.79 -156.21 -1.22 3.16 16 8 N -0.40 -8.30 11.83 31.19 0.37 -7.94 16 9 O 0.05 1.18 10.85 17.00 0.18 1.36 16 10 C 0.45 9.75 8.32 -87.30 -0.73 9.02 16 11 N -0.50 -10.71 2.57 -117.07 -0.30 -11.01 16 12 C 0.25 6.06 5.26 -5.19 -0.03 6.04 16 13 C -0.54 -14.38 9.39 -34.44 -0.32 -14.70 16 14 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 15 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 16 N -0.89 -24.73 13.29 55.43 0.74 -23.99 16 17 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 18 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 C 0.18 3.47 4.98 -83.72 -0.42 3.05 16 22 C -0.12 -1.92 9.69 -39.39 -0.38 -2.30 16 23 C -0.11 -1.53 10.04 -39.61 -0.40 -1.93 16 24 C -0.13 -1.66 10.04 -39.54 -0.40 -2.06 16 25 C -0.11 -1.59 10.04 -39.61 -0.40 -1.99 16 26 C -0.10 -1.78 9.79 -39.38 -0.39 -2.17 16 27 N -0.55 -10.88 10.88 -13.06 -0.14 -11.02 16 28 C -0.03 -0.47 9.69 -39.28 -0.38 -0.85 16 29 C -0.21 -2.37 9.02 -39.48 -0.36 -2.73 16 30 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.31 7.64 -51.93 -0.40 -0.08 16 32 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 33 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.14 1.84 7.86 -52.49 -0.41 1.43 16 35 H 0.05 1.27 7.86 -51.93 -0.41 0.86 16 36 H 0.05 1.15 7.80 -51.93 -0.41 0.75 16 37 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.12 1.96 8.06 -52.48 -0.42 1.54 16 39 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 40 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 41 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 42 H 0.12 2.18 8.06 -52.49 -0.42 1.75 16 43 H 0.14 1.86 7.87 -52.49 -0.41 1.45 16 44 H 0.13 1.11 6.28 -52.49 -0.33 0.78 16 LS Contribution 387.91 15.07 5.85 5.85 Total: -1.00 -30.16 387.91 -9.96 -40.12 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -5.27 Total: 1.94 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -6.17 Total: -7.76 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 0.66 Total: -53.96 kcal Atomic # 8 Polarization: -2.09 SS G_CDS: -0.02 Total: -2.11 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.16 -9.96 -40.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009831713.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.081 kcal (2) G-P(sol) polarization free energy of solvation -30.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds